Uses of Interface
psidev.psi.mi.jami.xml.io.writer.elements.PsiXmlElementWriter

Packages that use PsiXmlElementWriter

Package	Description
psidev.psi.mi.jami.xml.io.writer
psidev.psi.mi.jami.xml.io.writer.compact
psidev.psi.mi.jami.xml.io.writer.elements
psidev.psi.mi.jami.xml.io.writer.elements.impl
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml253
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml254
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30
psidev.psi.mi.jami.xml.io.writer.expanded
psidev.psi.mi.jami.xml.utils

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer

Methods in psidev.psi.mi.jami.xml.io.writer with parameters of type PsiXmlElementWriter

Modifier and Type	Method	Description
protected abstract void	AbstractXmlWriter.initialiseOptionalWriters(PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlElementWriter<Interactor> interactorWriter)	initialiseOptionalWriters.
void	AbstractXmlWriter.setAnnotationsWriter(PsiXmlElementWriter<Annotation> annotationsWriter)	Setter for the field annotationsWriter.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.compact

Methods in psidev.psi.mi.jami.xml.io.writer.compact that return PsiXmlElementWriter

Modifier and Type	Method	Description
protected PsiXmlElementWriter<String>	AbstractCompactXmlWriter.getAvailabilityWriter()	Getter for the field availabilityWriter.
protected PsiXmlElementWriter<Interactor>	AbstractCompactXmlWriter.getInteractorWriter()	Getter for the field interactorWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.compact with parameters of type PsiXmlElementWriter

Modifier and Type	Method	Description
protected void	AbstractCompactXmlWriter.initialiseOptionalWriters(PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlElementWriter<Interactor> interactorWriter)	initialiseOptionalWriters.
protected void	AbstractCompactXmlMixWriter.setAvailabilityWriter(PsiXmlElementWriter<String> availabilityWriter)	Setter for the field availabilityWriter.
protected void	AbstractCompactXmlWriter.setAvailabilityWriter(PsiXmlElementWriter<String> availabilityWriter)	Setter for the field availabilityWriter.
protected void	AbstractCompactXmlMixWriter.setInteractorWriter(PsiXmlElementWriter<Interactor> interactorWriter)	Setter for the field interactorWriter.
protected void	AbstractCompactXmlWriter.setInteractorWriter(PsiXmlElementWriter<Interactor> interactorWriter)	Setter for the field interactorWriter.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements

Subinterfaces of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements

Modifier and Type	Interface	Description
interface	CompactPsiXmlElementWriter<T>	Interface for a compact XML element writer.
interface	ExpandedPsiXmlElementWriter<T>	Interface for an expanded XML element writer.
interface	PsiXmlExperimentWriter	PsiXml Experiment Writer
interface	PsiXmlExtendedInteractionWriter<T extends Interaction>	Interface for interaction writers writing extensions
interface	PsiXmlInteractionWriter<T extends Interaction>	Interface for PSI-XML interaction writers that have to write an experiment in XML even if the interaction does not have any experimental details
interface	PsiXmlParameterWriter	Psi XML writer for parameters.
interface	PsiXmlParticipantWriter<T extends Participant>	Interface for PSI-XML participant writers.
interface	PsiXmlPublicationWriter	Interface for XmlPublicationWriter.
interface	PsiXmlSourceWriter	Interface for PSI-XML source writers

Methods in psidev.psi.mi.jami.xml.io.writer.elements that return PsiXmlElementWriter

