Uses of Interface
psidev.psi.mi.jami.binary.expansion.ComplexExpansionMethod

Packages that use ComplexExpansionMethod

Package	Description
psidev.psi.mi.jami.binary.expansion
psidev.psi.mi.jami.commons
psidev.psi.mi.jami.factory
psidev.psi.mi.jami.json
psidev.psi.mi.jami.json.binary
psidev.psi.mi.jami.tab.io.writer
psidev.psi.mi.jami.tab.io.writer.extended
psidev.psi.mi.jami.xml.io.parser
psidev.psi.mi.jami.xml.model.extension.datasource

Uses of ComplexExpansionMethod in psidev.psi.mi.jami.binary.expansion

Classes in psidev.psi.mi.jami.binary.expansion that implement ComplexExpansionMethod

Modifier and Type	Class	Description
class	AbstractBipartiteExpansion<T extends Interaction,B extends BinaryInteraction>	Abstract class for BipartiteExpansion.
class	AbstractComplexExpansionMethod<T extends Interaction,B extends BinaryInteraction>	Abstract class for ComplexExpansionMethod.
class	AbstractMatrixExpansion<T extends Interaction,B extends BinaryInteraction>	Abstract class for Matrix expansion
class	AbstractSpokeExpansion<T extends Interaction,B extends BinaryInteraction>	Abstract class for SpokeExpansion
class	BipartiteExpansion	The bipartite expansion.
class	InteractionEvidenceBipartiteExpansion	BipartiteExpansion for InteractionEvidence
class	InteractionEvidenceMatrixExpansion	Matrix expansion for InteractionEvidence
class	InteractionEvidenceSpokeExpansion	Spoke expansion for interaction evidence
class	MatrixExpansion	The matrix Expansion method.
class	ModelledInteractionBipartiteExpansion	Bipartite expansion for ModelledInteraction
class	ModelledInteractionMatrixExpansion	Matrix expansion for ModelledInteraction
class	ModelledInteractionSpokeExpansion	Spoke expansion for ModelledInteraction
class	SpokeExpansion	The spoke expansion Complex n-ary data has been expanded to binary using the spoke model.

Uses of ComplexExpansionMethod in psidev.psi.mi.jami.commons

Methods in psidev.psi.mi.jami.commons with parameters of type ComplexExpansionMethod

Modifier and Type	Method	Description
Map<String,Object>	MIWriterOptionFactory.getMitabOptions(Object output, InteractionCategory objectCategory, ComplexType complexType, ComplexExpansionMethod expansion, boolean writeHeader, MitabVersion version, boolean extended)	Create the options for the MITAB InteractionWriter.
Map<String,Object>	MIDataSourceOptionFactory.getXmlOptions(InteractionCategory objectCategory, ComplexType complexType, boolean streaming, MIFileParserListener listener, Object input, ComplexExpansionMethod expansionMethod, PsiXmlIdCache objectCache)	Create the options for the PSI-XML datasource.

Uses of ComplexExpansionMethod in psidev.psi.mi.jami.factory

Methods in psidev.psi.mi.jami.factory that return ComplexExpansionMethod

Modifier and Type	Method	Description
ComplexExpansionMethod	ComplexExpansionFactory.createBipartiteComplexExpansion(InteractionCategory category)	Create an instance of bipartite complex expansion that suits the interactionCategory
ComplexExpansionMethod	DefaultComplexExpansionFactory.createBipartiteComplexExpansion(InteractionCategory category)	Create an instance of bipartite complex expansion that suits the interactionCategory
ComplexExpansionMethod	ComplexExpansionFactory.createComplexExpansionMethod(InteractionCategory category, ComplexExpansionType type)	Create an instance of complex expansion that suits the interactionCategory and the ComplexExpansionType
ComplexExpansionMethod	DefaultComplexExpansionFactory.createComplexExpansionMethod(InteractionCategory category, ComplexExpansionType type)	Create an instance of complex expansion that suits the interactionCategory and the ComplexExpansionType
ComplexExpansionMethod<Interaction,BinaryInteraction>	ComplexExpansionFactory.createDefaultComplexExpansion(ComplexExpansionType type)	Create an instance of complex expansion that suits the ComplexExpansionType and can deal with any kind of interactions (modelled, evidence)
ComplexExpansionMethod<Interaction,BinaryInteraction>	DefaultComplexExpansionFactory.createDefaultComplexExpansion(ComplexExpansionType type)	Create an instance of complex expansion that suits the ComplexExpansionType and can deal with any kind of interactions (modelled, evidence)
ComplexExpansionMethod	ComplexExpansionFactory.createMatrixComplexExpansion(InteractionCategory category)	Create an instance of matrix complex expansion that suits the interactionCategory
ComplexExpansionMethod	DefaultComplexExpansionFactory.createMatrixComplexExpansion(InteractionCategory category)	Create an instance of matrix complex expansion that suits the interactionCategory
ComplexExpansionMethod	ComplexExpansionFactory.createSpokeComplexExpansion(InteractionCategory category)	Create an instance of spoke complex expansion that suits the interactionCategory
ComplexExpansionMethod	DefaultComplexExpansionFactory.createSpokeComplexExpansion(InteractionCategory category)	Create an instance of spoke complex expansion that suits the interactionCategory

