Uses of Interface
psidev.psi.mi.jami.binary.ModelledBinaryInteraction

Packages that use ModelledBinaryInteraction

Package	Description
psidev.psi.mi.jami.binary.expansion
psidev.psi.mi.jami.binary.impl
psidev.psi.mi.jami.factory
psidev.psi.mi.jami.json.binary
psidev.psi.mi.jami.json.binary.elements
psidev.psi.mi.jami.tab.extension
psidev.psi.mi.jami.tab.extension.datasource
psidev.psi.mi.jami.tab.io.iterator
psidev.psi.mi.jami.tab.io.parser
psidev.psi.mi.jami.tab.io.writer
psidev.psi.mi.jami.tab.io.writer.extended
psidev.psi.mi.jami.tab.io.writer.feeder
psidev.psi.mi.jami.utils
psidev.psi.mi.jami.utils.clone
psidev.psi.mi.jami.xml.io.iterator
psidev.psi.mi.jami.xml.io.parser
psidev.psi.mi.jami.xml.io.writer.compact
psidev.psi.mi.jami.xml.io.writer.compact.extended
psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml30
psidev.psi.mi.jami.xml.model.extension.binary
psidev.psi.mi.jami.xml.model.extension.binary.xml30
psidev.psi.mi.jami.xml.model.extension.datasource
psidev.psi.mi.jami.xml.model.extension.factory.xml25
psidev.psi.mi.jami.xml.model.extension.factory.xml30

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.binary.expansion

Methods in psidev.psi.mi.jami.binary.expansion that return ModelledBinaryInteraction

Modifier and Type	Method	Description
protected <P extends Participant> ModelledBinaryInteraction	ModelledInteractionBipartiteExpansion.createBinaryInteraction(ModelledInteraction interaction, P p1, P p2)	createBinaryInteraction
protected <P extends Participant> ModelledBinaryInteraction	ModelledInteractionMatrixExpansion.createBinaryInteraction(ModelledInteraction interaction, P p1, P p2)	createBinaryInteraction
protected <P extends Participant> ModelledBinaryInteraction	ModelledInteractionSpokeExpansion.createBinaryInteraction(ModelledInteraction interaction, P p1, P p2)	createBinaryInteraction

Methods in psidev.psi.mi.jami.binary.expansion that return types with arguments of type ModelledBinaryInteraction

Modifier and Type	Method	Description
protected Collection<ModelledBinaryInteraction>	ModelledInteractionBipartiteExpansion.createBinaryInteractionWrappersFrom(ModelledInteraction interaction)	createBinaryInteractionWrappersFrom
protected Collection<ModelledBinaryInteraction>	ModelledInteractionMatrixExpansion.createBinaryInteractionWrappersFrom(ModelledInteraction interaction)	createBinaryInteractionWrappersFrom
protected Collection<ModelledBinaryInteraction>	ModelledInteractionSpokeExpansion.createBinaryInteractionWrappersFrom(ModelledInteraction interaction)	createBinaryInteractionWrappersFrom
protected Collection<ModelledBinaryInteraction>	ModelledInteractionBipartiteExpansion.createNewSelfBinaryInteractionsFrom(ModelledInteraction interaction)	createNewSelfBinaryInteractionsFrom
protected Collection<ModelledBinaryInteraction>	ModelledInteractionMatrixExpansion.createNewSelfBinaryInteractionsFrom(ModelledInteraction interaction)	createNewSelfBinaryInteractionsFrom
protected Collection<ModelledBinaryInteraction>	ModelledInteractionSpokeExpansion.createNewSelfBinaryInteractionsFrom(ModelledInteraction interaction)	createNewSelfBinaryInteractionsFrom

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.binary.impl

Classes in psidev.psi.mi.jami.binary.impl that implement ModelledBinaryInteraction

Modifier and Type	Class	Description
class	DefaultModelledBinaryInteraction	Default implementation for ModelledBinaryInteraction
class	DefaultNamedModelledBinaryInteraction	Default implementation for Named modelled binary interaction
class	ModelledBinaryInteractionWrapper	A wrapper for ModelledInteraction which contains two participants

