Uses of Class psidev.psi.mi.jami.exception.MIIOException (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

Packages that use MIIOException
Package	Description
psidev.psi.mi.jami.crosslink.extension.datasource
psidev.psi.mi.jami.crosslink.io.iterator
psidev.psi.mi.jami.datasource
psidev.psi.mi.jami.html
psidev.psi.mi.jami.json.binary
psidev.psi.mi.jami.json.nary
psidev.psi.mi.jami.tab.extension.datasource
psidev.psi.mi.jami.tab.io.iterator
psidev.psi.mi.jami.tab.io.writer
psidev.psi.mi.jami.tab.io.writer.extended
psidev.psi.mi.jami.xml.io.iterator
psidev.psi.mi.jami.xml.io.parser
psidev.psi.mi.jami.xml.io.writer
psidev.psi.mi.jami.xml.io.writer.compact
psidev.psi.mi.jami.xml.io.writer.elements
psidev.psi.mi.jami.xml.io.writer.elements.impl
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml253
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml254
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30
psidev.psi.mi.jami.xml.io.writer.expanded
psidev.psi.mi.jami.xml.model.extension.datasource

Uses of MIIOException in psidev.psi.mi.jami.crosslink.extension.datasource

Methods in psidev.psi.mi.jami.crosslink.extension.datasource that throw MIIOException
Modifier and Type	Method	Description
`void`	AbstractCsvSource.`close()`	close.
`void`	AbstractCsvStreamSource.`close()`	close.
`void`	CsvMixedEvidenceSource.`close()`	close.
`void`	CsvNaryEvidenceSource.`close()`	close.
`Collection<T>`	AbstractCsvSource.`getInteractions()`	Getter for the field `interactions`.
`Collection<InteractionEvidence>`	CsvMixedEvidenceSource.`getInteractions()`	getInteractions.
`Collection<InteractionEvidence>`	CsvNaryEvidenceSource.`getInteractions()`	getInteractions.
`Iterator<InteractionEvidence>`	CsvMixedEvidenceSource.`getInteractionsIterator()`	getInteractionsIterator.
`Iterator<InteractionEvidence>`	CsvNaryEvidenceSource.`getInteractionsIterator()`	getInteractionsIterator.
`protected void`	AbstractCsvSource.`reInit()`	reInit.
`protected void`	AbstractCsvStreamSource.`reInit()`	reInit.
`void`	AbstractCsvSource.`reset()`	reset.
`void`	AbstractCsvStreamSource.`reset()`	reset.
`void`	CsvMixedEvidenceSource.`reset()`	reset.
`void`	CsvNaryEvidenceSource.`reset()`	reset.
`boolean`	CsvMixedEvidenceSource.`validateSyntax()`	validateSyntax.
`boolean`	CsvMixedEvidenceSource.`validateSyntax(MIFileParserListener listener)`	Validate the syntax of this MIFileDataSource and uses the provided MIFileParserListener to listen to the events.
`boolean`	CsvNaryEvidenceSource.`validateSyntax()`	validateSyntax.
`boolean`	CsvNaryEvidenceSource.`validateSyntax(MIFileParserListener listener)`	Validate the syntax of this MIFileDataSource and uses the provided MIFileParserListener to listen to the events.

Uses of MIIOException in psidev.psi.mi.jami.crosslink.io.iterator

Methods in psidev.psi.mi.jami.crosslink.io.iterator that throw MIIOException
Modifier and Type	Method	Description
`T`	CsvInteractionEvidenceIterator.`next()`	next.

Constructors in psidev.psi.mi.jami.crosslink.io.iterator that throw MIIOException
Constructor	Description
`CsvInteractionEvidenceIterator(com.googlecode.jcsv.reader.CSVReader<T> lineParser)`	Constructor for CsvInteractionEvidenceIterator.
`CsvInteractionEvidenceIterator(com.googlecode.jcsv.reader.CSVReader<T> lineParser, CsvParserListener listener)`	Constructor for CsvInteractionEvidenceIterator.

