Uses of Interface
psidev.psi.mi.jami.model.Parameter

Packages that use Parameter

Package	Description
psidev.psi.mi.jami.binary.impl
psidev.psi.mi.jami.enricher.listener.impl
psidev.psi.mi.jami.enricher.listener.impl.writer
psidev.psi.mi.jami.enricher.util
psidev.psi.mi.jami.json.elements
psidev.psi.mi.jami.listener
psidev.psi.mi.jami.listener.impl
psidev.psi.mi.jami.model
psidev.psi.mi.jami.model.impl
psidev.psi.mi.jami.tab.extension
psidev.psi.mi.jami.tab.io.writer.feeder
psidev.psi.mi.jami.utils
psidev.psi.mi.jami.utils.comparator
psidev.psi.mi.jami.utils.comparator.interaction
psidev.psi.mi.jami.utils.comparator.parameter
psidev.psi.mi.jami.utils.comparator.participant
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml253
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml254
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30
psidev.psi.mi.jami.xml.model.extension.binary
psidev.psi.mi.jami.xml.model.extension.xml253
psidev.psi.mi.jami.xml.model.extension.xml254
psidev.psi.mi.jami.xml.model.extension.xml300

Uses of Parameter in psidev.psi.mi.jami.binary.impl

Methods in psidev.psi.mi.jami.binary.impl that return types with arguments of type Parameter

Modifier and Type	Method	Description
Collection<Parameter>	BinaryInteractionEvidenceWrapper.getParameters()	getParameters
Collection<Parameter>	DefaultBinaryInteractionEvidence.getParameters()	Getter for the field parameters.

Method parameters in psidev.psi.mi.jami.binary.impl with type arguments of type Parameter

Modifier and Type	Method	Description
protected void	DefaultBinaryInteractionEvidence.initialiseExperimentalParametersWith(Collection<Parameter> parameters)	initialiseExperimentalParametersWith

Uses of Parameter in psidev.psi.mi.jami.enricher.listener.impl

Methods in psidev.psi.mi.jami.enricher.listener.impl with parameters of type Parameter

Modifier and Type	Method	Description
void	FeatureEvidenceEnricherListenerManager.onAddedParameter(FeatureEvidence o, Parameter added)	Listen to the event where a parameter has been added to the object parameters.
void	InteractionEvidenceEnricherListenerManager.onAddedParameter(InteractionEvidence o, Parameter added)	Listen to the event where a parameter has been added to the object parameters.
void	ModelledInteractionEnricherListenerManager.onAddedParameter(I o, Parameter added)	Listen to the event where a parameter has been added to the object parameters.
void	ParticipantEvidenceEnricherListenerManager.onAddedParameter(P o, Parameter added)	Listen to the event where a parameter has been added to the object parameters.
void	FeatureEvidenceEnricherListenerManager.onRemovedParameter(FeatureEvidence o, Parameter removed)	Listen to the event where a parameter has been removed from the object parameters.
void	InteractionEvidenceEnricherListenerManager.onRemovedParameter(InteractionEvidence o, Parameter removed)	Listen to the event where a parameter has been removed from the object parameters.
void	ModelledInteractionEnricherListenerManager.onRemovedParameter(I o, Parameter removed)	Listen to the event where a parameter has been removed from the object parameters.
void	ParticipantEvidenceEnricherListenerManager.onRemovedParameter(P o, Parameter removed)	Listen to the event where a parameter has been removed from the object parameters.

Uses of Parameter in psidev.psi.mi.jami.enricher.listener.impl.writer

Methods in psidev.psi.mi.jami.enricher.listener.impl.writer with parameters of type Parameter

Modifier and Type	Method	Description
void	FeatureEvidenceEnricherStatisticsWriter.onAddedParameter(FeatureEvidence o, Parameter added)	Listen to the event where a parameter has been added to the object parameters.
void	InteractionEvidenceEnricherStatisticsWriter.onAddedParameter(InteractionEvidence o, Parameter added)	Listen to the event where a parameter has been added to the object parameters.
void	ModelledInteractionEnricherStatisticsWriter.onAddedParameter(I o, Parameter added)	Listen to the event where a parameter has been added to the object parameters.
void	ParticipantEvidenceEnricherStatisticsWriter.onAddedParameter(P o, Parameter added)	Listen to the event where a parameter has been added to the object parameters.
void	FeatureEvidenceEnricherStatisticsWriter.onRemovedParameter(FeatureEvidence o, Parameter removed)	Listen to the event where a parameter has been removed from the object parameters.
void	InteractionEvidenceEnricherStatisticsWriter.onRemovedParameter(InteractionEvidence o, Parameter removed)	Listen to the event where a parameter has been removed from the object parameters.
void	ModelledInteractionEnricherStatisticsWriter.onRemovedParameter(I o, Parameter removed)	Listen to the event where a parameter has been removed from the object parameters.
void	ParticipantEvidenceEnricherStatisticsWriter.onRemovedParameter(P o, Parameter removed)	Listen to the event where a parameter has been removed from the object parameters.