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.factory

Methods in psidev.psi.mi.jami.factory that return ModelledBinaryInteraction

Modifier and Type	Method	Description
ModelledBinaryInteraction	BinaryInteractionFactory.createModelledBinaryInteractionFrom(ModelledInteraction interaction, ModelledParticipant p1, ModelledParticipant p2, CvTerm expansionMethod)	Create a new ModelledBinaryInteraction object from a ModelledInteraction parent and two modelled participants
ModelledBinaryInteraction	DefaultBinaryInteractionFactory.createModelledBinaryInteractionFrom(ModelledInteraction interaction, ModelledParticipant p1, ModelledParticipant p2, CvTerm expansionMethod)	Create a new ModelledBinaryInteraction object from a ModelledInteraction parent and two modelled participants
ModelledBinaryInteraction	BinaryInteractionFactory.createModelledBinaryInteractionWrapperFrom(ModelledInteraction interaction)	Creates a ModelledBinaryInteraction that wraps the given interaction
ModelledBinaryInteraction	DefaultBinaryInteractionFactory.createModelledBinaryInteractionWrapperFrom(ModelledInteraction interaction)	Creates a ModelledBinaryInteraction that wraps the given interaction
ModelledBinaryInteraction	BinaryInteractionFactory.createSelfModelledBinaryInteractionFrom(ModelledInteraction interaction)	Creates a ModelledInteraction representing a self interaction
ModelledBinaryInteraction	DefaultBinaryInteractionFactory.createSelfModelledBinaryInteractionFrom(ModelledInteraction interaction)	Creates a ModelledInteraction representing a self interaction
ModelledBinaryInteraction	BinaryInteractionFactory.instantiateNewModelledBinaryInteraction()	Instantiate a new modelled binary interaction
ModelledBinaryInteraction	DefaultBinaryInteractionFactory.instantiateNewModelledBinaryInteraction()	instantiateNewModelledBinaryInteraction

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.json.binary

Constructor parameters in psidev.psi.mi.jami.json.binary with type arguments of type ModelledBinaryInteraction

Constructor	Description
MIJsonModelledWriter(File file, OntologyTermFetcher fetcher, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for MIJsonModelledWriter.
MIJsonModelledWriter(OutputStream output, OntologyTermFetcher fetcher, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for MIJsonModelledWriter.
MIJsonModelledWriter(Writer writer, OntologyTermFetcher fetcher, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for MIJsonModelledWriter.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.json.binary.elements

Methods in psidev.psi.mi.jami.json.binary.elements with parameters of type ModelledBinaryInteraction

Modifier and Type	Method	Description
protected String[]	SimpleJsonModelledBinaryInteractionWriter.generateInteractionIdentifier(ModelledBinaryInteraction object, Xref preferredIdentifier)	generateInteractionIdentifier.
void	SimpleJsonModelledBinaryInteractionWriter.write(ModelledBinaryInteraction object)	write.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.tab.extension

Classes in psidev.psi.mi.jami.tab.extension that implement ModelledBinaryInteraction

Modifier and Type	Class	Description
class	MitabModelledBinaryInteraction	A MitabBinaryInteraction is a modelled binaryInteraction with a MitabSourceLocator

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.tab.extension.datasource

Methods in psidev.psi.mi.jami.tab.extension.datasource that return types with arguments of type ModelledBinaryInteraction

Modifier and Type	Method	Description
protected Iterator<ModelledBinaryInteraction>	MitabModelledBinaryStreamSource.createMitabIterator()	createMitabIterator.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.tab.io.iterator

Constructor parameters in psidev.psi.mi.jami.tab.io.iterator with type arguments of type ModelledBinaryInteraction

Constructor	Description
MitabModelledBinaryIterator(MitabLineParser<ModelledBinaryInteraction,ModelledParticipant,ModelledFeature> lineParser)	Constructor for MitabModelledBinaryIterator.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.tab.io.parser

Methods in psidev.psi.mi.jami.tab.io.parser with parameters of type ModelledBinaryInteraction

Modifier and Type	Method	Description
protected void	ModelledBinaryLineParser.initialiseExpansionMethod(Collection<MitabCvTerm> expansion, ModelledBinaryInteraction interaction)	initialiseExpansionMethod.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.tab.io.writer

Method parameters in psidev.psi.mi.jami.tab.io.writer with type arguments of type ModelledBinaryInteraction

Modifier and Type	Method	Description
protected void	Mitab25ModelledWriter.initialiseExpansionMethod(ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected void	Mitab25BinaryWriter.setModelledBinaryWriter(AbstractMitab25BinaryWriter<ModelledBinaryInteraction,ModelledParticipant> modelledBinaryWriter)	Setter for the field modelledBinaryWriter.
protected void	Mitab26BinaryWriter.setModelledBinaryWriter(AbstractMitab26BinaryWriter<ModelledBinaryInteraction,ModelledParticipant> modelledBinaryWriter)	Setter for the field modelledBinaryWriter.
protected void	Mitab27BinaryWriter.setModelledBinaryWriter(AbstractMitab27BinaryWriter<ModelledBinaryInteraction,ModelledParticipant> modelledBinaryWriter)	Setter for the field modelledBinaryWriter.
protected void	Mitab28BinaryWriter.setModelledBinaryWriter(AbstractMitab28BinaryWriter<ModelledBinaryInteraction,ModelledParticipant> modelledBinaryWriter)	Setter for the field modelledBinaryWriter.