Uses of ComplexExpansionMethod in psidev.psi.mi.jami.json

Methods in psidev.psi.mi.jami.json with parameters of type ComplexExpansionMethod

Modifier and Type	Method	Description
Map<String,Object>	MIJsonOptionFactory.getJsonOptions(Object output, InteractionCategory objectCategory, ComplexType complexType, MIJsonType type, OntologyTermFetcher ontologyFetcher, ComplexExpansionMethod complexExpansion)	Create the options for the JSON InteractionWriter.
Map<String,Object>	MIJsonOptionFactory.getJsonOptions(InteractionCategory objectCategory, ComplexExpansionMethod expansion, File writer)	Create the options for a JSON interaction writer which will be by default of type MIJsonType.binary_only as a complex ecpasnion is provided.
Map<String,Object>	MIJsonOptionFactory.getJsonOptions(InteractionCategory objectCategory, ComplexExpansionMethod expansion, OutputStream writer)	Create the options for a JSON interaction writer which will be by default of type MIJsonType.binary_only as a complex ecpasnion is provided.
Map<String,Object>	MIJsonOptionFactory.getJsonOptions(InteractionCategory objectCategory, ComplexExpansionMethod expansion, Writer writer)	Create the options for a JSON interaction writer which will be by default of type MIJsonType.binary_only as a complex ecpasnion is provided.
Map<String,Object>	MIJsonOptionFactory.getJsonOptions(InteractionCategory objectCategory, ComplexExpansionMethod expansion, OntologyTermFetcher fetcher, File writer)	Create the options for a JSON interaction writer which will be by default of type MIJsonType.binary_only as a complex ecpasnion is provided.
Map<String,Object>	MIJsonOptionFactory.getJsonOptions(InteractionCategory objectCategory, ComplexExpansionMethod expansion, OntologyTermFetcher fetcher, OutputStream writer)	Create the options for a JSON interaction writer which will be by default of type MIJsonType.binary_only as a complex ecpasnion is provided.
Map<String,Object>	MIJsonOptionFactory.getJsonOptions(InteractionCategory objectCategory, ComplexExpansionMethod expansion, OntologyTermFetcher fetcher, Writer writer)	Create the options for a JSON interaction writer which will be by default of type MIJsonType.binary_only as a complex ecpasnion is provided.

Uses of ComplexExpansionMethod in psidev.psi.mi.jami.json.binary

Methods in psidev.psi.mi.jami.json.binary with parameters of type ComplexExpansionMethod

Modifier and Type	Method	Description
protected void	AbstractMIJsonWriter.setExpansionMethod(ComplexExpansionMethod<I,B> expansionMethod)	Setter for the field expansionMethod.

Constructors in psidev.psi.mi.jami.json.binary with parameters of type ComplexExpansionMethod

Constructor	Description
AbstractMIJsonWriter(File file, OntologyTermFetcher fetcher, ComplexExpansionMethod<I,B> expansionMethod)	Constructor for AbstractMIJsonWriter.
AbstractMIJsonWriter(OutputStream output, OntologyTermFetcher fetcher, ComplexExpansionMethod<I,B> expansionMethod)	Constructor for AbstractMIJsonWriter.
AbstractMIJsonWriter(Writer writer, OntologyTermFetcher fetcher, ComplexExpansionMethod<I,B> expansionMethod)	Constructor for AbstractMIJsonWriter.
LightMIJsonWriter(File file, OntologyTermFetcher fetcher, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMIJsonWriter.
LightMIJsonWriter(OutputStream output, OntologyTermFetcher fetcher, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMIJsonWriter.
LightMIJsonWriter(Writer writer, OntologyTermFetcher fetcher, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMIJsonWriter.
MIJsonEvidenceWriter(File file, OntologyTermFetcher fetcher, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for MIJsonEvidenceWriter.
MIJsonEvidenceWriter(OutputStream output, OntologyTermFetcher fetcher, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for MIJsonEvidenceWriter.
MIJsonEvidenceWriter(Writer writer, OntologyTermFetcher fetcher, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for MIJsonEvidenceWriter.
MIJsonModelledWriter(File file, OntologyTermFetcher fetcher, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for MIJsonModelledWriter.
MIJsonModelledWriter(OutputStream output, OntologyTermFetcher fetcher, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for MIJsonModelledWriter.
MIJsonModelledWriter(Writer writer, OntologyTermFetcher fetcher, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for MIJsonModelledWriter.
MIJsonWriter(File file, OntologyTermFetcher fetcher, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for MIJsonWriter.
MIJsonWriter(OutputStream output, OntologyTermFetcher fetcher, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for MIJsonWriter.
MIJsonWriter(Writer writer, OntologyTermFetcher fetcher, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for MIJsonWriter.

