Uses of Interface
psidev.psi.mi.jami.model.Complex

Packages that use Complex

Package	Description
psidev.psi.mi.jami.binary.expansion
psidev.psi.mi.jami.enricher.impl.full
psidev.psi.mi.jami.enricher.impl.minimal
psidev.psi.mi.jami.enricher.listener.impl
psidev.psi.mi.jami.enricher.listener.impl.log
psidev.psi.mi.jami.enricher.listener.impl.writer
psidev.psi.mi.jami.factory
psidev.psi.mi.jami.json.binary
psidev.psi.mi.jami.json.nary
psidev.psi.mi.jami.listener.comparator.event
psidev.psi.mi.jami.listener.comparator.observer
psidev.psi.mi.jami.listener.impl
psidev.psi.mi.jami.model.impl
psidev.psi.mi.jami.tab.extension
psidev.psi.mi.jami.utils.clone
psidev.psi.mi.jami.utils.comparator.interactor
psidev.psi.mi.jami.xml
psidev.psi.mi.jami.xml.cache
psidev.psi.mi.jami.xml.io.iterator
psidev.psi.mi.jami.xml.io.writer.compact
psidev.psi.mi.jami.xml.io.writer.compact.extended
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30
psidev.psi.mi.jami.xml.model.extension.binary.xml30
psidev.psi.mi.jami.xml.model.extension.datasource
psidev.psi.mi.jami.xml.model.extension.factory
psidev.psi.mi.jami.xml.model.extension.xml253
psidev.psi.mi.jami.xml.model.extension.xml254
psidev.psi.mi.jami.xml.model.extension.xml300
psidev.psi.mi.jami.xml.model.reference.xml253
psidev.psi.mi.jami.xml.model.reference.xml254
psidev.psi.mi.jami.xml.model.reference.xml300
psidev.psi.mi.jami.xml.model.xml253
psidev.psi.mi.jami.xml.model.xml254
psidev.psi.mi.jami.xml.model.xml30

Uses of Complex in psidev.psi.mi.jami.binary.expansion

Methods in psidev.psi.mi.jami.binary.expansion that return Complex

Modifier and Type	Method	Description
protected Complex	AbstractBipartiteExpansion.createComplexEntity(T interaction)	createComplexEntity

Methods in psidev.psi.mi.jami.binary.expansion with parameters of type Complex

Modifier and Type	Method	Description
protected abstract <P extends Participant> P	AbstractBipartiteExpansion.createParticipantForComplexEntity(Complex complexEntity)	createParticipantForComplexEntity
protected Participant	BipartiteExpansion.createParticipantForComplexEntity(Complex complexEntity)	createParticipantForComplexEntity
protected ParticipantEvidence	InteractionEvidenceBipartiteExpansion.createParticipantForComplexEntity(Complex complexEntity)	createParticipantForComplexEntity
protected ModelledParticipant	ModelledInteractionBipartiteExpansion.createParticipantForComplexEntity(Complex complexEntity)	createParticipantForComplexEntity

Uses of Complex in psidev.psi.mi.jami.enricher.impl.full

Methods in psidev.psi.mi.jami.enricher.impl.full that return types with arguments of type Complex

Modifier and Type	Method	Description
protected FullInteractorBaseEnricher<Complex>	FullComplexEnricher.getInteractorEnricher()	Getter for the field interactorEnricher.
protected FullInteractorBaseUpdater<Complex>	FullComplexUpdater.getInteractorEnricher()	Getter for the field interactorEnricher.
InteractorFetcher<Complex>	FullComplexEnricher.getInteractorFetcher()	getInteractorFetcher.
InteractorFetcher<Complex>	FullComplexUpdater.getInteractorFetcher()	getInteractorFetcher.
InteractorEnricherListener<Complex>	FullComplexEnricher.getListener()	getListener.
InteractorEnricherListener<Complex>	FullComplexUpdater.getListener()	getListener.