Constructor parameters in psidev.psi.mi.jami.tab.io.writer with type arguments of type ModelledBinaryInteraction

Constructor	Description
Mitab25ModelledWriter(File file, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab25ModelledWriter.
Mitab25ModelledWriter(OutputStream output, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab25ModelledWriter.
Mitab25ModelledWriter(Writer writer, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab25ModelledWriter.
Mitab26ModelledWriter(File file, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab26ModelledWriter.
Mitab26ModelledWriter(OutputStream output, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab26ModelledWriter.
Mitab26ModelledWriter(Writer writer, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab26ModelledWriter.
Mitab27ModelledWriter(File file, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab27ModelledWriter.
Mitab27ModelledWriter(OutputStream output, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab27ModelledWriter.
Mitab27ModelledWriter(Writer writer, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab27ModelledWriter.
Mitab28ModelledWriter(File file, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab28ModelledWriter.
Mitab28ModelledWriter(OutputStream output, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab28ModelledWriter.
Mitab28ModelledWriter(Writer writer, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab28ModelledWriter.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.tab.io.writer.extended

Method parameters in psidev.psi.mi.jami.tab.io.writer.extended with type arguments of type ModelledBinaryInteraction

Modifier and Type	Method	Description
protected void	Mitab25ModelledWriter.initialiseExpansionMethod(ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	initialiseExpansionMethod.

Constructor parameters in psidev.psi.mi.jami.tab.io.writer.extended with type arguments of type ModelledBinaryInteraction

Constructor	Description
Mitab25ModelledWriter(File file, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab25ModelledWriter.
Mitab25ModelledWriter(OutputStream output, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab25ModelledWriter.
Mitab25ModelledWriter(Writer writer, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab25ModelledWriter.
Mitab26ModelledWriter(File file, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab26ModelledWriter.
Mitab26ModelledWriter(OutputStream output, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab26ModelledWriter.
Mitab26ModelledWriter(Writer writer, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab26ModelledWriter.
Mitab27ModelledWriter(File file, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab27ModelledWriter.
Mitab27ModelledWriter(OutputStream output, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab27ModelledWriter.
Mitab27ModelledWriter(Writer writer, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab27ModelledWriter.
Mitab28ModelledWriter(File file, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab28ModelledWriter.
Mitab28ModelledWriter(OutputStream output, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab28ModelledWriter.
Mitab28ModelledWriter(Writer writer, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab28ModelledWriter.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.tab.io.writer.feeder

Methods in psidev.psi.mi.jami.tab.io.writer.feeder with parameters of type ModelledBinaryInteraction

Modifier and Type	Method	Description
void	MitabModelledInteractionFeeder.writeFirstAuthor(ModelledBinaryInteraction interaction)	writeFirstAuthor.
void	MitabModelledInteractionFeeder.writeHostOrganism(ModelledBinaryInteraction interaction)	writeHostOrganism.
void	MitabModelledInteractionFeeder.writeInteractionAnnotations(ModelledBinaryInteraction interaction)	writeInteractionAnnotations.
void	MitabModelledInteractionFeeder.writeInteractionConfidences(ModelledBinaryInteraction interaction)	writeInteractionConfidences.
void	MitabModelledInteractionFeeder.writeInteractionDetectionMethod(ModelledBinaryInteraction interaction)	writeInteractionDetectionMethod.
void	MitabModelledInteractionFeeder.writeInteractionIdentifiers(ModelledBinaryInteraction interaction)	writeInteractionIdentifiers.
void	MitabModelledInteractionFeeder.writeInteractionParameters(ModelledBinaryInteraction interaction)	writeInteractionParameters.
void	MitabModelledInteractionFeeder.writeInteractionXrefs(ModelledBinaryInteraction interaction)	writeInteractionXrefs.
void	MitabModelledInteractionFeeder.writeNegativeProperty(ModelledBinaryInteraction interaction)	writeNegativeProperty.
void	MitabModelledInteractionFeeder.writePublicationIdentifiers(ModelledBinaryInteraction interaction)	writePublicationIdentifiers.
void	MitabModelledInteractionFeeder.writeSource(ModelledBinaryInteraction interaction)	writeSource.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.utils

