Uses of Interface psidev.psi.mi.jami.model.NamedInteraction (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

Packages that use NamedInteraction
Package	Description
psidev.psi.mi.jami.binary.impl
psidev.psi.mi.jami.model
psidev.psi.mi.jami.model.impl
psidev.psi.mi.jami.tab.extension
psidev.psi.mi.jami.xml.model.extension
psidev.psi.mi.jami.xml.model.extension.binary
psidev.psi.mi.jami.xml.model.extension.binary.xml253
psidev.psi.mi.jami.xml.model.extension.binary.xml254
psidev.psi.mi.jami.xml.model.extension.binary.xml30
psidev.psi.mi.jami.xml.model.extension.xml253
psidev.psi.mi.jami.xml.model.extension.xml254
psidev.psi.mi.jami.xml.model.extension.xml300
psidev.psi.mi.jami.xml.model.reference.xml253
psidev.psi.mi.jami.xml.model.reference.xml254
psidev.psi.mi.jami.xml.model.reference.xml300

Uses of NamedInteraction in psidev.psi.mi.jami.binary.impl

Classes in psidev.psi.mi.jami.binary.impl that implement NamedInteraction
Modifier and Type	Class	Description
`class`	`DefaultNamedBinaryInteraction`	Default implementation of a named binary interaction
`class`	`DefaultNamedBinaryInteractionEvidence`	Default implementation of a Named binary interaction evidence
`class`	`DefaultNamedModelledBinaryInteraction`	Default implementation for Named modelled binary interaction

Uses of NamedInteraction in psidev.psi.mi.jami.model

Subinterfaces of NamedInteraction in psidev.psi.mi.jami.model
Modifier and Type	Interface	Description
`interface`	`Complex`	An interactor composed of interacting molecules that can be copurified.

Uses of NamedInteraction in psidev.psi.mi.jami.model.impl

Classes in psidev.psi.mi.jami.model.impl that implement NamedInteraction
Modifier and Type	Class	Description
`class`	`DefaultComplex`	Default implementation for complexes Notes: The equals and hashcode methods have NOT been overridden because the Complex object is a complex object.
`class`	`DefaultNamedInteraction`	Default implementation for Named interaction
`class`	`DefaultNamedInteractionEvidence`	Default implementation for Named InteractionEvidence
`class`	`DefaultNamedModelledInteraction`	Default implementation of Named modelled interaction

Uses of NamedInteraction in psidev.psi.mi.jami.tab.extension

Classes in psidev.psi.mi.jami.tab.extension that implement NamedInteraction
Modifier and Type Class Description

class MitabComplex
Mitab extension for Complex.

Uses of NamedInteraction in psidev.psi.mi.jami.xml.model.extension

Subinterfaces of NamedInteraction in psidev.psi.mi.jami.xml.model.extension
Modifier and Type	Interface	Description
`interface`	`ExtendedPsiXmlInteraction<T extends Participant>`	Extended interaction for PSI-XML 2,5 standards
`interface`	`ExtendedPsiXmlInteractionEvidence`	Extended interaction evidence for PSI-XML 2,5 standards
`interface`	`ExtendedPsiXmlModelledInteraction`	Extended modelled interaction for PSI-XML 2,5 standards
`interface`	`PsiXmlInteraction<T extends Participant>`	Interaction for PSI-XML which contains the entry

Uses of NamedInteraction in psidev.psi.mi.jami.xml.model.extension.binary

Classes in psidev.psi.mi.jami.xml.model.extension.binary that implement NamedInteraction
Modifier and Type	Class	Description
`class`	`AbstractExtendedXmlBinaryInteraction<P extends Participant>`	Abstract class for xml binary interactions
`class`	`AbstractXmlBinaryInteraction<P extends Participant>`	Abstract class for xml binary interactions
`class`	`AbstractXmlBinaryInteractionEvidence`	Abstract class for Xml BinaryInteractionEvidence
`class`	`XmlBinaryInteraction`	Xml implementation of binary interaction
`class`	`XmlBinaryInteractionEvidenceWrapper`	Xml implementation of BinaryInteractionWrapper with a source locator
`class`	`XmlBinaryInteractionWrapper`	Wrapper for ModelledBinaryInteraction
`class`	`XmlModelledBinaryInteraction`	Xml implementation of ModelledInteraction
`class`	`XmlModelledBinaryInteractionWrapper`	Wrapper for Xml binary interactions

