Uses of Interface
psidev.psi.mi.jami.binary.BinaryInteractionEvidence

Packages that use BinaryInteractionEvidence

Package	Description
psidev.psi.mi.jami.binary.expansion
psidev.psi.mi.jami.binary.impl
psidev.psi.mi.jami.crosslink.extension
psidev.psi.mi.jami.crosslink.extension.datasource
psidev.psi.mi.jami.crosslink.io.parser
psidev.psi.mi.jami.factory
psidev.psi.mi.jami.json.binary
psidev.psi.mi.jami.json.binary.elements
psidev.psi.mi.jami.tab.extension
psidev.psi.mi.jami.tab.extension.datasource
psidev.psi.mi.jami.tab.io.iterator
psidev.psi.mi.jami.tab.io.parser
psidev.psi.mi.jami.tab.io.writer
psidev.psi.mi.jami.tab.io.writer.extended
psidev.psi.mi.jami.tab.io.writer.feeder
psidev.psi.mi.jami.utils
psidev.psi.mi.jami.utils.clone
psidev.psi.mi.jami.xml.io.iterator
psidev.psi.mi.jami.xml.io.parser
psidev.psi.mi.jami.xml.io.writer.compact
psidev.psi.mi.jami.xml.io.writer.compact.extended
psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml30
psidev.psi.mi.jami.xml.model.extension.binary
psidev.psi.mi.jami.xml.model.extension.binary.xml253
psidev.psi.mi.jami.xml.model.extension.binary.xml254
psidev.psi.mi.jami.xml.model.extension.binary.xml30
psidev.psi.mi.jami.xml.model.extension.datasource
psidev.psi.mi.jami.xml.model.extension.factory.xml25
psidev.psi.mi.jami.xml.model.extension.factory.xml30

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.binary.expansion

Methods in psidev.psi.mi.jami.binary.expansion that return BinaryInteractionEvidence

Modifier and Type	Method	Description
protected <P extends Participant> BinaryInteractionEvidence	InteractionEvidenceBipartiteExpansion.createBinaryInteraction(InteractionEvidence interaction, P c1, P c2)	createBinaryInteraction
protected <P extends Participant> BinaryInteractionEvidence	InteractionEvidenceMatrixExpansion.createBinaryInteraction(InteractionEvidence interaction, P c1, P c2)	createBinaryInteraction
protected <P extends Participant> BinaryInteractionEvidence	InteractionEvidenceSpokeExpansion.createBinaryInteraction(InteractionEvidence interaction, P c1, P c2)	createBinaryInteraction

Methods in psidev.psi.mi.jami.binary.expansion that return types with arguments of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected Collection<BinaryInteractionEvidence>	InteractionEvidenceBipartiteExpansion.collectBinaryInteractionsFromNary(InteractionEvidence interaction)	collectBinaryInteractionsFromNary
protected Collection<BinaryInteractionEvidence>	InteractionEvidenceBipartiteExpansion.createBinaryInteractionWrappersFrom(InteractionEvidence interaction)	createBinaryInteractionWrappersFrom
protected Collection<BinaryInteractionEvidence>	InteractionEvidenceMatrixExpansion.createBinaryInteractionWrappersFrom(InteractionEvidence interaction)	createBinaryInteractionWrappersFrom
protected Collection<BinaryInteractionEvidence>	InteractionEvidenceSpokeExpansion.createBinaryInteractionWrappersFrom(InteractionEvidence interaction)	createBinaryInteractionWrappersFrom
protected Collection<BinaryInteractionEvidence>	InteractionEvidenceBipartiteExpansion.createNewSelfBinaryInteractionsFrom(InteractionEvidence interaction)	createNewSelfBinaryInteractionsFrom
protected Collection<BinaryInteractionEvidence>	InteractionEvidenceMatrixExpansion.createNewSelfBinaryInteractionsFrom(InteractionEvidence interaction)	createNewSelfBinaryInteractionsFrom
protected Collection<BinaryInteractionEvidence>	InteractionEvidenceSpokeExpansion.createNewSelfBinaryInteractionsFrom(InteractionEvidence interaction)	createNewSelfBinaryInteractionsFrom

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.binary.impl

Classes in psidev.psi.mi.jami.binary.impl that implement BinaryInteractionEvidence