Methods in psidev.psi.mi.jami.enricher.impl.full with parameters of type Complex

Modifier and Type	Method	Description
protected void	FullComplexEnricher.processOtherProperties(Complex interactionToEnrich)	Strategy for the Interaction enrichment.
protected void	FullComplexEnricher.processOtherProperties(Complex objectToEnrich, Complex objectSource)	processOtherProperties.
protected void	FullComplexUpdater.processOtherProperties(Complex interactionToEnrich)	Strategy for the Interaction enrichment.
protected void	FullComplexUpdater.processOtherProperties(Complex objectToEnrich, Complex objectSource)	processOtherProperties.

Method parameters in psidev.psi.mi.jami.enricher.impl.full with type arguments of type Complex

Modifier and Type	Method	Description
void	FullComplexEnricher.setListener(InteractorEnricherListener<Complex> listener)	setListener.
void	FullComplexUpdater.setListener(InteractorEnricherListener<Complex> listener)	setListener.

Constructor parameters in psidev.psi.mi.jami.enricher.impl.full with type arguments of type Complex

Constructor	Description
FullComplexEnricher(FullInteractorBaseEnricher<Complex> interactorEnricher)	Constructor for FullComplexEnricher.
FullComplexUpdater(FullInteractorBaseUpdater<Complex> interactorEnricher)	Constructor for FullComplexUpdater.

Uses of Complex in psidev.psi.mi.jami.enricher.impl.minimal

Methods in psidev.psi.mi.jami.enricher.impl.minimal that return types with arguments of type Complex

Modifier and Type	Method	Description
protected MinimalInteractorBaseUpdater<Complex>	MinimalComplexUpdater.getInteractorEnricher()	Getter for the field interactorEnricher.
InteractorFetcher<Complex>	MinimalComplexEnricher.getInteractorFetcher()	getInteractorFetcher.
InteractorFetcher<Complex>	MinimalComplexUpdater.getInteractorFetcher()	getInteractorFetcher.
InteractorEnricherListener<Complex>	MinimalComplexEnricher.getListener()	getListener.
InteractorEnricherListener<Complex>	MinimalComplexUpdater.getListener()	getListener.

Methods in psidev.psi.mi.jami.enricher.impl.minimal with parameters of type Complex

Modifier and Type	Method	Description
protected void	MinimalComplexEnricher.processOtherProperties(Complex interactionToEnrich)	Strategy for the Interaction enrichment.
protected void	MinimalComplexEnricher.processOtherProperties(Complex objectToEnrich, Complex objectSource)	processOtherProperties.
protected void	MinimalComplexUpdater.processOtherProperties(Complex interactionToEnrich)	Strategy for the Interaction enrichment.
protected void	MinimalComplexUpdater.processOtherProperties(Complex objectToEnrich, Complex objectSource)	processOtherProperties.

Method parameters in psidev.psi.mi.jami.enricher.impl.minimal with type arguments of type Complex

Modifier and Type	Method	Description
void	MinimalComplexEnricher.setListener(InteractorEnricherListener<Complex> listener)	setListener.
void	MinimalComplexUpdater.setListener(InteractorEnricherListener<Complex> listener)	setListener.

Constructor parameters in psidev.psi.mi.jami.enricher.impl.minimal with type arguments of type Complex

Constructor	Description
MinimalComplexEnricher(MinimalInteractorBaseEnricher<Complex> interactorEnricher)	Constructor for MinimalComplexEnricher.
MinimalComplexUpdater(MinimalInteractorBaseUpdater<Complex> interactorEnricher)	Constructor for MinimalComplexUpdater.

Uses of Complex in psidev.psi.mi.jami.enricher.listener.impl

Methods in psidev.psi.mi.jami.enricher.listener.impl with parameters of type Complex

Modifier and Type	Method	Description
void	ComplexEnricherListenerManager.onAddedAlias(Complex o, Alias added)	Listen to the event where an alias has been added to the object aliases.
void	ComplexEnricherListenerManager.onFullNameUpdate(Complex interactor, String oldFullName)	Listens for the event where the fullName has been changed.
void	ComplexEnricherListenerManager.onInteractorTypeUpdate(Complex interactor, CvTerm oldType)	Listen to the event where the interactor type has been initialised.
void	ComplexEnricherListenerManager.onOrganismUpdate(Complex interactor, Organism oldOrganism)	Listen to the event where the organism of a interactor has been initialised.
void	ComplexEnricherListenerManager.onRemovedAlias(Complex o, Alias removed)	Listen to the event where an alias has been removed from the object aliases.