Uses of NamedInteraction in psidev.psi.mi.jami.xml.model.extension.binary.xml253

Classes in psidev.psi.mi.jami.xml.model.extension.binary.xml253 that implement NamedInteraction
Modifier and Type	Class	Description
`class`	`XmlBinaryInteractionEvidence`	Xml implementation of BinaryInteractionEvidence

Uses of NamedInteraction in psidev.psi.mi.jami.xml.model.extension.binary.xml254

Classes in psidev.psi.mi.jami.xml.model.extension.binary.xml254 that implement NamedInteraction
Modifier and Type	Class	Description
`class`	`XmlBinaryInteractionEvidence`	Xml implementation of BinaryInteractionEvidence

Uses of NamedInteraction in psidev.psi.mi.jami.xml.model.extension.binary.xml30

Classes in psidev.psi.mi.jami.xml.model.extension.binary.xml30 that implement NamedInteraction
Modifier and Type	Class	Description
`class`	`XmlBinaryInteractionEvidence`	Xml implementation of BinaryInteractionEvidence
`class`	`XmlBinaryInteractionEvidenceWrapper`	Xml implementation of BinaryInteractionWrapper with a source locator
`class`	`XmlModelledBinaryInteraction`	Xml implementation of ModelledInteraction
`class`	`XmlModelledBinaryInteractionWrapper`	Wrapper for Xml binary interactions

Uses of NamedInteraction in psidev.psi.mi.jami.xml.model.extension.xml253

Classes in psidev.psi.mi.jami.xml.model.extension.xml253 that implement NamedInteraction
Modifier and Type	Class	Description
`class`	`AbstractPsiXmlInteraction<T extends Participant>`	Abstract class for xml interactions implementing ExtendedPsiXmlInteraction interface
`class`	`AbstractXmlBasicInteraction`	Xml implementation of interaction
`class`	`AbstractXmlComplex`	Xml implementation for complex
`class`	`AbstractXmlInteraction<T extends Participant>`	Abstract class for xml interactions
`class`	`AbstractXmlInteractionEvidence`	Xml implementation of InteractionEvidence
`class`	`AbstractXmlModelledInteraction`	Xml implementation of ModelledInteraction
`class`	`DefaultXmlBasicInteraction`	Xml implementation of interaction
`class`	`DefaultXmlComplex`	Xml implementation for complex
`class`	`DefaultXmlInteractionEvidence`	Xml implementation of InteractionEvidence
`class`	`DefaultXmlModelledInteraction`	Xml implementation of ModelledInteraction
`class`	`XmlBasicInteraction`	Xml implementation of interaction
`class`	`XmlBasicInteractionComplexWrapper`	Wrapper of basic interactions If we add new modelled participants/remove participants, they will be added/removed from the list of participants of the wrapped interaction.
`class`	`XmlComplex`	Xml implementation of ModelledInteraction
`class`	`XmlInteractionEvidence`	Xml implementation of InteractionEvidence
`class`	`XmlInteractionEvidenceComplexWrapper`	Xml wrapper for interaction evidences used as complex
`class`	`XmlModelledInteraction`	Xml implementation of ModelledInteraction
`class`	`XmlModelledInteractionComplexWrapper`	Wrapper for complexes that were loaded as abstract interactions