Modifier and Type	Class	Description
class	BinaryInteractionEvidenceWrapper	A wrapper for InteractionEvidence which contains two participants
class	DefaultBinaryInteractionEvidence	Default implementation for BinaryInteractionEvidence
class	DefaultNamedBinaryInteractionEvidence	Default implementation of a Named binary interaction evidence

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.crosslink.extension

Classes in psidev.psi.mi.jami.crosslink.extension that implement BinaryInteractionEvidence

Modifier and Type	Class	Description
class	CsvBinaryInteractionEvidence	Crosslink CSV implementation of BinaryInteractionEvidence

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.crosslink.extension.datasource

Methods in psidev.psi.mi.jami.crosslink.extension.datasource that return types with arguments of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected AbstractCsvInteractionEvidenceParser<BinaryInteractionEvidence>	CsvBinaryEvidenceSource.instantiateLineParser()	instantiateLineParser.
protected AbstractCsvInteractionEvidenceParser<BinaryInteractionEvidence>	CsvBinaryEvidenceStreamSource.instantiateLineParser()	instantiateLineParser.

Methods in psidev.psi.mi.jami.crosslink.extension.datasource with parameters of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected void	CsvMixedEvidenceSource.processBinaryInteraction(BinaryInteractionEvidence binary)	processBinaryInteraction.
protected void	CsvNaryEvidenceSource.processBinaryInteraction(BinaryInteractionEvidence binary)	processBinaryInteraction.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.crosslink.io.parser

Methods in psidev.psi.mi.jami.crosslink.io.parser that return BinaryInteractionEvidence

Modifier and Type	Method	Description
protected BinaryInteractionEvidence	CsvBinaryInteractionEvidenceParser.instantiateInteractionEvidence(int linePosition, String bait)	instantiateInteractionEvidence.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.factory

Methods in psidev.psi.mi.jami.factory that return BinaryInteractionEvidence

Modifier and Type	Method	Description
BinaryInteractionEvidence	BinaryInteractionFactory.createBinaryInteractionEvidenceFrom(InteractionEvidence interaction, ParticipantEvidence p1, ParticipantEvidence p2, CvTerm expansionMethod)	Create a new BinaryInteractionEvidence object from an InteractionEvidence parent and two participants evidences
BinaryInteractionEvidence	DefaultBinaryInteractionFactory.createBinaryInteractionEvidenceFrom(InteractionEvidence interaction, ParticipantEvidence p1, ParticipantEvidence p2, CvTerm expansionMethod)	Create a new BinaryInteractionEvidence object from an InteractionEvidence parent and two participants evidences
BinaryInteractionEvidence	BinaryInteractionFactory.createBinaryInteractionEvidenceWrapperFrom(InteractionEvidence interaction)	Creates a BinaryInteractionEvidence that wraps the given interaction
BinaryInteractionEvidence	DefaultBinaryInteractionFactory.createBinaryInteractionEvidenceWrapperFrom(InteractionEvidence interaction)	Creates a BinaryInteractionEvidence that wraps the given interaction
BinaryInteractionEvidence	BinaryInteractionFactory.createSelfBinaryInteractionEvidenceFrom(InteractionEvidence interaction)	Creates a BinaryInteractionEvidence representing a self interaction
BinaryInteractionEvidence	DefaultBinaryInteractionFactory.createSelfBinaryInteractionEvidenceFrom(InteractionEvidence interaction)	Creates a BinaryInteractionEvidence representing a self interaction
BinaryInteractionEvidence	BinaryInteractionFactory.instantiateNewBinaryInteractionEvidence()	Instantiate a new BinaryInteraction evidence
BinaryInteractionEvidence	DefaultBinaryInteractionFactory.instantiateNewBinaryInteractionEvidence()	instantiateNewBinaryInteractionEvidence

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.json.binary

Constructor parameters in psidev.psi.mi.jami.json.binary with type arguments of type BinaryInteractionEvidence

Constructor	Description
MIJsonEvidenceWriter(File file, OntologyTermFetcher fetcher, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for MIJsonEvidenceWriter.
MIJsonEvidenceWriter(OutputStream output, OntologyTermFetcher fetcher, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for MIJsonEvidenceWriter.
MIJsonEvidenceWriter(Writer writer, OntologyTermFetcher fetcher, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for MIJsonEvidenceWriter.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.json.binary.elements