Uses of Complex in psidev.psi.mi.jami.enricher.listener.impl.log

Methods in psidev.psi.mi.jami.enricher.listener.impl.log with parameters of type Complex

Modifier and Type	Method	Description
void	ComplexEnricherLogger.onEnrichmentComplete(Complex interaction, EnrichmentStatus status, String message)	onEnrichmentComplete.
void	ComplexEnricherLogger.onEnrichmentError(Complex object, String message, Exception e)	onEnrichmentError.

Uses of Complex in psidev.psi.mi.jami.enricher.listener.impl.writer

Methods in psidev.psi.mi.jami.enricher.listener.impl.writer with parameters of type Complex

Modifier and Type	Method	Description
void	ComplexEnricherStatisticsWriter.onAddedAlias(Complex o, Alias added)	Listen to the event where an alias has been added to the object aliases.
void	ComplexEnricherStatisticsWriter.onFullNameUpdate(Complex interactor, String oldFullName)	Listens for the event where the fullName has been changed.
void	ComplexEnricherStatisticsWriter.onInteractorTypeUpdate(Complex interactor, CvTerm oldType)	Listen to the event where the interactor type has been initialised.
void	ComplexEnricherStatisticsWriter.onOrganismUpdate(Complex interactor, Organism oldOrganism)	Listen to the event where the organism of a interactor has been initialised.
void	ComplexEnricherStatisticsWriter.onRemovedAlias(Complex o, Alias removed)	Listen to the event where an alias has been removed from the object aliases.

Uses of Complex in psidev.psi.mi.jami.factory

Methods in psidev.psi.mi.jami.factory that return Complex

Modifier and Type	Method	Description
Complex	DefaultInteractorFactory.createComplex(String name, CvTerm type)	Creates a new Complex with the name and interactor type
Complex	InteractorFactory.createComplex(String name, CvTerm type)	Creates a new Complex with the name and interactor type

Uses of Complex in psidev.psi.mi.jami.json.binary

Methods in psidev.psi.mi.jami.json.binary with parameters of type Complex

Modifier and Type	Method	Description
protected void	AbstractMIJsonBinaryWriter.writeComplex(Complex complex)	writeComplex.

Uses of Complex in psidev.psi.mi.jami.json.nary

Methods in psidev.psi.mi.jami.json.nary with parameters of type Complex

Modifier and Type	Method	Description
protected abstract void	AbstractMIJsonWriter.writeComplex(Complex complex)	writeComplex.
protected void	LightMIJsonWriter.writeComplex(Complex complex)	writeComplex.
protected void	MIJsonEvidenceWriter.writeComplex(Complex complex)	writeComplex.
protected void	MIJsonModelledWriter.writeComplex(Complex complex)	writeComplex.
protected void	MIJsonWriter.writeComplex(Complex complex)	writeComplex.

Uses of Complex in psidev.psi.mi.jami.listener.comparator.event

Methods in psidev.psi.mi.jami.listener.comparator.event that return Complex

Modifier and Type	Method	Description
Complex	ComplexComparisonEvent.getComplex1()
Complex	ComplexComparisonEvent.getComplex2()

Constructors in psidev.psi.mi.jami.listener.comparator.event with parameters of type Complex

Constructor	Description
ComplexComparisonEvent(Complex complex1, Complex complex2, ComplexComparisonEvent.EventType eventType)

Uses of Complex in psidev.psi.mi.jami.listener.comparator.observer

Methods in psidev.psi.mi.jami.listener.comparator.observer that return Complex

Modifier and Type	Method	Description
Complex	ComplexComparatorObserver.getComplex1()
Complex	ComplexComparatorObserver.getComplex2()

Methods in psidev.psi.mi.jami.listener.comparator.observer with parameters of type Complex