Modifier and Type	Method	Description
static PsiXmlElementWriter<Alias>	PsiXmlElementWriterFactory.createAliasWriter(XMLStreamWriter streamWriter)	createAliasWriter.
static PsiXmlElementWriter<Allostery>	PsiXmlElementWriterFactory.createAllosteryWriter(XMLStreamWriter streamWriter, boolean expanded, PsiXmlObjectCache objectIndex, PsiXmlVariableNameWriter<CvTerm> cvWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlPublicationWriter publicationWriter)	createAllosteryWriter.
static PsiXmlElementWriter<Annotation>	PsiXmlElementWriterFactory.createAnnotationWriter(XMLStreamWriter streamWriter)	createAnnotationWriter.
static PsiXmlElementWriter<String>	PsiXmlElementWriterFactory.createAvailabilityWriter(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex)	createAvailabilityWriter.
static PsiXmlElementWriter<Set<Feature>>	PsiXmlElementWriterFactory.createBindingFeaturesWriter(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex)	createBindingFeaturesWriter.
static PsiXmlElementWriter<Checksum>	PsiXmlElementWriterFactory.createChecksumWriter(XMLStreamWriter streamWriter)	createChecksumWriter.
static PsiXmlElementWriter<Confidence>[]	PsiXmlElementWriterFactory.createConfidenceWriters(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlVariableNameWriter<CvTerm> confidenceTypeWriter, PsiXmlPublicationWriter publicationWriter)	createConfidenceWriters.
static PsiXmlElementWriter<CooperativityEvidence>	PsiXmlElementWriterFactory.createCooperativityEvidenceWriter(XMLStreamWriter streamWriter, boolean expanded, PsiXmlVariableNameWriter<CvTerm> cvWriter, PsiXmlPublicationWriter publicationWriter)	createCooperativityEvidenceWriter.
static PsiXmlElementWriter<AbstractExperimentalInteractor>	PsiXmlElementWriterFactory.createExperimentalInteractorWriter(XMLStreamWriter streamWriter, PsiXmlVersion version, PsiXmlObjectCache objectIndex, PsiXmlType xmlType)	createExperimentalInteractorWriter.
static PsiXmlElementWriter<AbstractInferredInteraction>	PsiXmlElementWriterFactory.createExtendedInferredInteractionWriter(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex)	createExtendedInferredInteractionWriter.
static <F extends Feature> PsiXmlElementWriter<F>[]	PsiXmlElementWriterFactory.createFeatureWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, InteractionCategory category, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlVariableNameWriter<CvTerm> featureTypeWriter, PsiXmlParameterWriter parameterWriter)	createFeatureWriter.
static PsiXmlElementWriter<Organism>	PsiXmlElementWriterFactory.createHostOrganismWriter(XMLStreamWriter streamWriter, PsiXmlVersion version, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> annotationWriter, PsiXmlXrefWriter xrefWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter)	createHostOrganismWriter.
static PsiXmlElementWriter<Set<Feature>>	PsiXmlElementWriterFactory.createInferredInteractionWriter(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex)	createInferredInteractionWriter.
static PsiXmlElementWriter<Interactor>	PsiXmlElementWriterFactory.createInteractorWriter(PsiXmlVersion version, XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlVariableNameWriter<CvTerm> interactorTypeWriter, PsiXmlElementWriter<Organism> organismWriter, PsiXmlElementWriter<Checksum> checksumWriter)	createInteractorWriter.
static PsiXmlElementWriter<Organism>	PsiXmlElementWriterFactory.createOrganismWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> annotationWriter, PsiXmlXrefWriter xrefWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter)	createOrganismWriter.
static <P extends ParticipantCandidate> PsiXmlElementWriter<P>[]	PsiXmlElementWriterFactory.createParticipantCandidateWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory category, PsiXmlElementWriter<Interactor> interactorWriter, PsiXmlElementWriter<ModelledFeature> modelledFeatureWriter, PsiXmlElementWriter<FeatureEvidence> featureEvidenceWriter)	createParticipantCandidateWriter.
static PsiXmlElementWriter<Position>[]	PsiXmlElementWriterFactory.createPositionsWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlVariableNameWriter<CvTerm> statusWriter)	createPositionsWriter.
static PsiXmlElementWriter<Preassembly>	PsiXmlElementWriterFactory.createPreassemblyWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVariableNameWriter<CvTerm> cvWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlPublicationWriter publicationWriter)	createPreassemblyWriter.
static PsiXmlElementWriter<Range>	PsiXmlElementWriterFactory.createRangeWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlXrefWriter refWriter, PsiXmlVariableNameWriter<CvTerm> statusWriter)	createRangeWriter.
static PsiXmlElementWriter<ResultingSequence>	PsiXmlElementWriterFactory.createResultingSequenceWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlXrefWriter refWriter)	createResultingSequenceWriter.
static PsiXmlElementWriter<VariableParameterValueSet>	PsiXmlElementWriterFactory.createVariableParameterValueSetWriter(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex)	createVariableParameterValueSetWriter.
static PsiXmlElementWriter<VariableParameterValue>	PsiXmlElementWriterFactory.createVariableParameterValueWriter(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex)	createVariableParameterValueWriter.
static PsiXmlElementWriter<VariableParameter>	PsiXmlElementWriterFactory.createVariableParameterWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVariableNameWriter<CvTerm> cvWriter)	createVariableParameterWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements with parameters of type PsiXmlElementWriter