Uses of NamedInteraction in psidev.psi.mi.jami.xml.model.extension.xml254

Classes in psidev.psi.mi.jami.xml.model.extension.xml254 that implement NamedInteraction
Modifier and Type	Class	Description
`class`	`AbstractPsiXmlInteraction<T extends Participant>`	Abstract class for xml interactions implementing ExtendedPsiXmlInteraction interface
`class`	`AbstractXmlBasicInteraction`	Xml implementation of interaction
`class`	`AbstractXmlComplex`	Xml implementation for complex
`class`	`AbstractXmlInteraction<T extends Participant>`	Abstract class for xml interactions
`class`	`AbstractXmlInteractionEvidence`	Xml implementation of InteractionEvidence
`class`	`AbstractXmlModelledInteraction`	Xml implementation of ModelledInteraction
`class`	`DefaultXmlBasicInteraction`	Xml implementation of interaction
`class`	`DefaultXmlComplex`	Xml implementation for complex
`class`	`DefaultXmlInteractionEvidence`	Xml implementation of InteractionEvidence
`class`	`DefaultXmlModelledInteraction`	Xml implementation of ModelledInteraction
`class`	`XmlBasicInteraction`	Xml implementation of interaction
`class`	`XmlBasicInteractionComplexWrapper`	Wrapper of basic interactions If we add new modelled participants/remove participants, they will be added/removed from the list of participants of the wrapped interaction.
`class`	`XmlComplex`	Xml implementation of ModelledInteraction
`class`	`XmlInteractionEvidence`	Xml implementation of InteractionEvidence
`class`	`XmlInteractionEvidenceComplexWrapper`	Xml wrapper for interaction evidences used as complex
`class`	`XmlModelledInteraction`	Xml implementation of ModelledInteraction
`class`	`XmlModelledInteractionComplexWrapper`	Wrapper for complexes that were loaded as abstract interactions

Uses of NamedInteraction in psidev.psi.mi.jami.xml.model.extension.xml300

Subinterfaces of NamedInteraction in psidev.psi.mi.jami.xml.model.extension.xml300
Modifier and Type	Interface	Description
`interface`	`ExtendedPsiXmlInteractionEvidence`	Extended interaction evidence for PSI-XML 2,5 standards
`interface`	`ExtendedPsiXmlModelledInteraction`	Extended interaction for PSI-XML 2,5 standards

Classes in psidev.psi.mi.jami.xml.model.extension.xml300 that implement NamedInteraction
Modifier and Type	Class	Description
`class`	`AbstractPsiXmlInteraction<T extends Participant>`	Abstract class for xml interactions implementing ExtendedPsiXmlInteraction interface
`class`	`AbstractXmlBasicInteraction`	Xml implementation of interaction
`class`	`AbstractXmlComplex`	Xml implementation for complex
`class`	`AbstractXmlInteraction<T extends Participant>`	Abstract class for xml interactions
`class`	`AbstractXmlInteractionEvidence`	Xml implementation of InteractionEvidence
`class`	`AbstractXmlModelledInteraction`	Xml implementation of ModelledInteraction
`class`	`DefaultXmlBasicInteraction`	Xml implementation of interaction
`class`	`DefaultXmlComplex`	Xml implementation for complex
`class`	`DefaultXmlInteractionEvidence`	Xml implementation of InteractionEvidence
`class`	`DefaultXmlModelledInteraction`	Xml implementation of ModelledInteraction
`class`	`XmlBasicInteraction`	Xml implementation of interaction
`class`	`XmlBasicInteractionComplexWrapper`	Wrapper of basic interactions If we add new modelled participants/remove participants, they will be added/removed from the list of participants of the wrapped interaction.
`class`	`XmlComplex`	Xml implementation of ModelledInteraction
`class`	`XmlInteractionEvidence`	Xml implementation of InteractionEvidence
`class`	`XmlInteractionEvidenceComplexWrapper`	Xml wrapper for interaction evidences used as complex
`class`	`XmlModelledInteraction`	Xml 3.0.0 implementation of ModelledInteraction
`class`	`XmlModelledInteractionComplexWrapper`	Wrapper for complexes that were loaded as abstract interactions

Uses of NamedInteraction in psidev.psi.mi.jami.xml.model.reference.xml253

Classes in psidev.psi.mi.jami.xml.model.reference.xml253 that implement NamedInteraction
Modifier and Type	Class	Description
`class`	`AbstractComplexRef`	Abstract class for references to a complex

Uses of NamedInteraction in psidev.psi.mi.jami.xml.model.reference.xml254

Classes in psidev.psi.mi.jami.xml.model.reference.xml254 that implement NamedInteraction
Modifier and Type	Class	Description
`class`	`AbstractComplexRef`	Abstract class for references to a complex

Uses of NamedInteraction in psidev.psi.mi.jami.xml.model.reference.xml300

Classes in psidev.psi.mi.jami.xml.model.reference.xml300 that implement NamedInteraction
Modifier and Type	Class	Description
`class`	`AbstractComplexRef`	Abstract class for references to a complex