Modifier and Type	Method	Description
void	ComplexComparatorObserver.setComplex1(Complex complex1)
void	ComplexComparatorObserver.setComplex2(Complex complex2)

Constructors in psidev.psi.mi.jami.listener.comparator.observer with parameters of type Complex

Constructor	Description
ComplexComparatorObserver(Complex complex1, Complex complex2)

Uses of Complex in psidev.psi.mi.jami.listener.impl

Methods in psidev.psi.mi.jami.listener.impl with parameters of type Complex

Modifier and Type	Method	Description
void	ComplexChangeLogger.onAddedConfidence(Complex o, Confidence added)	Listen to the event where a confidence has been added to the object confidences.
void	ComplexChangeLogger.onAddedCooperativeEffect(Complex interaction, CooperativeEffect added)	onAddedCooperativeEffect
void	ComplexChangeLogger.onAddedInteractionEvidence(Complex interaction, InteractionEvidence added)	onAddedInteractionEvidence
void	ComplexChangeLogger.onAddedParameter(Complex o, Parameter added)	Listen to the event where a parameter has been added to the object parameters.
void	ComplexChangeLogger.onAddedParticipant(Complex interaction, Participant addedParticipant)	onAddedParticipant
void	ComplexChangeLogger.onCreatedDateUpdate(Complex interaction, Date oldCreated)	onCreatedDateUpdate
void	ComplexChangeLogger.onEvidenceTypeUpdate(Complex interaction, CvTerm oldType)	onEvidenceTypeUpdate
void	ComplexChangeLogger.onInteractionTypeUpdate(Complex interaction, CvTerm oldType)	onInteractionTypeUpdate
void	ComplexChangeLogger.onRemovedConfidence(Complex o, Confidence removed)	Listen to the event where a confidence has been removed from the object confidences.
void	ComplexChangeLogger.onRemovedCooperativeEffect(Complex interaction, CooperativeEffect removed)	onRemovedCooperativeEffect
void	ComplexChangeLogger.onRemovedInteractionEvidence(Complex interaction, InteractionEvidence removed)	onRemovedInteractionEvidence
void	ComplexChangeLogger.onRemovedParameter(Complex o, Parameter removed)	Listen to the event where a parameter has been removed from the object parameters.
void	ComplexChangeLogger.onRemovedParticipant(Complex interaction, Participant removedParticipant)	onRemovedParticipant
void	ComplexChangeLogger.onSourceUpdate(Complex interaction, Source oldSource)	onSourceUpdate
void	ComplexChangeLogger.onUpdatedDateUpdate(Complex interaction, Date oldUpdate)	onUpdatedDateUpdate

Uses of Complex in psidev.psi.mi.jami.model.impl

Classes in psidev.psi.mi.jami.model.impl that implement Complex

Modifier and Type	Class	Description
class	DefaultComplex	Default implementation for complexes Notes: The equals and hashcode methods have NOT been overridden because the Complex object is a complex object.

Uses of Complex in psidev.psi.mi.jami.tab.extension

Classes in psidev.psi.mi.jami.tab.extension that implement Complex

Modifier and Type	Class	Description
class	MitabComplex	Mitab extension for Complex.

Uses of Complex in psidev.psi.mi.jami.utils.clone

Methods in psidev.psi.mi.jami.utils.clone with parameters of type Complex

Modifier and Type	Method	Description
static void	InteractorCloner.copyAndOverrideBasicComplexPropertiesWithInteractionProperties(Interaction source, Complex target)	This method will copy basic properties from the Interaction source in the complex target.
static void	InteractorCloner.copyAndOverrideBasicComplexPropertiesWithModelledInteractionProperties(ModelledInteraction source, Complex target)	This method will copy basic properties from the Interaction source in the complex target.
static void	InteractorCloner.copyAndOverrideComplexProperties(Complex source, Complex target, boolean createNewParticipant, boolean ignoreParticipants)	This method will copy properties of complex source in complex target and will override all the other properties of Target complex.