Uses of ComplexExpansionMethod in psidev.psi.mi.jami.tab.io.writer

Methods in psidev.psi.mi.jami.tab.io.writer that return ComplexExpansionMethod

Modifier and Type	Method	Description
protected ComplexExpansionMethod<T,B>	AbstractMitabWriter.getExpansionMethod()	Getter for the field expansionMethod.

Methods in psidev.psi.mi.jami.tab.io.writer with parameters of type ComplexExpansionMethod

Modifier and Type	Method	Description
protected abstract void	AbstractMitabWriter.initialiseExpansionMethod(ComplexExpansionMethod<T,B> expansionMethod)	initialiseExpansionMethod.
protected void	LightMitab25Writer.initialiseExpansionMethod(ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected void	Mitab25EvidenceWriter.initialiseExpansionMethod(ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	initialiseExpansionMethod.
protected void	Mitab25ModelledWriter.initialiseExpansionMethod(ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected void	Mitab25Writer.initialiseExpansionMethod(ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected void	AbstractMitabWriter.setExpansionMethod(ComplexExpansionMethod<T,B> expansionMethod)	Setter for the field expansionMethod.

Constructors in psidev.psi.mi.jami.tab.io.writer with parameters of type ComplexExpansionMethod

Constructor	Description
AbstractMitabWriter(File file, ComplexExpansionMethod<T,B> expansionMethod)	Constructor for AbstractMitabWriter.
AbstractMitabWriter(OutputStream output, ComplexExpansionMethod<T,B> expansionMethod)	Constructor for AbstractMitabWriter.
AbstractMitabWriter(Writer writer, ComplexExpansionMethod<T,B> expansionMethod)	Constructor for AbstractMitabWriter.
LightMitab25Writer(File file, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMitab25Writer.
LightMitab25Writer(OutputStream output, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMitab25Writer.
LightMitab25Writer(Writer writer, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMitab25Writer.
LightMitab26Writer(File file, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMitab26Writer.
LightMitab26Writer(OutputStream output, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMitab26Writer.
LightMitab26Writer(Writer writer, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMitab26Writer.
LightMitab27Writer(File file, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMitab27Writer.
LightMitab27Writer(OutputStream output, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMitab27Writer.
LightMitab27Writer(Writer writer, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMitab27Writer.
LightMitab28Writer(File file, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMitab28Writer.
LightMitab28Writer(OutputStream output, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMitab28Writer.
LightMitab28Writer(Writer writer, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for LightMitab28Writer.
Mitab25EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab25EvidenceWriter.
Mitab25EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab25EvidenceWriter.
Mitab25EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab25EvidenceWriter.
Mitab25ModelledWriter(File file, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab25ModelledWriter.
Mitab25ModelledWriter(OutputStream output, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab25ModelledWriter.
Mitab25ModelledWriter(Writer writer, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab25ModelledWriter.
Mitab25Writer(File file, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab25Writer.
Mitab25Writer(OutputStream output, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab25Writer.
Mitab25Writer(Writer writer, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab25Writer.
Mitab26EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab26EvidenceWriter.
Mitab26EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab26EvidenceWriter.
Mitab26EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab26EvidenceWriter.
Mitab26ModelledWriter(File file, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab26ModelledWriter.
Mitab26ModelledWriter(OutputStream output, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab26ModelledWriter.
Mitab26ModelledWriter(Writer writer, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab26ModelledWriter.
Mitab26Writer(File file, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab26Writer.
Mitab26Writer(OutputStream output, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab26Writer.
Mitab26Writer(Writer writer, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab26Writer.
Mitab27EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab27EvidenceWriter.
Mitab27EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab27EvidenceWriter.
Mitab27EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab27EvidenceWriter.
Mitab27ModelledWriter(File file, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab27ModelledWriter.
Mitab27ModelledWriter(OutputStream output, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab27ModelledWriter.
Mitab27ModelledWriter(Writer writer, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab27ModelledWriter.
Mitab27Writer(File file, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab27Writer.
Mitab27Writer(OutputStream output, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab27Writer.
Mitab27Writer(Writer writer, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab27Writer.
Mitab28EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab28EvidenceWriter.
Mitab28EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab28EvidenceWriter.
Mitab28EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab28EvidenceWriter.
Mitab28ModelledWriter(File file, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab28ModelledWriter.
Mitab28ModelledWriter(OutputStream output, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab28ModelledWriter.
Mitab28ModelledWriter(Writer writer, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab28ModelledWriter.
Mitab28Writer(File file, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab28Writer.
Mitab28Writer(OutputStream output, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab28Writer.
Mitab28Writer(Writer writer, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab28Writer.