Uses of MIIOException in psidev.psi.mi.jami.datasource

Methods in psidev.psi.mi.jami.datasource that throw MIIOException
Modifier and Type	Method	Description
`void`	InteractionWriter.`close()`	Closes the InteractionWriter.
`void`	MIDataSource.`close()`	This method close the file data source and all opened streams and readers
`void`	InteractionWriter.`end()`	Method to call when we reach the end
`void`	InteractionWriter.`flush()`	Flushes the writer (commit or write on disk)
`Iterator<CvTerm>`	CvTermStream.`getCvTermsIterator()`	The CV terms iterator for this datasource.
`Iterator<Experiment>`	ExperimentStream.`getExperimentsIterator()`	The experiments iterator for this datasource.
`Collection<T>`	InteractionSource.`getInteractions()`	The collection of Interactions for this datasource
`Iterator<T>`	InteractionStream.`getInteractionsIterator()`	The iterator of Interactions for this datasource
`Iterator<T>`	InteractorStream.`getInteractorsIterator()`	The interactors iterator for this datasource.
`Iterator<Organism>`	OrganismStream.`getOrganismsIterator()`	The organisms iterator for this datasource.
`Iterator<Publication>`	PublicationStream.`getPublicationsIterator()`	The publications iterator for this datasource.
`void`	InteractionWriter.`reset()`	This method will reset the writer from all loaded options.
`void`	MIDataSource.`reset()`	This method will reset the data sources from all loaded options.
`void`	InteractionWriter.`start()`	Method to call before starting to write but after initialising the context
`boolean`	MIFileDataSource.`validateSyntax()`	Validate the syntax of this MIFileDataSource.
`boolean`	MIFileDataSource.`validateSyntax(MIFileParserListener listener)`	Validate the syntax of this MIFileDataSource and uses the provided MIFileParserListener to listen to the events.
`void`	InteractionWriter.`write(Collection<? extends T> interactions)`	Writes a collection of Interaction objects
`void`	InteractionWriter.`write(Iterator<? extends T> interactions)`	Writes Interaction objects using iterator
`void`	InteractionWriter.`write(T interaction)`	Writes an interaction

Uses of MIIOException in psidev.psi.mi.jami.html

Methods in psidev.psi.mi.jami.html that throw MIIOException
Modifier and Type	Method	Description
`void`	AbstractMIHtmlWriter.`close()`	close
`void`	MIHtmlWriter.`close()`	close
`void`	AbstractMIHtmlWriter.`end()`	end
`void`	AbstractMIHtmlWriter.`flush()`	flush
`void`	AbstractMIHtmlWriter.`reset()`	reset
`void`	MIHtmlWriter.`reset()`	reset
`void`	AbstractMIHtmlWriter.`start()`	start
`void`	AbstractMIHtmlWriter.`write(Collection<? extends T> interactions)`	write
`void`	AbstractMIHtmlWriter.`write(Iterator<? extends T> interactions)`	Writes Interaction objects using iterator
`void`	AbstractMIHtmlWriter.`write(T interaction)`	write
`void`	MIHtmlWriter.`write(Collection<? extends Interaction> interactions)`	write
`void`	MIHtmlWriter.`write(Iterator<? extends Interaction> interactions)`	Writes Interaction objects using iterator
`void`	MIHtmlWriter.`write(Interaction interaction)`	write