Uses of Complex in psidev.psi.mi.jami.utils.comparator.interactor

Methods in psidev.psi.mi.jami.utils.comparator.interactor that return types with arguments of type Complex

Modifier and Type	Method	Description
Comparator<Complex>	InteractorComparator.getComplexComparator()	Getter for the field complexComparator.

Methods in psidev.psi.mi.jami.utils.comparator.interactor with parameters of type Complex

Modifier and Type	Method	Description
static boolean	DefaultComplexComparator.areEquals(Complex complex1, Complex complex2)	Use DefaultComplexComparator to know if two complexes are equals.
static boolean	DefaultExactComplexComparator.areEquals(Complex complex1, Complex complex2)	Use DefaultExactComplexComparator to know if two complexes are equals.
static boolean	UnambiguousComplexComparator.areEquals(Complex complex1, Complex complex2)	Use UnambiguousComplexComparator to know if two complexes are equals.
static boolean	UnambiguousExactComplexComparator.areEquals(Complex complex1, Complex complex2)	Use UnambiguousExactComplexComparator to know if two complexes are equals.
int	ComplexComparator.compare(Complex complex1, Complex complex2)	It will first look at the default properties of an interactor using AbstractInteractorBaseComparator.
int	UnambiguousComplexComparator.compare(Complex complex1, Complex complex2)	It will first look at the default properties of an interactor using AbstractInteractorBaseComparator.
int	UnambiguousExactComplexComparator.compare(Complex complex1, Complex complex2)

Uses of Complex in psidev.psi.mi.jami.xml

Methods in psidev.psi.mi.jami.xml with parameters of type Complex

Modifier and Type	Method	Description
void	XmlEntryContext.registerComplex(int id, Complex o)	registerComplex.

Uses of Complex in psidev.psi.mi.jami.xml.cache

Methods in psidev.psi.mi.jami.xml.cache that return Complex

Modifier and Type	Method	Description
Complex	InMemoryPsiXmlCache.getComplex(int id)	getComplex.
Complex	PsiXmlFileIndexCache.getComplex(int id)	getComplex.
Complex	PsiXmlIdCache.getComplex(int id)	getComplex.
Complex	InMemoryPsiXmlCache.registerComplexLoadedFrom(Interaction f)	registerComplexLoadedFrom.
Complex	PsiXmlFileIndexCache.registerComplexLoadedFrom(Interaction f)	registerComplexLoadedFrom.
Complex	PsiXmlIdCache.registerComplexLoadedFrom(Interaction f)	registerComplexLoadedFrom.

Methods in psidev.psi.mi.jami.xml.cache with parameters of type Complex

Modifier and Type	Method	Description
int	InMemoryIdentityObjectCache.extractIdForComplex(Complex o)	This method will extract the id for this object if it is already registered, assign an id and register the object if not already registered
int	InMemoryLightIdentityObjectCache.extractIdForComplex(Complex o)	This method will extract the id for this object if it is already registered, assign an id and register the object if not already registered
int	PsiXmlObjectCache.extractIdForComplex(Complex o)	This method will extract the id for this object if it is already registered, assign an id and register the object if not already registered
void	InMemoryPsiXmlCache.registerComplex(int id, Complex object)	Register a complex with an id
void	PsiXmlFileIndexCache.registerComplex(int id, Complex object)	Register a complex with an id
void	PsiXmlIdCache.registerComplex(int id, Complex object)	Register a complex with an id

Uses of Complex in psidev.psi.mi.jami.xml.io.iterator

Constructor parameters in psidev.psi.mi.jami.xml.io.iterator with type arguments of type Complex

Constructor	Description
XmlComplexIterator(PsiXmlParser<Complex> lineParser)	Constructor for XmlComplexIterator.

Uses of Complex in psidev.psi.mi.jami.xml.io.writer.compact

Methods in psidev.psi.mi.jami.xml.io.writer.compact with parameters of type Complex

Modifier and Type	Method	Description
protected void	CompactXmlComplexWriter.registerAvailabilities(Complex interaction)	registerAvailabilities.
protected void	CompactXmlComplexWriter.registerExperiment(Complex interaction)	registerExperiment.