Methods in psidev.psi.mi.jami.json.binary.elements with parameters of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected String[]	SimpleJsonBinaryInteractionEvidenceWriter.generateInteractionIdentifier(BinaryInteractionEvidence object, Xref preferredIdentifier)	generateInteractionIdentifier.
void	SimpleJsonBinaryInteractionEvidenceWriter.write(BinaryInteractionEvidence object)	write.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.tab.extension

Classes in psidev.psi.mi.jami.tab.extension that implement BinaryInteractionEvidence

Modifier and Type	Class	Description
class	MitabBinaryInteractionEvidence	TODO comment this

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.tab.extension.datasource

Methods in psidev.psi.mi.jami.tab.extension.datasource that return types with arguments of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected Iterator<BinaryInteractionEvidence>	MitabBinaryEvidenceStreamSource.createMitabIterator()	createMitabIterator.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.tab.io.iterator

Constructor parameters in psidev.psi.mi.jami.tab.io.iterator with type arguments of type BinaryInteractionEvidence

Constructor	Description
MitabBinaryEvidenceIterator(MitabLineParser<BinaryInteractionEvidence,ParticipantEvidence,FeatureEvidence> lineParser)	Constructor for MitabBinaryEvidenceIterator.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.tab.io.parser

Methods in psidev.psi.mi.jami.tab.io.parser with parameters of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected void	BinaryEvidenceLineParser.initialiseExpansionMethod(Collection<MitabCvTerm> expansion, BinaryInteractionEvidence interaction)	initialiseExpansionMethod.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.tab.io.writer

Method parameters in psidev.psi.mi.jami.tab.io.writer with type arguments of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected void	Mitab25EvidenceWriter.initialiseExpansionMethod(ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	initialiseExpansionMethod.
protected void	Mitab25BinaryWriter.setBinaryEvidenceWriter(AbstractMitab25BinaryWriter<BinaryInteractionEvidence,ParticipantEvidence> binaryEvidenceWriter)	Setter for the field binaryEvidenceWriter.
protected void	Mitab26BinaryWriter.setBinaryEvidenceWriter(AbstractMitab26BinaryWriter<BinaryInteractionEvidence,ParticipantEvidence> binaryEvidenceWriter)	Setter for the field binaryEvidenceWriter.
protected void	Mitab27BinaryWriter.setBinaryEvidenceWriter(AbstractMitab27BinaryWriter<BinaryInteractionEvidence,ParticipantEvidence> binaryEvidenceWriter)	Setter for the field binaryEvidenceWriter.
protected void	Mitab28BinaryWriter.setBinaryEvidenceWriter(AbstractMitab28BinaryWriter<BinaryInteractionEvidence,ParticipantEvidence> binaryEvidenceWriter)	Setter for the field binaryEvidenceWriter.

Constructor parameters in psidev.psi.mi.jami.tab.io.writer with type arguments of type BinaryInteractionEvidence

Constructor	Description
Mitab25EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab25EvidenceWriter.
Mitab25EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab25EvidenceWriter.
Mitab25EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab25EvidenceWriter.
Mitab26EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab26EvidenceWriter.
Mitab26EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab26EvidenceWriter.
Mitab26EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab26EvidenceWriter.
Mitab27EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab27EvidenceWriter.
Mitab27EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab27EvidenceWriter.
Mitab27EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab27EvidenceWriter.
Mitab28EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab28EvidenceWriter.
Mitab28EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab28EvidenceWriter.
Mitab28EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab28EvidenceWriter.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.tab.io.writer.extended

Method parameters in psidev.psi.mi.jami.tab.io.writer.extended with type arguments of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected void	Mitab25EvidenceWriter.initialiseExpansionMethod(ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	initialiseExpansionMethod.