Uses of ComplexExpansionMethod in psidev.psi.mi.jami.tab.io.writer.extended

Methods in psidev.psi.mi.jami.tab.io.writer.extended with parameters of type ComplexExpansionMethod

Modifier and Type	Method	Description
protected void	Mitab25EvidenceWriter.initialiseExpansionMethod(ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	initialiseExpansionMethod.
protected void	Mitab25ModelledWriter.initialiseExpansionMethod(ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected void	Mitab25Writer.initialiseExpansionMethod(ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	initialiseExpansionMethod.

Constructors in psidev.psi.mi.jami.tab.io.writer.extended with parameters of type ComplexExpansionMethod

Constructor	Description
Mitab25EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab25EvidenceWriter.
Mitab25EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab25EvidenceWriter.
Mitab25EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab25EvidenceWriter.
Mitab25ModelledWriter(File file, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab25ModelledWriter.
Mitab25ModelledWriter(OutputStream output, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab25ModelledWriter.
Mitab25ModelledWriter(Writer writer, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab25ModelledWriter.
Mitab25Writer(File file, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab25Writer.
Mitab25Writer(OutputStream output, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab25Writer.
Mitab25Writer(Writer writer, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab25Writer.
Mitab26EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab26EvidenceWriter.
Mitab26EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab26EvidenceWriter.
Mitab26EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab26EvidenceWriter.
Mitab26ModelledWriter(File file, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab26ModelledWriter.
Mitab26ModelledWriter(OutputStream output, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab26ModelledWriter.
Mitab26ModelledWriter(Writer writer, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab26ModelledWriter.
Mitab26Writer(File file, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab26Writer.
Mitab26Writer(OutputStream output, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab26Writer.
Mitab26Writer(Writer writer, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab26Writer.
Mitab27EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab27EvidenceWriter.
Mitab27EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab27EvidenceWriter.
Mitab27EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab27EvidenceWriter.
Mitab27ModelledWriter(File file, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab27ModelledWriter.
Mitab27ModelledWriter(OutputStream output, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab27ModelledWriter.
Mitab27ModelledWriter(Writer writer, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab27ModelledWriter.
Mitab27Writer(File file, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab27Writer.
Mitab27Writer(OutputStream output, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab27Writer.
Mitab27Writer(Writer writer, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab27Writer.
Mitab28EvidenceWriter(File file, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab28EvidenceWriter.
Mitab28EvidenceWriter(OutputStream output, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab28EvidenceWriter.
Mitab28EvidenceWriter(Writer writer, ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence> expansionMethod)	Constructor for Mitab28EvidenceWriter.
Mitab28ModelledWriter(File file, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab28ModelledWriter.
Mitab28ModelledWriter(OutputStream output, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab28ModelledWriter.
Mitab28ModelledWriter(Writer writer, ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction> expansionMethod)	Constructor for Mitab28ModelledWriter.
Mitab28Writer(File file, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab28Writer.
Mitab28Writer(OutputStream output, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab28Writer.
Mitab28Writer(Writer writer, ComplexExpansionMethod<Interaction,BinaryInteraction> expansionMethod)	Constructor for Mitab28Writer.