Uses of Complex in psidev.psi.mi.jami.xml.io.writer.compact.extended

Methods in psidev.psi.mi.jami.xml.io.writer.compact.extended with parameters of type Complex

Modifier and Type	Method	Description
protected void	CompactXmlComplexWriter.registerAvailabilities(Complex interaction)	registerAvailabilities.
protected void	CompactXmlComplexWriter.registerExperiment(Complex interaction)	registerExperiment.

Uses of Complex in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30 with parameters of type Complex

Modifier and Type	Method	Description
protected void	AbstractXmlModelledInteractionWriter.writeInteractorType(Complex complex)	writeInteractorType.
protected void	AbstractXmlModelledInteractionWriter.writeOrganism(Complex complex)	writeOrganism.

Uses of Complex in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25 with parameters of type Complex

Modifier and Type	Method	Description
Experiment	XmlComplexWriter.extractDefaultExperimentFrom(Complex interaction)	extractDefaultExperimentFrom.
protected CvTerm	XmlComplexWriter.writeExperiments(Complex object)	writeExperiments.

Uses of Complex in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25 with parameters of type Complex

Modifier and Type	Method	Description
Experiment	XmlComplexWriter.extractDefaultExperimentFrom(Complex interaction)	extractDefaultExperimentFrom.
protected CvTerm	XmlComplexWriter.writeExperiments(Complex object)	writeExperiments.

Uses of Complex in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml25

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml25 with parameters of type Complex

Modifier and Type	Method	Description
Experiment	XmlComplexWriter.extractDefaultExperimentFrom(Complex interaction)	extractDefaultExperimentFrom.
List<Experiment>	XmlComplexWriter.extractDefaultExperimentsFrom(Complex interaction)	extractDefaultExperimentsFrom.
protected CvTerm	XmlComplexWriter.writeExperiments(Complex object)	writeExperiments.

Uses of Complex in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml25

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml25 with parameters of type Complex

Modifier and Type	Method	Description
Experiment	XmlComplexWriter.extractDefaultExperimentFrom(Complex interaction)	extractDefaultExperimentFrom.
List<Experiment>	XmlComplexWriter.extractDefaultExperimentsFrom(Complex interaction)	extractDefaultExperimentsFrom.
protected CvTerm	XmlComplexWriter.writeExperiments(Complex object)	writeExperiments.

Uses of Complex in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30 with parameters of type Complex

Modifier and Type	Method	Description
protected void	AbstractXmlModelledInteractionWriter.writeInteractorType(Complex complex)	writeInteractorType.
protected void	AbstractXmlModelledInteractionWriter.writeOrganism(Complex complex)	writeOrganism.

Uses of Complex in psidev.psi.mi.jami.xml.model.extension.binary.xml30

Classes in psidev.psi.mi.jami.xml.model.extension.binary.xml30 that implement Complex

Modifier and Type	Class	Description
class	XmlModelledBinaryInteraction	Xml implementation of ModelledInteraction
class	XmlModelledBinaryInteractionWrapper	Wrapper for Xml binary interactions

Uses of Complex in psidev.psi.mi.jami.xml.model.extension.datasource

Methods in psidev.psi.mi.jami.xml.model.extension.datasource that return types with arguments of type Complex

Modifier and Type	Method	Description
protected Iterator<Complex>	XmlComplexStreamSource.createXmlIterator()	createXmlIterator.
Iterator<Complex>	XmlComplexStreamSource.getInteractorsIterator()	The interactors iterator for this datasource.

Uses of Complex in psidev.psi.mi.jami.xml.model.extension.factory

Methods in psidev.psi.mi.jami.xml.model.extension.factory that return Complex

Modifier and Type	Method	Description
Complex	XmlInteractorFactory.createComplex(String name, CvTerm type)	Creates a new Complex with the name and interactor type