Uses of Parameter in psidev.psi.mi.jami.enricher.util

Methods in psidev.psi.mi.jami.enricher.util with type parameters of type Parameter

Modifier and Type	Method	Description
static <T,P extends Parameter> void	EnricherUtils.mergeParameters(T termToEnrich, Collection<P> toEnrichParameters, Collection<P> fetchedParameters, boolean remove, ParametersChangeListener<T> paramListener)	mergeParameters.

Uses of Parameter in psidev.psi.mi.jami.json.elements

Methods in psidev.psi.mi.jami.json.elements that return types with arguments of type Parameter

Modifier and Type	Method	Description
JsonElementWriter<Parameter>	SimpleJsonFeatureEvidenceWriter.getParameterWriter()	Getter for the field parameterWriter.
JsonElementWriter<Parameter>	SimpleJsonInteractionEvidenceWriter.getParameterWriter()	Getter for the field parameterWriter.
JsonElementWriter<Parameter>	SimpleJsonModelledInteractionWriter.getParameterWriter()	Getter for the field parameterWriter.
JsonElementWriter<Parameter>	SimpleJsonParticipantEvidenceWriter.getParameterWriter()	Getter for the field parameterWriter.

Methods in psidev.psi.mi.jami.json.elements with parameters of type Parameter

Modifier and Type	Method	Description
void	SimpleJsonParameterWriter.write(Parameter object)	write.

Method parameters in psidev.psi.mi.jami.json.elements with type arguments of type Parameter

Modifier and Type	Method	Description
void	SimpleJsonFeatureEvidenceWriter.setParameterWriter(JsonElementWriter<Parameter> parameterWriter)	Setter for the field parameterWriter.
void	SimpleJsonInteractionEvidenceWriter.setParameterWriter(JsonElementWriter<Parameter> parameterWriter)	Setter for the field parameterWriter.
void	SimpleJsonModelledInteractionWriter.setParameterWriter(JsonElementWriter<Parameter> parameterWriter)	Setter for the field parameterWriter.
void	SimpleJsonParticipantEvidenceWriter.setParameterWriter(JsonElementWriter<Parameter> parameterWriter)	Setter for the field parameterWriter.

Uses of Parameter in psidev.psi.mi.jami.listener

Methods in psidev.psi.mi.jami.listener with parameters of type Parameter

Modifier and Type	Method	Description
void	ParametersChangeListener.onAddedParameter(T o, Parameter added)	Listen to the event where a parameter has been added to the object parameters.
void	ParametersChangeListener.onRemovedParameter(T o, Parameter removed)	Listen to the event where a parameter has been removed from the object parameters.

Uses of Parameter in psidev.psi.mi.jami.listener.impl

Methods in psidev.psi.mi.jami.listener.impl with parameters of type Parameter

Modifier and Type	Method	Description
void	ComplexChangeLogger.onAddedParameter(Complex o, Parameter added)	Listen to the event where a parameter has been added to the object parameters.
void	FeatureEvidenceChangeLogger.onAddedParameter(FeatureEvidence feature, Parameter added)	Listen to the event where a parameter has been added to the object parameters.
void	InteractionEvidenceChangeLogger.onAddedParameter(InteractionEvidence o, Parameter added)	Listen to the event where a parameter has been added to the object parameters.
void	ModelledInteractionChangeLogger.onAddedParameter(I o, Parameter added)	Listen to the event where a parameter has been added to the object parameters.
void	ParticipantEvidenceChangeLogger.onAddedParameter(T o, Parameter added)	Listen to the event where a parameter has been added to the object parameters.
void	ComplexChangeLogger.onRemovedParameter(Complex o, Parameter removed)	Listen to the event where a parameter has been removed from the object parameters.
void	FeatureEvidenceChangeLogger.onRemovedParameter(FeatureEvidence feature, Parameter removed)	Listen to the event where a parameter has been removed from the object parameters.
void	InteractionEvidenceChangeLogger.onRemovedParameter(InteractionEvidence o, Parameter removed)	Listen to the event where a parameter has been removed from the object parameters.
void	ModelledInteractionChangeLogger.onRemovedParameter(I o, Parameter removed)	Listen to the event where a parameter has been removed from the object parameters.
void	ParticipantEvidenceChangeLogger.onRemovedParameter(T o, Parameter removed)	Listen to the event where a parameter has been removed from the object parameters.