Methods in psidev.psi.mi.jami.utils that return ModelledBinaryInteraction

Modifier and Type	Method	Description
static ModelledBinaryInteraction	InteractionUtils.createAndAddNewSelfModelledBinaryInteraction(ModelledInteraction interaction)	Creates a new ModelledBinaryInteraction from the given interaction which should only contain one participant with a stoichiometry >= 2 or participant stoichiometry null and participant is not self/putative self.
static ModelledBinaryInteraction	InteractionUtils.createModelledBinaryInteractionFrom(ModelledInteraction interaction)	Create a ModelledBinaryInteractionWrapper from the given modelled interaction which should contain not more than two participants

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.utils.clone

Methods in psidev.psi.mi.jami.utils.clone with parameters of type ModelledBinaryInteraction

Modifier and Type	Method	Description
static void	InteractionCloner.copyAndOverrideModelledParticipantsToBinary(ModelledInteraction source, ModelledBinaryInteraction target, boolean createNewParticipant, boolean self)	This method will copy participants of modelled interaction source in binary target.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.xml.io.iterator

Constructor parameters in psidev.psi.mi.jami.xml.io.iterator with type arguments of type ModelledBinaryInteraction

Constructor	Description
XmlModelledBinaryInteractionIterator(PsiXmlParser<ModelledBinaryInteraction> lineParser)	Constructor for XmlModelledBinaryInteractionIterator.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.xml.io.parser

Methods in psidev.psi.mi.jami.xml.io.parser that return types with arguments of type ModelledBinaryInteraction

Modifier and Type	Method	Description
protected ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction>	FullXmlModelledBinaryParser.initialiseDefaultExpansionMethod()	initialiseDefaultExpansionMethod.
protected ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction>	XmlModelledBinaryParser.initialiseDefaultExpansionMethod()	initialiseDefaultExpansionMethod.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.xml.io.writer.compact

Methods in psidev.psi.mi.jami.xml.io.writer.compact with parameters of type ModelledBinaryInteraction

Modifier and Type	Method	Description
protected void	CompactXmlModelledBinaryWriter.registerAvailabilities(ModelledBinaryInteraction interaction)	registerAvailabilities.
protected void	CompactXmlNamedModelledBinaryWriter.registerAvailabilities(ModelledBinaryInteraction interaction)	registerAvailabilities.
protected void	CompactXmlModelledBinaryWriter.registerExperiment(ModelledBinaryInteraction interaction)	registerExperiment.
protected void	CompactXmlNamedModelledBinaryWriter.registerExperiment(ModelledBinaryInteraction interaction)	registerExperiment.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.xml.io.writer.compact.extended

Methods in psidev.psi.mi.jami.xml.io.writer.compact.extended with parameters of type ModelledBinaryInteraction

Modifier and Type	Method	Description
protected void	CompactXmlModelledBinaryWriter.registerAvailabilities(ModelledBinaryInteraction interaction)	registerAvailabilities.
protected void	CompactXmlModelledBinaryWriter.registerExperiment(ModelledBinaryInteraction interaction)	registerExperiment.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25 with parameters of type ModelledBinaryInteraction

Modifier and Type	Method	Description
protected void	XmlModelledBinaryInteractionWriter.writeAttributes(ModelledBinaryInteraction object)	writeAttributes.
protected CvTerm	XmlModelledBinaryInteractionWriter.writeExperiments(ModelledBinaryInteraction object)	writeExperiments.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30 with parameters of type ModelledBinaryInteraction

Modifier and Type	Method	Description
protected void	XmlModelledBinaryInteractionWriter.writeAttributes(ModelledBinaryInteraction object)	writeAttributes.
protected CvTerm	XmlModelledBinaryInteractionWriter.writeExperiments(ModelledBinaryInteraction object)	writeExperiments.
protected void	XmlModelledBinaryInteractionWriter.writeOtherProperties(ModelledBinaryInteraction object)	writeOtherProperties.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25 with parameters of type ModelledBinaryInteraction

Modifier and Type	Method	Description
protected void	XmlModelledBinaryInteractionWriter.writeAttributes(ModelledBinaryInteraction object)	writeAttributes.
protected CvTerm	XmlModelledBinaryInteractionWriter.writeExperiments(ModelledBinaryInteraction object)	writeExperiments.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml30 with parameters of type ModelledBinaryInteraction

Modifier and Type	Method	Description
protected void	XmlModelledBinaryInteractionWriter.writeAttributes(ModelledBinaryInteraction object)	writeAttributes.
protected CvTerm	XmlModelledBinaryInteractionWriter.writeExperiments(ModelledBinaryInteraction object)	writeExperiments.
protected void	XmlModelledBinaryInteractionWriter.writeOtherProperties(ModelledBinaryInteraction object)	writeOtherProperties.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml25