Modifier and Type	Method	Description
static PsiXmlElementWriter<Allostery>	PsiXmlElementWriterFactory.createAllosteryWriter(XMLStreamWriter streamWriter, boolean expanded, PsiXmlObjectCache objectIndex, PsiXmlVariableNameWriter<CvTerm> cvWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlPublicationWriter publicationWriter)	createAllosteryWriter.
static PsiXmlVariableNameWriter<CvTerm>	PsiXmlElementWriterFactory.createCvWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlXrefWriter primaryRefWriter)	createCvWriter.
static PsiXmlInteractionWriter[]	PsiXmlElementWriterFactory.createDefaultPsiXmlInteractionWriters(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory interactionCategory, ComplexType complexType, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter[] confidenceWriters, PsiXmlElementWriter<Checksum> checksumWriter, PsiXmlVariableNameWriter<CvTerm> interactionTypeWriter, PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlParameterWriter[] parameterWriters, PsiXmlParticipantWriter[] participantWriters, PsiXmlElementWriter inferredInteractionWriter, PsiXmlPublicationWriter publicationWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter)	createDefaultPsiXmlInteractionWriters.
static PsiXmlVariableNameWriter<CvTerm>	PsiXmlElementWriterFactory.createExperimentalCvWriter(XMLStreamWriter streamWriter, PsiXmlVersion version, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlXrefWriter primaryRefWriter)	createExperimentalCvWriter.
static PsiXmlExperimentWriter	PsiXmlElementWriterFactory.createExperimentWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, boolean named, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlPublicationWriter publicationWriter, PsiXmlElementWriter<Organism> nonExperimentalHostOrganismWriter, PsiXmlVariableNameWriter<CvTerm> detectionMethodWriter, PsiXmlElementWriter<Confidence> confidenceWriter)	createExperimentWriter.
static PsiXmlInteractionWriter[]	PsiXmlElementWriterFactory.createExtendedPsiXmlInteractionWriters(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory interactionCategory, ComplexType complexType, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter[] confidenceWriters, PsiXmlElementWriter<Checksum> checksumWriter, PsiXmlVariableNameWriter<CvTerm> interactionTypeWriter, PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlParameterWriter[] parameterWriters, PsiXmlParticipantWriter[] participantWriters, PsiXmlElementWriter inferredInteractionWriter, PsiXmlPublicationWriter publicationWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter)	createExtendedPsiXmlInteractionWriters.
static <F extends Feature> PsiXmlElementWriter<F>[]	PsiXmlElementWriterFactory.createFeatureWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, InteractionCategory category, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlVariableNameWriter<CvTerm> featureTypeWriter, PsiXmlParameterWriter parameterWriter)	createFeatureWriter.
static PsiXmlElementWriter<Organism>	PsiXmlElementWriterFactory.createHostOrganismWriter(XMLStreamWriter streamWriter, PsiXmlVersion version, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> annotationWriter, PsiXmlXrefWriter xrefWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter)	createHostOrganismWriter.
static PsiXmlInteractionWriter[]	PsiXmlElementWriterFactory.createInteractionWritersFor(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory interactionCategory, ComplexType complexType, boolean extended, boolean named, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter[] confidenceWriters, PsiXmlElementWriter<Checksum> checksumWriter, PsiXmlVariableNameWriter<CvTerm> interactionTypeWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter, PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlElementWriter<Interactor> interactorWriter, PsiXmlPublicationWriter publicationWriter)	createInteractionWritersFor.