Uses of Parameter in psidev.psi.mi.jami.model

Subinterfaces of Parameter in psidev.psi.mi.jami.model

Modifier and Type	Interface	Description
interface	ModelledParameter	A modelled parameter is a parameter for a modelled interaction.

Methods in psidev.psi.mi.jami.model with type parameters of type Parameter

Modifier and Type	Method	Description
<P extends Parameter> Collection<P>	FeatureEvidence.getParameters()	Numerical parameters associated with this feature.
<P extends Parameter> Collection<P>	InteractionEvidence.getParameters()	Collection of numerical parameters for this interaction.
<P extends Parameter> Collection<P>	ParticipantEvidence.getParameters()	Numerical parameters associated with this participant.

Uses of Parameter in psidev.psi.mi.jami.model.impl

Classes in psidev.psi.mi.jami.model.impl that implement Parameter

Modifier and Type	Class	Description
class	DefaultModelledParameter	Default implementation for ModelledParameter Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousParameterComparator
class	DefaultParameter	Default implementation for Parameter Notes: The equals and hashcode methods have been overridden to be consistent with UnambiguousParameterComparator

Methods in psidev.psi.mi.jami.model.impl that return types with arguments of type Parameter

Modifier and Type	Method	Description
Collection<Parameter>	DefaultExperimentalParticipantPool.getParameters()	Getter for the field parameters.
Collection<Parameter>	DefaultFeatureEvidence.getParameters()	Getter for the field parameters.
Collection<Parameter>	DefaultInteractionEvidence.getParameters()	Getter for the field parameters.
Collection<Parameter>	DefaultParticipantEvidence.getParameters()	Getter for the field parameters.

Method parameters in psidev.psi.mi.jami.model.impl with type arguments of type Parameter

Modifier and Type	Method	Description
protected void	DefaultInteractionEvidence.initialiseExperimentalParametersWith(Collection<Parameter> parameters)	initialiseExperimentalParametersWith
protected void	DefaultExperimentalParticipantPool.initialiseParametersWith(Collection<Parameter> parameters)	initialiseParametersWith
protected void	DefaultFeatureEvidence.initialiseParametersWith(Collection<Parameter> parameters)	initialiseParametersWith
protected void	DefaultParticipantEvidence.initialiseParametersWith(Collection<Parameter> parameters)	initialiseParametersWith

Uses of Parameter in psidev.psi.mi.jami.tab.extension

Classes in psidev.psi.mi.jami.tab.extension that implement Parameter

Modifier and Type	Class	Description
class	MitabParameter	Mitab extension of Parameter

Uses of Parameter in psidev.psi.mi.jami.tab.io.writer.feeder

Methods in psidev.psi.mi.jami.tab.io.writer.feeder with parameters of type Parameter

Modifier and Type	Method	Description
void	AbstractMitabColumnFeeder.writeParameter(Parameter parameter)	Writes the parameter
void	DefaultMitabColumnFeeder.writeParameter(Parameter parameter)	Writes the parameter
void	MitabColumnFeeder.writeParameter(Parameter parameter)	Writes the parameter

Uses of Parameter in psidev.psi.mi.jami.utils

Methods in psidev.psi.mi.jami.utils that return Parameter

Modifier and Type	Method	Description
static Parameter	ParameterUtils.createParameterFromString(String type, String value)	createParameterFromString
static Parameter	ParameterUtils.createParameterFromString(String type, String value, String unit)	createParameterFromString
static Parameter	ParameterUtils.createParameterFromString(CvTerm type, String value)	createParameterFromString
static Parameter	ParameterUtils.createParameterFromString(CvTerm type, String value, CvTerm unit)	createParameterFromString

Methods in psidev.psi.mi.jami.utils with parameters of type Parameter

Modifier and Type	Method	Description
static String	ParameterUtils.getParameterValueAsString(Parameter param)	getParameterValueAsString

Uses of Parameter in psidev.psi.mi.jami.utils.comparator

Method parameters in psidev.psi.mi.jami.utils.comparator with type arguments of type Parameter

Modifier and Type	Method	Description
static boolean	ComparatorUtils.areParametersEqual(Collection<? extends Parameter> method1, Collection<? extends Parameter> method2)	areParametersEqual

Uses of Parameter in psidev.psi.mi.jami.utils.comparator.interaction

Methods in psidev.psi.mi.jami.utils.comparator.interaction that return types with arguments of type Parameter

Modifier and Type	Method	Description
CollectionComparator<Parameter>	InteractionEvidenceComparator.getParameterCollectionComparator()	Getter for the field parameterCollectionComparator.