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml25 with parameters of type ModelledBinaryInteraction

Modifier and Type	Method	Description
protected void	XmlModelledBinaryInteractionWriter.writeAttributes(ModelledBinaryInteraction object)	writeAttributes.
protected CvTerm	XmlModelledBinaryInteractionWriter.writeExperiments(ModelledBinaryInteraction object)	writeExperiments.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml30 with parameters of type ModelledBinaryInteraction

Modifier and Type	Method	Description
protected void	XmlModelledBinaryInteractionWriter.writeAttributes(ModelledBinaryInteraction object)	writeAttributes.
protected void	XmlModelledBinaryInteractionWriter.writeOtherProperties(ModelledBinaryInteraction object)	writeOtherProperties.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml25

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml25 with parameters of type ModelledBinaryInteraction

Modifier and Type	Method	Description
protected void	XmlModelledBinaryInteractionWriter.writeAttributes(ModelledBinaryInteraction object)	writeAttributes.
protected CvTerm	XmlModelledBinaryInteractionWriter.writeExperiments(ModelledBinaryInteraction object)	writeExperiments.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml30 with parameters of type ModelledBinaryInteraction

Modifier and Type	Method	Description
protected void	XmlModelledBinaryInteractionWriter.writeAttributes(ModelledBinaryInteraction object)	writeAttributes.
protected void	XmlModelledBinaryInteractionWriter.writeOtherProperties(ModelledBinaryInteraction object)	writeOtherProperties.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.xml.model.extension.binary

Classes in psidev.psi.mi.jami.xml.model.extension.binary that implement ModelledBinaryInteraction

Modifier and Type	Class	Description
class	XmlModelledBinaryInteraction	Xml implementation of ModelledInteraction
class	XmlModelledBinaryInteractionWrapper	Wrapper for Xml binary interactions

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.xml.model.extension.binary.xml30

Classes in psidev.psi.mi.jami.xml.model.extension.binary.xml30 that implement ModelledBinaryInteraction

Modifier and Type	Class	Description
class	XmlModelledBinaryInteraction	Xml implementation of ModelledInteraction
class	XmlModelledBinaryInteractionWrapper	Wrapper for Xml binary interactions

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.xml.model.extension.datasource

Methods in psidev.psi.mi.jami.xml.model.extension.datasource that return types with arguments of type ModelledBinaryInteraction

Modifier and Type	Method	Description
protected Iterator<ModelledBinaryInteraction>	XmlModelledBinaryStreamSource.createXmlIterator()	createXmlIterator.

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.xml.model.extension.factory.xml25

Methods in psidev.psi.mi.jami.xml.model.extension.factory.xml25 that return ModelledBinaryInteraction

Modifier and Type	Method	Description
ModelledBinaryInteraction	XmlBinaryInteractionFactory.createModelledBinaryInteractionFrom(ModelledInteraction interaction, ModelledParticipant p1, ModelledParticipant p2, CvTerm expansionMethod)	Create a new ModelledBinaryInteraction object from a ModelledInteraction parent and two modelled participants
ModelledBinaryInteraction	XmlBinaryInteractionFactory.createModelledBinaryInteractionWrapperFrom(ModelledInteraction interaction)	Creates a ModelledBinaryInteraction that wraps the given interaction
ModelledBinaryInteraction	XmlBinaryInteractionFactory.createSelfModelledBinaryInteractionFrom(ModelledInteraction interaction)	Creates a ModelledInteraction representing a self interaction

Uses of ModelledBinaryInteraction in psidev.psi.mi.jami.xml.model.extension.factory.xml30

Methods in psidev.psi.mi.jami.xml.model.extension.factory.xml30 that return ModelledBinaryInteraction

Modifier and Type	Method	Description
ModelledBinaryInteraction	XmlBinaryInteractionFactory.createModelledBinaryInteractionFrom(ModelledInteraction interaction, ModelledParticipant p1, ModelledParticipant p2, CvTerm expansionMethod)	Create a new ModelledBinaryInteraction object from a ModelledInteraction parent and two modelled participants
ModelledBinaryInteraction	XmlBinaryInteractionFactory.createModelledBinaryInteractionWrapperFrom(ModelledInteraction interaction)	Creates a ModelledBinaryInteraction that wraps the given interaction
ModelledBinaryInteraction	XmlBinaryInteractionFactory.createSelfModelledBinaryInteractionFrom(ModelledInteraction interaction)	Creates a ModelledInteraction representing a self interaction