Constructor parameters in psidev.psi.mi.jami.tab.io.writer.extended with type arguments of type BinaryInteractionEvidence

Constructor	Description
Mitab25EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab25EvidenceWriter.
Mitab25EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab25EvidenceWriter.
Mitab25EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab25EvidenceWriter.
Mitab26EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab26EvidenceWriter.
Mitab26EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab26EvidenceWriter.
Mitab26EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab26EvidenceWriter.
Mitab27EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab27EvidenceWriter.
Mitab27EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab27EvidenceWriter.
Mitab27EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab27EvidenceWriter.
Mitab28EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab28EvidenceWriter.
Mitab28EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab28EvidenceWriter.
Mitab28EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab28EvidenceWriter.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.tab.io.writer.feeder

Methods in psidev.psi.mi.jami.tab.io.writer.feeder with parameters of type BinaryInteractionEvidence

Modifier and Type	Method	Description
void	MitabInteractionEvidenceFeeder.writeFirstAuthor(BinaryInteractionEvidence interaction)	writeFirstAuthor.
void	MitabInteractionEvidenceFeeder.writeHostOrganism(BinaryInteractionEvidence interaction)	writeHostOrganism.
void	MitabInteractionEvidenceFeeder.writeInteractionAnnotations(BinaryInteractionEvidence interaction)	writeInteractionAnnotations.
void	MitabInteractionEvidenceFeeder.writeInteractionConfidences(BinaryInteractionEvidence interaction)	writeInteractionConfidences.
void	MitabInteractionEvidenceFeeder.writeInteractionDetectionMethod(BinaryInteractionEvidence interaction)	writeInteractionDetectionMethod.
void	MitabInteractionEvidenceFeeder.writeInteractionIdentifiers(BinaryInteractionEvidence interaction)	writeInteractionIdentifiers.
void	MitabInteractionEvidenceFeeder.writeInteractionParameters(BinaryInteractionEvidence interaction)	writeInteractionParameters.
void	MitabInteractionEvidenceFeeder.writeInteractionXrefs(BinaryInteractionEvidence interaction)	writeInteractionXrefs.
void	MitabInteractionEvidenceFeeder.writeNegativeProperty(BinaryInteractionEvidence interaction)	writeNegativeProperty.
void	MitabInteractionEvidenceFeeder.writePublicationIdentifiers(BinaryInteractionEvidence interaction)	writePublicationIdentifiers.
void	MitabInteractionEvidenceFeeder.writeSource(BinaryInteractionEvidence interaction)	writeSource.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.utils

Methods in psidev.psi.mi.jami.utils that return BinaryInteractionEvidence

Modifier and Type	Method	Description
static BinaryInteractionEvidence	InteractionUtils.createAndAddNewSelfBinaryInteractionEvidence(InteractionEvidence interaction)	Creates a new BinaryInteractionEvidence from the given interactionEvidence which should only contain one participant with a stoichiometry >= 2 or participant stoichiometry null and participant is not self/putative self.
static BinaryInteractionEvidence	InteractionUtils.createBinaryInteractionEvidenceFrom(InteractionEvidence interaction)	Create a BinaryInteractionEvidenceWrapper from the given interaction evidence which should contain not more than two participants

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.utils.clone

Methods in psidev.psi.mi.jami.utils.clone with parameters of type BinaryInteractionEvidence

Modifier and Type	Method	Description
static void	InteractionCloner.copyAndOverrideParticipantsEvidencesToBinary(InteractionEvidence source, BinaryInteractionEvidence target, boolean createNewParticipant, boolean self)	This method will copy participants of interaction evidence source in binary target.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.io.iterator

Constructor parameters in psidev.psi.mi.jami.xml.io.iterator with type arguments of type BinaryInteractionEvidence

Constructor	Description
XmlBinaryInteractionEvidenceIterator(PsiXmlParser<BinaryInteractionEvidence> lineParser)	Constructor for XmlBinaryInteractionEvidenceIterator.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.io.parser

Methods in psidev.psi.mi.jami.xml.io.parser that return types with arguments of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence>	FullXmlBinaryEvidenceParser.initialiseDefaultExpansionMethod()	initialiseDefaultExpansionMethod.
protected ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence>	XmlBinaryEvidenceParser.initialiseDefaultExpansionMethod()	initialiseDefaultExpansionMethod.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.io.writer.compact