Uses of Parameter in psidev.psi.mi.jami.utils.comparator.parameter

Methods in psidev.psi.mi.jami.utils.comparator.parameter with parameters of type Parameter

Modifier and Type	Method	Description
static boolean	DefaultParameterComparator.areEquals(Parameter parameter1, Parameter parameter2)	Use DefaultComparator to know if two parameters are equals.
static boolean	UnambiguousParameterComparator.areEquals(Parameter param1, Parameter param2)	Use UnabmbiguousComparatorParameter to know if two parameters are equals.
int	ParameterComparator.compare(Parameter parameter1, Parameter parameter2)	It first compares parameter types, then parameter units and then it uses ParameterValueComparator for comparing parameter values It will also compare the uncertainty.
int	UnambiguousParameterComparator.compare(Parameter parameter1, Parameter parameter2)	It first compares parameter types, then parameter units and then it uses ParameterValueComparator for comparing parameter values It will also compare the uncertainty.
static int	UnambiguousParameterComparator.hashCode(Parameter param)	hashCode

Uses of Parameter in psidev.psi.mi.jami.utils.comparator.participant

Methods in psidev.psi.mi.jami.utils.comparator.participant that return types with arguments of type Parameter

Modifier and Type	Method	Description
CollectionComparator<Parameter>	ExperimentalParticipantPoolComparator.getParameterCollectionComparator()	Getter for the field parameterCollectionComparator.

Constructor parameters in psidev.psi.mi.jami.utils.comparator.participant with type arguments of type Parameter

Constructor	Description
ExperimentalParticipantPoolComparator(ParticipantBaseComparator participantBaseComparator, OrganismComparator organismComparator, CollectionComparator<Parameter> parameterComparator, CollectionComparator<FeatureEvidence> featureComparator, CollectionComparator<ExperimentalEntity> entityComparator, CollectionComparator<CvTerm> cvTermComparator)	Creates a new ExperimentalParticipantPoolComparator

Uses of Parameter in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts that return types with arguments of type Parameter

Modifier and Type	Method	Description
PsiXmlElementWriter<Parameter>	AbstractXmlParticipantEvidenceWriter.getParameterWriter()	Getter for the field parameterWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts with parameters of type Parameter

Modifier and Type	Method	Description
void	AbstractXmlParameterWriter.write(Parameter object)	write.
protected abstract void	AbstractXmlParameterWriter.writeOtherProperties(Parameter object)	writeOtherProperties.

Method parameters in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts with type arguments of type Parameter

Modifier and Type	Method	Description
void	AbstractXmlParticipantEvidenceWriter.setParameterWriter(PsiXmlElementWriter<Parameter> parameterWriter)	Setter for the field parameterWriter.

Uses of Parameter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml253

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml253 with parameters of type Parameter

Modifier and Type	Method	Description
protected void	XmlParameterWriter.writeOtherProperties(Parameter object)	writeOtherProperties.

Uses of Parameter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml254

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml254 with parameters of type Parameter

Modifier and Type	Method	Description
protected void	XmlParameterWriter.writeOtherProperties(Parameter object)	writeOtherProperties.

Uses of Parameter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30 with parameters of type Parameter

Modifier and Type	Method	Description
protected void	XmlParameterWriter.writeOtherProperties(Parameter object)	writeOtherProperties.

Uses of Parameter in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml25

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml25 with parameters of type Parameter

Modifier and Type	Method	Description
protected void	XmlParameterWriter.writeOtherProperties(Parameter object)	writeOtherProperties.

Uses of Parameter in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30 with parameters of type Parameter

Modifier and Type	Method	Description
protected void	XmlModelledParameterWriter.writeOtherProperties(Parameter object)	writeOtherProperties.
protected void	XmlParameterWriter.writeOtherProperties(Parameter object)	writeOtherProperties.

Uses of Parameter in psidev.psi.mi.jami.xml.model.extension.binary

Methods in psidev.psi.mi.jami.xml.model.extension.binary that return types with arguments of type Parameter

Modifier and Type	Method	Description
Collection<Parameter>	AbstractXmlBinaryInteractionEvidence.getParameters()	Getter for the field parameters.
Collection<Parameter>	XmlBinaryInteractionEvidenceWrapper.getParameters()	Collection of numerical parameters for this interaction.