Uses of MIIOException in psidev.psi.mi.jami.json.binary

Methods in psidev.psi.mi.jami.json.binary that throw MIIOException
Modifier and Type	Method	Description
`void`	AbstractMIJsonBinaryWriter.`close()`	close.
`void`	AbstractMIJsonWriter.`close()`	close.
`void`	MIJsonBinaryWriter.`close()`	close.
`void`	AbstractMIJsonWriter.`end()`	end.
`void`	AbstractMIJsonBinaryWriter.`flush()`	flush.
`void`	AbstractMIJsonWriter.`flush()`	flush.
`void`	MIJsonBinaryWriter.`flush()`	flush.
`void`	AbstractMIJsonBinaryWriter.`reset()`	reset.
`void`	AbstractMIJsonWriter.`reset()`	reset.
`void`	MIJsonBinaryWriter.`reset()`	reset.
`void`	AbstractMIJsonWriter.`start()`	start.
`void`	AbstractMIJsonWriter.`write(I interaction)`	write.
`void`	AbstractMIJsonWriter.`write(Collection<? extends I> interactions)`	write.
`void`	AbstractMIJsonWriter.`write(Iterator<? extends I> interactions)`	Writes Interaction objects using iterator
`void`	MIJsonBinaryWriter.`write(BinaryInteraction interaction)`	write.

Uses of MIIOException in psidev.psi.mi.jami.json.nary

Methods in psidev.psi.mi.jami.json.nary that throw MIIOException
Modifier and Type	Method	Description
`void`	AbstractMIJsonWriter.`close()`	close.
`void`	MIJsonEvidenceWriter.`close()`	close.
`void`	MIJsonWriter.`close()`	close.
`void`	AbstractMIJsonWriter.`end()`	end.
`void`	AbstractMIJsonWriter.`flush()`	flush.
`void`	MIJsonEvidenceWriter.`flush()`	flush.
`void`	MIJsonWriter.`flush()`	flush.
`void`	AbstractMIJsonWriter.`reset()`	reset.
`void`	MIJsonEvidenceWriter.`reset()`	reset.
`void`	MIJsonWriter.`reset()`	reset.
`void`	AbstractMIJsonWriter.`start()`	start.
`void`	AbstractMIJsonWriter.`write(I interaction)`	write.
`void`	AbstractMIJsonWriter.`write(Collection<? extends I> interactions)`	write.
`void`	AbstractMIJsonWriter.`write(Iterator<? extends I> interactions)`	Writes Interaction objects using iterator
`void`	MIJsonWriter.`write(Interaction interaction)`	write.

Uses of MIIOException in psidev.psi.mi.jami.tab.extension.datasource

Methods in psidev.psi.mi.jami.tab.extension.datasource that throw MIIOException
Modifier and Type	Method	Description
`void`	AbstractMitabSource.`close()`	close.
`void`	AbstractMitabStreamSource.`close()`	close.
`void`	DefaultMitabStreamSource.`close()`	close.
`protected Iterator<BinaryInteraction>`	LightMitabBinaryStreamSource.`createMitabIterator()`	createMitabIterator.
`protected Iterator<Interaction>`	LightMitabStreamSource.`createMitabIterator()`	createMitabIterator.
`protected Iterator<InteractionEvidence>`	MitabEvidenceStreamSource.`createMitabIterator()`	createMitabIterator.
`protected Iterator<ModelledBinaryInteraction>`	MitabModelledBinaryStreamSource.`createMitabIterator()`	createMitabIterator.
`protected Iterator<ModelledInteraction>`	MitabModelledStreamSource.`createMitabIterator()`	createMitabIterator.
`Collection<T>`	AbstractMitabSource.`getInteractions()`	getInteractions.
`Collection<Interaction>`	DefaultMitabSource.`getInteractions()`	getInteractions.
`Iterator<T>`	AbstractMitabSource.`getInteractionsIterator()`	getInteractionsIterator.
`Iterator<Interaction>`	DefaultMitabStreamSource.`getInteractionsIterator()`	getInteractionsIterator.
`protected void`	LightMitabBinaryStreamSource.`initialiseMitabLineParser(File file)`	initialiseMitabLineParser.
`protected void`	LightMitabBinaryStreamSource.`initialiseMitabLineParser(URL url)`	initialiseMitabLineParser.
`protected void`	MitabBinaryEvidenceStreamSource.`initialiseMitabLineParser(URL url)`	initialiseMitabLineParser.
`protected void`	AbstractMitabStreamSource.`reInit()`	reInit.
`void`	AbstractMitabSource.`reset()`	reset.
`void`	AbstractMitabStreamSource.`reset()`	reset.
`void`	DefaultMitabStreamSource.`reset()`	reset.
`boolean`	AbstractMitabSource.`validateSyntax()`	validateSyntax.
`boolean`	AbstractMitabSource.`validateSyntax(MIFileParserListener listener)`	Validate the syntax of this MIFileDataSource and uses the provided MIFileParserListener to listen to the events.
`boolean`	DefaultMitabStreamSource.`validateSyntax()`	validateSyntax.
`boolean`	DefaultMitabStreamSource.`validateSyntax(MIFileParserListener listener)`	Validate the syntax of this MIFileDataSource and uses the provided MIFileParserListener to listen to the events.