Uses of Complex in psidev.psi.mi.jami.xml.model.extension.xml253

Classes in psidev.psi.mi.jami.xml.model.extension.xml253 that implement Complex

Modifier and Type	Class	Description
class	AbstractXmlComplex	Xml implementation for complex
class	DefaultXmlComplex	Xml implementation for complex
class	XmlBasicInteractionComplexWrapper	Wrapper of basic interactions If we add new modelled participants/remove participants, they will be added/removed from the list of participants of the wrapped interaction.
class	XmlComplex	Xml implementation of ModelledInteraction
class	XmlInteractionEvidenceComplexWrapper	Xml wrapper for interaction evidences used as complex
class	XmlModelledInteractionComplexWrapper	Wrapper for complexes that were loaded as abstract interactions

Uses of Complex in psidev.psi.mi.jami.xml.model.extension.xml254

Classes in psidev.psi.mi.jami.xml.model.extension.xml254 that implement Complex

Modifier and Type	Class	Description
class	AbstractXmlComplex	Xml implementation for complex
class	DefaultXmlComplex	Xml implementation for complex
class	XmlBasicInteractionComplexWrapper	Wrapper of basic interactions If we add new modelled participants/remove participants, they will be added/removed from the list of participants of the wrapped interaction.
class	XmlComplex	Xml implementation of ModelledInteraction
class	XmlInteractionEvidenceComplexWrapper	Xml wrapper for interaction evidences used as complex
class	XmlModelledInteractionComplexWrapper	Wrapper for complexes that were loaded as abstract interactions

Uses of Complex in psidev.psi.mi.jami.xml.model.extension.xml300

Subinterfaces of Complex in psidev.psi.mi.jami.xml.model.extension.xml300

Modifier and Type	Interface	Description
interface	ExtendedPsiXmlModelledInteraction	Extended interaction for PSI-XML 2,5 standards

Classes in psidev.psi.mi.jami.xml.model.extension.xml300 that implement Complex

Modifier and Type	Class	Description
class	AbstractXmlComplex	Xml implementation for complex
class	DefaultXmlComplex	Xml implementation for complex
class	XmlBasicInteractionComplexWrapper	Wrapper of basic interactions If we add new modelled participants/remove participants, they will be added/removed from the list of participants of the wrapped interaction.
class	XmlComplex	Xml implementation of ModelledInteraction
class	XmlInteractionEvidenceComplexWrapper	Xml wrapper for interaction evidences used as complex
class	XmlModelledInteraction	Xml 3.0.0 implementation of ModelledInteraction
class	XmlModelledInteractionComplexWrapper	Wrapper for complexes that were loaded as abstract interactions

Uses of Complex in psidev.psi.mi.jami.xml.model.reference.xml253

Classes in psidev.psi.mi.jami.xml.model.reference.xml253 that implement Complex

Modifier and Type	Class	Description
class	AbstractComplexRef	Abstract class for references to a complex

Uses of Complex in psidev.psi.mi.jami.xml.model.reference.xml254

Classes in psidev.psi.mi.jami.xml.model.reference.xml254 that implement Complex

Modifier and Type	Class	Description
class	AbstractComplexRef	Abstract class for references to a complex

Uses of Complex in psidev.psi.mi.jami.xml.model.reference.xml300

Classes in psidev.psi.mi.jami.xml.model.reference.xml300 that implement Complex

Modifier and Type	Class	Description
class	AbstractComplexRef	Abstract class for references to a complex

Uses of Complex in psidev.psi.mi.jami.xml.model.xml253

Methods in psidev.psi.mi.jami.xml.model.xml253 that return types with arguments of type Complex

Modifier and Type	Method	Description
List<Complex>	ComplexEntry.JAXBInteractionsWrapper.getJAXBInteractions()

Uses of Complex in psidev.psi.mi.jami.xml.model.xml254

Methods in psidev.psi.mi.jami.xml.model.xml254 that return types with arguments of type Complex

Modifier and Type	Method	Description
List<Complex>	ComplexEntry.JAXBInteractionsWrapper.getJAXBInteractions()

Uses of Complex in psidev.psi.mi.jami.xml.model.xml30

Methods in psidev.psi.mi.jami.xml.model.xml30 that return types with arguments of type Complex

Modifier and Type	Method	Description
List<Complex>	ComplexEntry.JAXBInteractionsWrapper.getJAXBInteractions()