Methods in psidev.psi.mi.jami.xml.io.writer.compact with parameters of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected void	CompactXmlBinaryEvidenceWriter.registerAvailabilities(BinaryInteractionEvidence interaction)	registerAvailabilities.
protected void	CompactXmlNamedBinaryEvidenceWriter.registerAvailabilities(BinaryInteractionEvidence interaction)	registerAvailabilities.
protected void	CompactXmlBinaryEvidenceWriter.registerExperiment(BinaryInteractionEvidence interaction)	registerExperiment.
protected void	CompactXmlNamedBinaryEvidenceWriter.registerExperiment(BinaryInteractionEvidence interaction)	registerExperiment.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.io.writer.compact.extended

Methods in psidev.psi.mi.jami.xml.io.writer.compact.extended with parameters of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected void	CompactXmlBinaryEvidenceWriter.registerAvailabilities(BinaryInteractionEvidence interaction)	registerAvailabilities.
protected void	CompactXmlBinaryEvidenceWriter.registerExperiment(BinaryInteractionEvidence interaction)	registerExperiment.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25 with parameters of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected void	XmlBinaryInteractionEvidenceWriter.writeAttributes(BinaryInteractionEvidence object)	writeAttributes.
protected void	XmlBinaryInteractionEvidenceWriter.writeAvailability(BinaryInteractionEvidence object)	writeAvailability.
protected CvTerm	XmlBinaryInteractionEvidenceWriter.writeExperiments(BinaryInteractionEvidence object)	writeExperiments.
protected void	XmlNamedBinaryInteractionEvidenceWriter.writeNames(BinaryInteractionEvidence object)	writeNames.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30 with parameters of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected void	XmlBinaryInteractionEvidenceWriter.writeAttributes(BinaryInteractionEvidence object)	writeAttributes.
protected void	XmlBinaryInteractionEvidenceWriter.writeAvailability(BinaryInteractionEvidence object)	writeAvailability.
protected CvTerm	XmlBinaryInteractionEvidenceWriter.writeExperiments(BinaryInteractionEvidence object)	writeExperiments.
protected void	XmlNamedBinaryInteractionEvidenceWriter.writeNames(BinaryInteractionEvidence object)	writeNames.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25 with parameters of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected void	XmlBinaryInteractionEvidenceWriter.writeAttributes(BinaryInteractionEvidence object)	writeAttributes.
protected void	XmlBinaryInteractionEvidenceWriter.writeAvailability(BinaryInteractionEvidence object)	writeAvailability.
protected CvTerm	XmlBinaryInteractionEvidenceWriter.writeExperiments(BinaryInteractionEvidence object)	writeExperiments.
protected void	XmlNamedBinaryInteractionEvidenceWriter.writeNames(BinaryInteractionEvidence object)	writeNames.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml30 with parameters of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected void	XmlBinaryInteractionEvidenceWriter.writeAttributes(BinaryInteractionEvidence object)	writeAttributes.
protected void	XmlBinaryInteractionEvidenceWriter.writeAvailability(BinaryInteractionEvidence object)	writeAvailability.
protected CvTerm	XmlBinaryInteractionEvidenceWriter.writeExperiments(BinaryInteractionEvidence object)	writeExperiments.
protected void	XmlNamedBinaryInteractionEvidenceWriter.writeNames(BinaryInteractionEvidence object)	writeNames.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml25

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml25 with parameters of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected void	XmlBinaryInteractionEvidenceWriter.writeAttributes(BinaryInteractionEvidence object)	writeAttributes.
protected void	XmlBinaryInteractionEvidenceWriter.writeAvailability(BinaryInteractionEvidence object)	writeAvailability.
protected CvTerm	XmlBinaryInteractionEvidenceWriter.writeExperiments(BinaryInteractionEvidence object)	writeExperiments.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml30 with parameters of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected void	XmlBinaryInteractionEvidenceWriter.writeAttributes(BinaryInteractionEvidence object)	writeAttributes.
protected void	XmlBinaryInteractionEvidenceWriter.writeAvailability(BinaryInteractionEvidence object)	writeAvailability.
protected CvTerm	XmlBinaryInteractionEvidenceWriter.writeExperiments(BinaryInteractionEvidence object)	writeExperiments.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml25