Uses of MIIOException in psidev.psi.mi.jami.tab.io.iterator

Methods in psidev.psi.mi.jami.tab.io.iterator that throw MIIOException
Modifier and Type	Method	Description
`T`	AbstractMitabIterator.`next()`	next.

Constructors in psidev.psi.mi.jami.tab.io.iterator that throw MIIOException
Constructor	Description
`AbstractMitabIterator(MitabLineParser<T,P,F> lineParser)`	Constructor for AbstractMitabIterator.
`MitabBinaryEvidenceIterator(MitabLineParser<BinaryInteractionEvidence,ParticipantEvidence,FeatureEvidence> lineParser)`	Constructor for MitabBinaryEvidenceIterator.
`MitabBinaryIterator(MitabLineParser<BinaryInteraction,Participant,Feature> lineParser)`	Constructor for MitabBinaryIterator.
`MitabInteractionEvidenceIterator(MitabLineParser<InteractionEvidence,ParticipantEvidence,FeatureEvidence> lineParser)`	Constructor for MitabInteractionEvidenceIterator.
`MitabInteractionIterator(MitabLineParser<Interaction,Participant,Feature> lineParser)`	Constructor for MitabInteractionIterator.
`MitabModelledBinaryIterator(MitabLineParser<ModelledBinaryInteraction,ModelledParticipant,ModelledFeature> lineParser)`	Constructor for MitabModelledBinaryIterator.
`MitabModelledInteractionIterator(MitabLineParser<ModelledInteraction,ModelledParticipant,ModelledFeature> lineParser)`	Constructor for MitabModelledInteractionIterator.