static PsiXmlElementWriter<Interactor>	PsiXmlElementWriterFactory.createInteractorWriter(PsiXmlVersion version, XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlVariableNameWriter<CvTerm> interactorTypeWriter, PsiXmlElementWriter<Organism> organismWriter, PsiXmlElementWriter<Checksum> checksumWriter)	createInteractorWriter.
static PsiXmlInteractionWriter[]	PsiXmlElementWriterFactory.createNamedPsiXmlInteractionWriters(XMLStreamWriter streamWriter, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory interactionCategory, ComplexType complexType, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter[] confidenceWriters, PsiXmlElementWriter<Checksum> checksumWriter, PsiXmlVariableNameWriter<CvTerm> interactionTypeWriter, PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlParameterWriter[] parameterWriters, PsiXmlParticipantWriter[] participantWriters, PsiXmlElementWriter inferredInteractionWriter, PsiXmlPublicationWriter publicationWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter)	createNamedPsiXmlInteractionWriters.
static PsiXmlVariableNameWriter<CvTerm>	PsiXmlElementWriterFactory.createOpenCvWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter)	createOpenCvWriter.
static PsiXmlElementWriter<Organism>	PsiXmlElementWriterFactory.createOrganismWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> annotationWriter, PsiXmlXrefWriter xrefWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter)	createOrganismWriter.
static <P extends ParticipantCandidate> PsiXmlElementWriter<P>[]	PsiXmlElementWriterFactory.createParticipantCandidateWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory category, PsiXmlElementWriter<Interactor> interactorWriter, PsiXmlElementWriter<ModelledFeature> modelledFeatureWriter, PsiXmlElementWriter<FeatureEvidence> featureEvidenceWriter)	createParticipantCandidateWriter.
static <P extends Participant> PsiXmlParticipantWriter<P>[]	PsiXmlElementWriterFactory.createParticipantWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory category, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter<Confidence> confidenceWriter, PsiXmlElementWriter<Interactor> interactorWriter, PsiXmlVariableNameWriter<CvTerm> cvWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter, PsiXmlParameterWriter parameterWriter)	createParticipantWriter.
static PsiXmlElementWriter<Preassembly>	PsiXmlElementWriterFactory.createPreassemblyWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVariableNameWriter<CvTerm> cvWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlPublicationWriter publicationWriter)	createPreassemblyWriter.
static PsiXmlPublicationWriter	PsiXmlElementWriterFactory.createPublicationWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlVersion version)	createPublicationWriter.
static PsiXmlSourceWriter	PsiXmlElementWriterFactory.createSourceWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlVersion version, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlPublicationWriter publicationWriter)	createSourceWriter.
static PsiXmlXrefWriter	PsiXmlElementWriterFactory.createXrefWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlElementWriter<Annotation> annotationWriter)	createXrefWriter.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	AbstractXmlSourceWriter	Abstract class for writer of a source in an entry.
class	XmlAliasWriter	XML25 writer for aliases
class	XmlAnnotationWriter	XML writer for attributes
class	XmlAvailabilityWriter	XML availability writer
class	XmlBeginPositionWriter	XML writer for the begin position of a range
class	XmlChecksumWriter	Xml writer of checksums
class	XmlConfidenceWriter	Xml25 writer for confidences
class	XmlEndPositionWriter	XML writer for the end position of a range
class	XmlHostOrganismWriter	PSI-XML writer for host organism
class	XmlInferredInteractionWriter	XML writer for Inferred interactions
class	XmlInteractorWriter	Xml interactor writer
class	XmlOrganismWriter	PSI-XML writer for organism
class	XmlRangeWriter	Xml writer for a feature range