Uses of Parameter in psidev.psi.mi.jami.xml.model.extension.xml253

Classes in psidev.psi.mi.jami.xml.model.extension.xml253 that implement Parameter

Modifier and Type	Class	Description
class	AbstractXmlParameter	Abstract Xml implementation of Parameter
class	XmlModelledParameter	Xml implementation of ModelledParameter
class	XmlParameter	Xml implementation of Parameter
class	XmlParameterWrapper	Xml parameter wrapper

Methods in psidev.psi.mi.jami.xml.model.extension.xml253 that return types with arguments of type Parameter

Modifier and Type	Method	Description
List<Parameter>	AbstractXmlInteractionEvidence.JAXBParameterWrapper.getJAXBParameters()
List<Parameter>	XmlFeatureEvidence.JAXBParameterWrapper.getJAXBParameters()
List<Parameter>	XmlParticipantEvidence.JAXBParameterWrapper.getJAXBParameters()
Collection<Parameter>	AbstractXmlInteractionEvidence.getParameters()	getParameters.
Collection<Parameter>	XmlExperimentalParticipantPool.getParameters()	Numerical parameters associated with this participant.
Collection<Parameter>	XmlFeatureEvidence.getParameters()	Numerical parameters associated with this feature.
Collection<Parameter>	XmlParticipantEvidence.getParameters()	getParameters.

Constructors in psidev.psi.mi.jami.xml.model.extension.xml253 with parameters of type Parameter

Constructor	Description
XmlParameterWrapper(Parameter param)	Constructor for XmlParameterWrapper.

Uses of Parameter in psidev.psi.mi.jami.xml.model.extension.xml254

Classes in psidev.psi.mi.jami.xml.model.extension.xml254 that implement Parameter

Modifier and Type	Class	Description
class	AbstractXmlParameter	Abstract Xml implementation of Parameter
class	XmlModelledParameter	Xml implementation of ModelledParameter
class	XmlParameter	Xml implementation of Parameter
class	XmlParameterWrapper	Xml parameter wrapper

Methods in psidev.psi.mi.jami.xml.model.extension.xml254 that return types with arguments of type Parameter

Modifier and Type	Method	Description
List<Parameter>	AbstractXmlInteractionEvidence.JAXBParameterWrapper.getJAXBParameters()
List<Parameter>	XmlFeatureEvidence.JAXBParameterWrapper.getJAXBParameters()
List<Parameter>	XmlParticipantEvidence.JAXBParameterWrapper.getJAXBParameters()
Collection<Parameter>	AbstractXmlInteractionEvidence.getParameters()	getParameters.
Collection<Parameter>	XmlExperimentalParticipantPool.getParameters()	Numerical parameters associated with this participant.
Collection<Parameter>	XmlFeatureEvidence.getParameters()	Numerical parameters associated with this feature.
Collection<Parameter>	XmlParticipantEvidence.getParameters()	getParameters.

Constructors in psidev.psi.mi.jami.xml.model.extension.xml254 with parameters of type Parameter

Constructor	Description
XmlParameterWrapper(Parameter param)	Constructor for XmlParameterWrapper.

Uses of Parameter in psidev.psi.mi.jami.xml.model.extension.xml300

Classes in psidev.psi.mi.jami.xml.model.extension.xml300 that implement Parameter

Modifier and Type	Class	Description
class	AbstractXmlParameter	Abstract Xml implementation of Parameter
class	XmlModelledParameter	Xml 3.0 implementation of ModelledParameter
class	XmlParameter	Xml implementation of Parameter
class	XmlParameterWrapper	Xml parameter wrapper

Methods in psidev.psi.mi.jami.xml.model.extension.xml300 that return types with arguments of type Parameter

Modifier and Type	Method	Description
List<Parameter>	AbstractXmlInteractionEvidence.JAXBParameterWrapper.getJAXBParameters()
List<Parameter>	XmlFeatureEvidence.JAXBParameterWrapper.getJAXBParameters()
List<Parameter>	XmlParticipantEvidence.JAXBParameterWrapper.getJAXBParameters()
Collection<Parameter>	AbstractXmlInteractionEvidence.getParameters()	getParameters.
Collection<Parameter>	XmlExperimentalParticipantPool.getParameters()	Numerical parameters associated with this participant.
Collection<Parameter>	XmlFeatureEvidence.getParameters()	Numerical parameters associated with this feature.
Collection<Parameter>	XmlParticipantEvidence.getParameters()	getParameters.

Constructors in psidev.psi.mi.jami.xml.model.extension.xml300 with parameters of type Parameter

Constructor	Description
XmlParameterWrapper(Parameter param)	Constructor for XmlParameterWrapper.