Uses of MIIOException in psidev.psi.mi.jami.tab.io.writer

Methods in psidev.psi.mi.jami.tab.io.writer that throw MIIOException
Modifier and Type	Method	Description
`void`	AbstractMitab25BinaryWriter.`close()`	close.
`void`	AbstractMitabWriter.`close()`	close.
`void`	DefaultMitabWriter.`close()`	close.
`void`	Mitab25BinaryWriter.`close()`	close.
`void`	Mitab25Writer.`close()`	close.
`void`	Mitab26BinaryWriter.`close()`	close.
`void`	Mitab27BinaryWriter.`close()`	close.
`void`	Mitab28BinaryWriter.`close()`	close.
`void`	AbstractMitab25BinaryWriter.`end()`	end.
`void`	AbstractMitabWriter.`end()`	end.
`void`	DefaultMitabWriter.`end()`	end.
`void`	AbstractMitab25BinaryWriter.`flush()`	flush.
`void`	AbstractMitabWriter.`flush()`	flush.
`void`	DefaultMitabWriter.`flush()`	flush.
`void`	AbstractMitab25BinaryWriter.`reset()`	reset.
`void`	AbstractMitabWriter.`reset()`	reset.
`void`	DefaultMitabWriter.`reset()`	reset.
`void`	Mitab25BinaryWriter.`reset()`	reset.
`void`	Mitab25Writer.`reset()`	reset.
`void`	Mitab26BinaryWriter.`reset()`	reset.
`void`	Mitab27BinaryWriter.`reset()`	reset.
`void`	Mitab28BinaryWriter.`reset()`	reset.
`void`	AbstractMitab25BinaryWriter.`start()`	start.
`void`	AbstractMitabWriter.`start()`	start.
`void`	DefaultMitabWriter.`start()`	start.
`void`	Mitab25BinaryWriter.`start()`	start.
`void`	Mitab25Writer.`start()`	start.
`void`	Mitab26BinaryWriter.`start()`	start.
`void`	Mitab27BinaryWriter.`start()`	start.
`void`	Mitab28BinaryWriter.`start()`	start.
`void`	AbstractMitab25BinaryWriter.`write(Collection<? extends T> interactions)`	Writes a collection of binary interactions.
`void`	AbstractMitab25BinaryWriter.`write(Iterator<? extends T> interactions)`	Writes Interaction objects using iterator
`void`	AbstractMitab25BinaryWriter.`write(T interaction)`	Writes a binary interaction.
`void`	AbstractMitabWriter.`write(Collection<? extends T> interactions)`	write.
`void`	AbstractMitabWriter.`write(Iterator<? extends T> interactions)`	Writes Interaction objects using iterator
`void`	AbstractMitabWriter.`write(T interaction)`	write.
`void`	DefaultMitabWriter.`write(Collection interactions)`	write.
`void`	DefaultMitabWriter.`write(Iterator interactions)`	Writes Interaction objects using iterator
`void`	DefaultMitabWriter.`write(Interaction interaction)`	write.
`void`	Mitab25BinaryWriter.`write(BinaryInteraction interaction)`	Writes a binary interaction.
`void`	Mitab25Writer.`write(Interaction interaction)`	write.
`void`	Mitab26BinaryWriter.`write(BinaryInteraction interaction)`	Writes a binary interaction.
`void`	Mitab27BinaryWriter.`write(BinaryInteraction interaction)`	Writes a binary interaction.
`void`	Mitab28BinaryWriter.`write(BinaryInteraction interaction)`	Writes a binary interaction.

Uses of MIIOException in psidev.psi.mi.jami.tab.io.writer.extended

Methods in psidev.psi.mi.jami.tab.io.writer.extended that throw MIIOException
Modifier and Type	Method	Description
`void`	Mitab25Writer.`close()`	close.
`void`	Mitab25Writer.`reset()`	reset.
`void`	Mitab25Writer.`start()`	start.
`void`	Mitab25Writer.`write(Interaction interaction)`	write.

Uses of MIIOException in psidev.psi.mi.jami.xml.io.iterator

Methods in psidev.psi.mi.jami.xml.io.iterator that throw MIIOException
Modifier and Type	Method	Description
`T`	AbstractXmlIterator.`next()`	next.

Constructors in psidev.psi.mi.jami.xml.io.iterator that throw MIIOException
Constructor	Description
`AbstractXmlIterator(PsiXmlParser<T> lineParser)`	Constructor for AbstractXmlIterator.
`XmlBinaryInteractionEvidenceIterator(PsiXmlParser<BinaryInteractionEvidence> lineParser)`	Constructor for XmlBinaryInteractionEvidenceIterator.
`XmlBinaryInteractionIterator(PsiXmlParser<BinaryInteraction> lineParser)`	Constructor for XmlBinaryInteractionIterator.
`XmlComplexIterator(PsiXmlParser<Complex> lineParser)`	Constructor for XmlComplexIterator.
`XmlInteractionEvidenceIterator(PsiXmlParser<InteractionEvidence> lineParser)`	Constructor for XmlInteractionEvidenceIterator.
`XmlInteractionIterator(PsiXmlParser<Interaction> lineParser)`	Constructor for XmlInteractionIterator.
`XmlModelledBinaryInteractionIterator(PsiXmlParser<ModelledBinaryInteraction> lineParser)`	Constructor for XmlModelledBinaryInteractionIterator.
`XmlModelledInteractionIterator(PsiXmlParser<ModelledInteraction> lineParser)`	Constructor for XmlModelledInteractionIterator.