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml25 with parameters of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected void	XmlBinaryInteractionEvidenceWriter.writeAttributes(BinaryInteractionEvidence object)	writeAttributes.
protected void	XmlBinaryInteractionEvidenceWriter.writeAvailability(BinaryInteractionEvidence object)	writeAvailability.
protected CvTerm	XmlBinaryInteractionEvidenceWriter.writeExperiments(BinaryInteractionEvidence object)	writeExperiments.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml30 with parameters of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected void	XmlBinaryInteractionEvidenceWriter.writeAttributes(BinaryInteractionEvidence object)	writeAttributes.
protected void	XmlBinaryInteractionEvidenceWriter.writeAvailability(BinaryInteractionEvidence object)	writeAvailability.
protected CvTerm	XmlBinaryInteractionEvidenceWriter.writeExperiments(BinaryInteractionEvidence object)	writeExperiments.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.model.extension.binary

Classes in psidev.psi.mi.jami.xml.model.extension.binary that implement BinaryInteractionEvidence

Modifier and Type	Class	Description
class	AbstractXmlBinaryInteractionEvidence	Abstract class for Xml BinaryInteractionEvidence
class	XmlBinaryInteractionEvidenceWrapper	Xml implementation of BinaryInteractionWrapper with a source locator

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.model.extension.binary.xml253

Classes in psidev.psi.mi.jami.xml.model.extension.binary.xml253 that implement BinaryInteractionEvidence

Modifier and Type	Class	Description
class	XmlBinaryInteractionEvidence	Xml implementation of BinaryInteractionEvidence

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.model.extension.binary.xml254

Classes in psidev.psi.mi.jami.xml.model.extension.binary.xml254 that implement BinaryInteractionEvidence

Modifier and Type	Class	Description
class	XmlBinaryInteractionEvidence	Xml implementation of BinaryInteractionEvidence

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.model.extension.binary.xml30

Classes in psidev.psi.mi.jami.xml.model.extension.binary.xml30 that implement BinaryInteractionEvidence

Modifier and Type	Class	Description
class	XmlBinaryInteractionEvidence	Xml implementation of BinaryInteractionEvidence
class	XmlBinaryInteractionEvidenceWrapper	Xml implementation of BinaryInteractionWrapper with a source locator

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.model.extension.datasource

Methods in psidev.psi.mi.jami.xml.model.extension.datasource that return types with arguments of type BinaryInteractionEvidence

Modifier and Type	Method	Description
protected Iterator<BinaryInteractionEvidence>	XmlBinaryEvidenceStreamSource.createXmlIterator()	createXmlIterator.

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.model.extension.factory.xml25

Methods in psidev.psi.mi.jami.xml.model.extension.factory.xml25 that return BinaryInteractionEvidence

Modifier and Type	Method	Description
BinaryInteractionEvidence	XmlBinaryInteractionFactory.createBinaryInteractionEvidenceFrom(InteractionEvidence interaction, ParticipantEvidence p1, ParticipantEvidence p2, CvTerm expansionMethod)	Create a new BinaryInteractionEvidence object from an InteractionEvidence parent and two participants evidences
BinaryInteractionEvidence	XmlBinaryInteractionFactory.createBinaryInteractionEvidenceWrapperFrom(InteractionEvidence interaction)	Creates a BinaryInteractionEvidence that wraps the given interaction
BinaryInteractionEvidence	XmlBinaryInteractionFactory.createSelfBinaryInteractionEvidenceFrom(InteractionEvidence interaction)	Creates a BinaryInteractionEvidence representing a self interaction

Uses of BinaryInteractionEvidence in psidev.psi.mi.jami.xml.model.extension.factory.xml30

Methods in psidev.psi.mi.jami.xml.model.extension.factory.xml30 that return BinaryInteractionEvidence

Modifier and Type	Method	Description
BinaryInteractionEvidence	XmlBinaryInteractionFactory.createBinaryInteractionEvidenceFrom(InteractionEvidence interaction, ParticipantEvidence p1, ParticipantEvidence p2, CvTerm expansionMethod)	Create a new BinaryInteractionEvidence object from an InteractionEvidence parent and two participants evidences
BinaryInteractionEvidence	XmlBinaryInteractionFactory.createBinaryInteractionEvidenceWrapperFrom(InteractionEvidence interaction)	Creates a BinaryInteractionEvidence that wraps the given interaction
BinaryInteractionEvidence	XmlBinaryInteractionFactory.createSelfBinaryInteractionEvidenceFrom(InteractionEvidence interaction)	Creates a BinaryInteractionEvidence representing a self interaction