Uses of ComplexExpansionMethod in psidev.psi.mi.jami.xml.io.parser

Methods in psidev.psi.mi.jami.xml.io.parser that return ComplexExpansionMethod

Modifier and Type	Method	Description
protected ComplexExpansionMethod<T,B>	AbstractPsixmlBinaryParser.getExpansionMethod()	Getter for the field expansionMethod.
protected abstract ComplexExpansionMethod<T,B>	AbstractPsixmlBinaryParser.initialiseDefaultExpansionMethod()	initialiseDefaultExpansionMethod.
protected ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence>	FullXmlBinaryEvidenceParser.initialiseDefaultExpansionMethod()	initialiseDefaultExpansionMethod.
protected ComplexExpansionMethod<Interaction,BinaryInteraction>	FullXmlBinaryParser.initialiseDefaultExpansionMethod()	initialiseDefaultExpansionMethod.
protected ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction>	FullXmlModelledBinaryParser.initialiseDefaultExpansionMethod()	initialiseDefaultExpansionMethod.
protected ComplexExpansionMethod<Interaction,BinaryInteraction>	LightFullXmlBinaryParser.initialiseDefaultExpansionMethod()	initialiseDefaultExpansionMethod.
protected ComplexExpansionMethod<Interaction,BinaryInteraction>	LightXmlBinaryParser.initialiseDefaultExpansionMethod()	initialiseDefaultExpansionMethod.
protected ComplexExpansionMethod<InteractionEvidence,BinaryInteractionEvidence>	XmlBinaryEvidenceParser.initialiseDefaultExpansionMethod()	initialiseDefaultExpansionMethod.
protected ComplexExpansionMethod<Interaction,BinaryInteraction>	XmlBinaryParser.initialiseDefaultExpansionMethod()	initialiseDefaultExpansionMethod.
protected ComplexExpansionMethod<ModelledInteraction,ModelledBinaryInteraction>	XmlModelledBinaryParser.initialiseDefaultExpansionMethod()	initialiseDefaultExpansionMethod.

Methods in psidev.psi.mi.jami.xml.io.parser with parameters of type ComplexExpansionMethod

Modifier and Type	Method	Description
void	AbstractPsixmlBinaryParser.setExpansionMethod(ComplexExpansionMethod<T,B> expansionMethod)	Setter for the field expansionMethod.

Uses of ComplexExpansionMethod in psidev.psi.mi.jami.xml.model.extension.datasource

Methods in psidev.psi.mi.jami.xml.model.extension.datasource that return ComplexExpansionMethod

Modifier and Type	Method	Description
protected ComplexExpansionMethod<T,B>	AbstractPsiXmlBinarySource.getComplexExpansion()	Getter for the field complexExpansion.
protected ComplexExpansionMethod<T,B>	AbstractPsiXmlBinaryStream.getComplexExpansion()	Getter for the field complexExpansion.

Methods in psidev.psi.mi.jami.xml.model.extension.datasource with parameters of type ComplexExpansionMethod

Modifier and Type	Method	Description
protected void	AbstractPsiXmlBinarySource.initialiseExpansionMethod(ComplexExpansionMethod<? extends Interaction,? extends BinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected void	AbstractPsiXmlBinaryStream.initialiseExpansionMethod(ComplexExpansionMethod<? extends Interaction,? extends BinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected abstract void	AbstractPsiXmlStream.initialiseExpansionMethod(ComplexExpansionMethod<? extends Interaction,? extends BinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected void	LightXmlSource.initialiseExpansionMethod(ComplexExpansionMethod<? extends Interaction,? extends BinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected void	LightXmlStreamSource.initialiseExpansionMethod(ComplexExpansionMethod<? extends Interaction,? extends BinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected void	XmlComplexSource.initialiseExpansionMethod(ComplexExpansionMethod<? extends Interaction,? extends BinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected void	XmlComplexStreamSource.initialiseExpansionMethod(ComplexExpansionMethod<? extends Interaction,? extends BinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected void	XmlEvidenceSource.initialiseExpansionMethod(ComplexExpansionMethod<? extends Interaction,? extends BinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected void	XmlEvidenceStreamSource.initialiseExpansionMethod(ComplexExpansionMethod<? extends Interaction,? extends BinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected void	XmlModelledSource.initialiseExpansionMethod(ComplexExpansionMethod<? extends Interaction,? extends BinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected void	XmlModelledStreamSource.initialiseExpansionMethod(ComplexExpansionMethod<? extends Interaction,? extends BinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected void	XmlSource.initialiseExpansionMethod(ComplexExpansionMethod<? extends Interaction,? extends BinaryInteraction> expansionMethod)	initialiseExpansionMethod.
protected void	XmlStreamSource.initialiseExpansionMethod(ComplexExpansionMethod<? extends Interaction,? extends BinaryInteraction> expansionMethod)	initialiseExpansionMethod.