Uses of MIIOException in psidev.psi.mi.jami.xml.io.parser

Methods in psidev.psi.mi.jami.xml.io.parser that throw MIIOException
Modifier and Type	Method	Description
`void`	AbstractFullPsiXmlParser.`close()`	close.
`void`	AbstractPsiXmlParser.`close()`	close.
`void`	FullPsiXmlParser.`close()`	close.
`void`	PsiXmlParser.`close()`	close.
`void`	AbstractFullPsiXmlParser.`reInit()`	reInit.
`void`	AbstractPsixmlBinaryParser.`reInit()`	reInit.
`void`	AbstractPsiXmlParser.`reInit()`	reInit.
`void`	FullPsiXmlParser.`reInit()`	reInit.
`void`	PsiXmlParser.`reInit()`	reInit.

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer

Methods in psidev.psi.mi.jami.xml.io.writer that throw MIIOException
Modifier and Type	Method	Description
`void`	AbstractXmlWriter.`close()`	close.
`void`	DefaultXmlWriter.`close()`	close.
`void`	AbstractXmlWriter.`end()`	Method to call when we reach the end
`void`	DefaultXmlWriter.`end()`	end.
`void`	AbstractXmlWriter.`flush()`	Flushes the writer (commit or write on disk)
`void`	DefaultXmlWriter.`flush()`	flush.
`void`	AbstractXmlWriter.`reset()`	reset.
`void`	DefaultXmlWriter.`reset()`	reset.
`void`	AbstractXmlWriter.`start()`	Method to call before starting to write but after initialising the context
`void`	DefaultXmlWriter.`start()`	start.
`void`	AbstractXmlWriter.`write(Collection<? extends T> interactions)`	Writes a collection of Interaction objects
`void`	AbstractXmlWriter.`write(Iterator<? extends T> interactions)`	Writes Interaction objects using iterator
`void`	AbstractXmlWriter.`write(T interaction)`	Writes an interaction
`void`	DefaultXmlWriter.`write(Collection interactions)`	write.
`void`	DefaultXmlWriter.`write(Iterator interactions)`	Writes Interaction objects using iterator
`void`	DefaultXmlWriter.`write(Interaction interaction)`	write.

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.compact

Methods in psidev.psi.mi.jami.xml.io.writer.compact that throw MIIOException
Modifier and Type	Method	Description
`void`	AbstractCompactXmlMixWriter.`close()`	close.
`void`	AbstractCompactXmlWriter.`close()`	close.
`void`	AbstractCompactXmlMixWriter.`flush()`	Flushes the writer (commit or write on disk)
`void`	AbstractCompactXmlMixWriter.`reset()`	reset.
`void`	AbstractCompactXmlWriter.`reset()`	reset.
`void`	AbstractCompactXmlMixWriter.`write(I interaction)`	Writes an interaction
`void`	AbstractCompactXmlMixWriter.`write(Collection<? extends I> interactions)`	Writes a collection of Interaction objects
`void`	AbstractCompactXmlMixWriter.`write(Iterator<? extends I> interactions)`	Writes Interaction objects using iterator

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements

Methods in psidev.psi.mi.jami.xml.io.writer.elements that throw MIIOException
Modifier and Type	Method	Description
`void`	PsiXmlCausalRelationshipWriter.`write(CausalRelationship object, Participant source)`	write.
`void`	PsiXmlElementWriter.`write(T object)`	write.
`void`	PsiXmlVariableNameWriter.`write(T object, String nodeName)`	write.
`CvTerm`	PsiXmlExperimentWriter.`writeExperiment(Experiment exp)`	writeExperiment.
`void`	PsiXmlParticipantWriter.`writeParticipant(T participant, CvTerm generalParticipantDetectionMethod)`	writeParticipant.