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl that return PsiXmlElementWriter

Modifier and Type	Method	Description
PsiXmlElementWriter<Alias>	AbstractXmlSourceWriter.getAliasWriter()	Getter for the field aliasWriter.
PsiXmlElementWriter<Alias>	XmlCvTermWriter.getAliasWriter()	Getter for the field aliasWriter.
PsiXmlElementWriter<Alias>	XmlInteractorWriter.getAliasWriter()	Getter for the field aliasWriter.
PsiXmlElementWriter<Annotation>	AbstractXmlSourceWriter.getAttributeWriter()	Getter for the field attributeWriter.
PsiXmlElementWriter<Annotation>	XmlInteractorWriter.getAttributeWriter()	Getter for the field attributeWriter.
PsiXmlElementWriter<Annotation>	XmlOpenCvTermWriter.getAttributeWriter()	Getter for the field attributeWriter.
PsiXmlElementWriter<Checksum>	XmlInteractorWriter.getChecksumWriter()	Getter for the field checksumWriter.
PsiXmlElementWriter<Organism>	XmlInteractorWriter.getOrganismWriter()	Getter for the field organismWriter.
PsiXmlElementWriter<Publication>	AbstractXmlSourceWriter.getPublicationWriter()	Getter for the field publicationWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl with parameters of type PsiXmlElementWriter

Modifier and Type	Method	Description
void	AbstractXmlSourceWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	XmlCvTermWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	XmlInteractorWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	AbstractXmlSourceWriter.setAttributeWriter(PsiXmlElementWriter<Annotation> attributeWriter)	Setter for the field attributeWriter.
void	XmlInteractorWriter.setAttributeWriter(PsiXmlElementWriter<Annotation> attributeWriter)	Setter for the field attributeWriter.
void	XmlOpenCvTermWriter.setAttributeWriter(PsiXmlElementWriter<Annotation> attributeWriter)	Setter for the field attributeWriter.
void	XmlInteractorWriter.setChecksumWriter(PsiXmlElementWriter<Checksum> checksumWriter)	Setter for the field checksumWriter.
void	XmlInteractorWriter.setOrganismWriter(PsiXmlElementWriter<Organism> organismWriter)	Setter for the field organismWriter.
void	AbstractXmlSourceWriter.setPublicationWriter(PsiXmlElementWriter<Publication> publicationWriter)	Setter for the field publicationWriter.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	AbstractXmlExperimentalInteractorWriter	Abstract class for experimental interactor XML writer
class	AbstractXmlExperimentWriter	Abstract PSI-XML experiment writer
class	AbstractXmlFeatureWriter<F extends Feature>	Abstract writer for Xml25Feature.
class	AbstractXmlInteractionEvidenceWriter<I extends InteractionEvidence>	Abstract class for interaction evidence writers
class	AbstractXmlInteractionWriter<T extends Interaction,P extends Participant>	Abstract writer of interaction
class	AbstractXmlModelledInteractionWriter<I extends ModelledInteraction>	Abstract class for XML writers of modelled interaction
class	AbstractXmlModelledParticipantWriter	abstract writer for a modelled participant.
class	AbstractXmlOrganismWriter	Abstract class forPSI-XML writer for organism
class	AbstractXmlParameterWriter	Abstract XML writer of a parameter
class	AbstractXmlParticipantEvidenceWriter	Abstract class for writer of participant evidences
class	AbstractXmlParticipantWriter<P extends Participant,F extends Feature>	Abstract Xml writer for participant
class	AbstractXmlPositionWriter	Abstract Xml writer for a range position
class	AbstractXmlPublicationWriter	Abstract Xml writer for publications (bibref objects)
class	AbstractXmlRangeWriter	Abstract Xml writer for a feature range

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts that return PsiXmlElementWriter