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements.impl

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl that throw MIIOException
Modifier and Type	Method	Description
`void`	AbstractXmlSourceWriter.`write(Source object)`	write.
`void`	XmlAliasWriter.`write(Alias object)`	write.
`void`	XmlAnnotationWriter.`write(Annotation object)`	write.
`void`	XmlAvailabilityWriter.`write(String object)`	write.
`void`	XmlChecksumWriter.`write(Checksum object)`	write.
`void`	XmlConfidenceWriter.`write(Confidence object)`	write.
`void`	XmlCvTermWriter.`write(CvTerm object, String name)`	write.
`void`	XmlDbXrefWriter.`write(Xref object, String nodeName)`	write.
`void`	XmlInferredInteractionWriter.`write(Set<Feature> object)`	write.
`void`	XmlInteractorWriter.`write(Interactor object)`	write.

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts that throw MIIOException
Modifier and Type	Method	Description
`void`	AbstractXmlExperimentalInteractorWriter.`write(AbstractExperimentalInteractor object)`	write.
`void`	AbstractXmlExperimentWriter.`write(Experiment object)`	write.
`void`	AbstractXmlFeatureWriter.`write(F object)`	write.
`void`	AbstractXmlInteractionWriter.`write(T object)`	write.
`void`	AbstractXmlOrganismWriter.`write(Organism object)`	write.
`void`	AbstractXmlParameterWriter.`write(Parameter object)`	write.
`void`	AbstractXmlParticipantWriter.`write(P object)`	write.
`void`	AbstractXmlPositionWriter.`write(Position object)`	write.
`void`	AbstractXmlPublicationWriter.`write(Publication object)`	write.
`void`	AbstractXmlRangeWriter.`write(Range object)`	write.
`CvTerm`	AbstractXmlExperimentWriter.`writeExperiment(Experiment object)`	writeExperiment.
`void`	AbstractXmlParticipantWriter.`writeParticipant(P object, CvTerm detectionMethod)`	writeParticipant.

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30 that throw MIIOException
Modifier and Type	Method	Description
`void`	AbstractXmlCooperativeEffectWriter.`write(C object)`	write.
`void`	AbstractXmlParticipantCandidateWriter.`write(P object)`	write.

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended that throw MIIOException
Modifier and Type	Method	Description
`void`	XmlInferredInteractionWriter.`write(AbstractInferredInteraction object)`	write.

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml253

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml253 that throw MIIOException
Modifier and Type	Method	Description
`void`	XmlConfidenceWriter.`write(Confidence object)`	write.

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml254

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml254 that throw MIIOException
Modifier and Type	Method	Description
`void`	XmlConfidenceWriter.`write(Confidence object)`	write.

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30 that throw MIIOException
Modifier and Type	Method	Description
`void`	XmlConfidenceWriter.`write(Confidence object)`	write.

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml25

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml25 that throw MIIOException
Modifier and Type	Method	Description
`protected void`	XmlPublicationWriter.`writeBibrefContent(Publication object)`	writeBibrefContent.

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30 that throw MIIOException
Modifier and Type	Method	Description
`void`	XmlBindingFeaturesWriter.`write(Set<Feature> object)`	write.
`void`	XmlCausalRelationshipWriter.`write(CausalRelationship object, Participant source)`	write.
`void`	XmlCooperativityEvidenceWriter.`write(CooperativityEvidence object)`	write.
`void`	XmlModelledConfidenceWriter.`write(Confidence object)`	write.
`void`	XmlResultingSequenceWriter.`write(ResultingSequence object)`	write.
`void`	XmlStoichiometryWriter.`write(Stoichiometry object)`	write.
`void`	XmlVariableParameterValueSetWriter.`write(VariableParameterValueSet object)`	write.
`void`	XmlVariableParameterValueWriter.`write(VariableParameterValue object)`	write.
`void`	XmlVariableParameterWriter.`write(VariableParameter object)`	write.
`protected void`	XmlPublicationWriter.`writeBibrefContent(Publication object)`	writeBibrefContent.

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.expanded

Methods in psidev.psi.mi.jami.xml.io.writer.expanded that throw MIIOException
Modifier and Type	Method	Description
`void`	AbstractExpandedXmlMixWriter.`close()`	close.
`void`	AbstractExpandedXmlMixWriter.`flush()`	Flushes the writer (commit or write on disk)
`void`	AbstractExpandedXmlMixWriter.`reset()`	reset.
`void`	AbstractExpandedXmlMixWriter.`write(I interaction)`	Writes an interaction
`void`	AbstractExpandedXmlMixWriter.`write(Collection<? extends I> interactions)`	Writes a collection of Interaction objects
`void`	AbstractExpandedXmlMixWriter.`write(Iterator<? extends I> interactions)`	Writes Interaction objects using iterator

Uses of MIIOException in psidev.psi.mi.jami.xml.model.extension.datasource

Methods in psidev.psi.mi.jami.xml.model.extension.datasource that throw MIIOException
Modifier and Type	Method	Description
`void`	AbstractPsiXmlSource.`close()`	This method close the file data source and all opened streams and readers
`void`	AbstractPsiXmlStream.`close()`	This method close the file data source and all opened streams and readers
`void`	DefaultPsiXmlStreamSource.`close()`	close.
`Collection<T>`	AbstractPsiXmlSource.`getInteractions()`	The collection of Interactions for this datasource
`Collection<Interaction>`	DefaultPsiXmlSource.`getInteractions()`	getInteractions.
`Iterator<T>`	AbstractPsiXmlSource.`getInteractionsIterator()`	The iterator of Interactions for this datasource
`Iterator<T>`	AbstractPsiXmlStream.`getInteractionsIterator()`	The iterator of Interactions for this datasource
`Iterator<Interaction>`	DefaultPsiXmlStreamSource.`getInteractionsIterator()`	getInteractionsIterator.
`Iterator<Complex>`	XmlComplexStreamSource.`getInteractorsIterator()`	The interactors iterator for this datasource.
`protected void`	AbstractPsiXmlStream.`reInit()`	reInit.
`void`	AbstractPsiXmlSource.`reset()`	This method will reset the data sources from all loaded options.
`void`	AbstractPsiXmlStream.`reset()`	This method will reset the data sources from all loaded options.
`void`	DefaultPsiXmlStreamSource.`reset()`	reset.
`boolean`	AbstractPsiXmlStream.`validateSyntax()`	Validate the syntax of this MIFileDataSource.
`boolean`	AbstractPsiXmlStream.`validateSyntax(MIFileParserListener listener)`	Validate the syntax of this MIFileDataSource and uses the provided MIFileParserListener to listen to the events.
`boolean`	DefaultPsiXmlStreamSource.`validateSyntax()`	validateSyntax.
`boolean`	DefaultPsiXmlStreamSource.`validateSyntax(MIFileParserListener listener)`	Validate the syntax of this MIFileDataSource and uses the provided MIFileParserListener to listen to the events.

Uses of Classpsidev.psi.mi.jami.exception.MIIOException

Uses of MIIOException in psidev.psi.mi.jami.crosslink.extension.datasource

Uses of MIIOException in psidev.psi.mi.jami.crosslink.io.iterator

Uses of MIIOException in psidev.psi.mi.jami.datasource

Uses of MIIOException in psidev.psi.mi.jami.html

Uses of MIIOException in psidev.psi.mi.jami.json.binary

Uses of MIIOException in psidev.psi.mi.jami.json.nary

Uses of MIIOException in psidev.psi.mi.jami.tab.extension.datasource

Uses of MIIOException in psidev.psi.mi.jami.tab.io.iterator

Uses of MIIOException in psidev.psi.mi.jami.tab.io.writer

Uses of MIIOException in psidev.psi.mi.jami.tab.io.writer.extended

Uses of MIIOException in psidev.psi.mi.jami.xml.io.iterator

Uses of MIIOException in psidev.psi.mi.jami.xml.io.parser

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.compact

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements.impl

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml253

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml254

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml25

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30

Uses of MIIOException in psidev.psi.mi.jami.xml.io.writer.expanded

Uses of MIIOException in psidev.psi.mi.jami.xml.model.extension.datasource

Uses of Class
psidev.psi.mi.jami.exception.MIIOException