Modifier and Type	Method	Description
PsiXmlElementWriter<Alias>	AbstractXmlFeatureWriter.getAliasWriter()	Getter for the field aliasWriter.
PsiXmlElementWriter<Alias>	AbstractXmlModelledInteractionWriter.getAliasWriter()	Getter for the field aliasWriter.
PsiXmlElementWriter<Alias>	AbstractXmlOrganismWriter.getAliasWriter()	Getter for the field aliasWriter.
PsiXmlElementWriter<Alias>	AbstractXmlParticipantWriter.getAliasWriter()	Getter for the field aliasWriter.
PsiXmlElementWriter<Annotation>	AbstractXmlExperimentWriter.getAttributeWriter()	Getter for the field attributeWriter.
PsiXmlElementWriter<Annotation>	AbstractXmlFeatureWriter.getAttributeWriter()	Getter for the field attributeWriter.
PsiXmlElementWriter<Annotation>	AbstractXmlInteractionWriter.getAttributeWriter()	Getter for the field attributeWriter.
PsiXmlElementWriter<Annotation>	AbstractXmlParticipantWriter.getAttributeWriter()	Getter for the field attributeWriter.
PsiXmlElementWriter<Annotation>	AbstractXmlPublicationWriter.getAttributeWriter()	Getter for the field attributeWriter.
PsiXmlElementWriter<String>	AbstractXmlInteractionEvidenceWriter.getAvailabilityWriter()	Getter for the field availabilityWriter.
PsiXmlElementWriter<Checksum>	AbstractXmlInteractionWriter.getChecksumWriter()	Getter for the field checksumWriter.
PsiXmlElementWriter<Confidence>	AbstractXmlExperimentWriter.getConfidenceWriter()	Getter for the field confidenceWriter.
PsiXmlElementWriter<Confidence>	AbstractXmlInteractionEvidenceWriter.getConfidenceWriter()	Getter for the field confidenceWriter.
PsiXmlElementWriter<Confidence>	AbstractXmlModelledInteractionWriter.getConfidenceWriter()	Getter for the field confidenceWriter.
PsiXmlElementWriter<Confidence>	AbstractXmlParticipantEvidenceWriter.getConfidenceWriter()	Getter for the field confidenceWriter.
PsiXmlElementWriter<Position>	AbstractXmlRangeWriter.getEndPositionWriter()	Getter for the field endPositionWriter.
PsiXmlElementWriter<F>	AbstractXmlParticipantWriter.getFeatureWriter()	Getter for the field featureWriter.
PsiXmlElementWriter<Organism>	AbstractXmlExperimentWriter.getHostOrganismWriter()	Getter for the field hostOrganismWriter.
PsiXmlElementWriter<Organism>	AbstractXmlParticipantEvidenceWriter.getHostOrganismWriter()	Getter for the field hostOrganismWriter.
PsiXmlElementWriter<Set<Feature>>	AbstractXmlInteractionWriter.getInferredInteractionWriter()	Getter for the field inferredInteractionWriter.
PsiXmlElementWriter<Interactor>	AbstractXmlParticipantWriter.getInteractorWriter()	Getter for the field interactorWriter.
PsiXmlElementWriter<Parameter>	AbstractXmlParticipantEvidenceWriter.getParameterWriter()	Getter for the field parameterWriter.
PsiXmlElementWriter<Range>	AbstractXmlFeatureWriter.getRangeWriter()	Getter for the field rangeWriter.
PsiXmlElementWriter<Position>	AbstractXmlRangeWriter.getStartPositionWriter()	Getter for the field startPositionWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts with parameters of type PsiXmlElementWriter

Modifier and Type	Method	Description
void	AbstractXmlFeatureWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	AbstractXmlModelledInteractionWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	AbstractXmlOrganismWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	AbstractXmlParticipantWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	AbstractXmlExperimentWriter.setAttributeWriter(PsiXmlElementWriter<Annotation> attributeWriter)	Setter for the field attributeWriter.
void	AbstractXmlFeatureWriter.setAttributeWriter(PsiXmlElementWriter<Annotation> attributeWriter)	Setter for the field attributeWriter.
void	AbstractXmlInteractionWriter.setAttributeWriter(PsiXmlElementWriter<Annotation> attributeWriter)	Setter for the field attributeWriter.
void	AbstractXmlParticipantWriter.setAttributeWriter(PsiXmlElementWriter<Annotation> attributeWriter)	Setter for the field attributeWriter.
void	AbstractXmlPublicationWriter.setAttributeWriter(PsiXmlElementWriter<Annotation> attributeWriter)	Setter for the field attributeWriter.
void	AbstractXmlInteractionEvidenceWriter.setAvailabilityWriter(PsiXmlElementWriter<String> availabilityWriter)	Setter for the field availabilityWriter.
void	AbstractXmlInteractionWriter.setChecksumWriter(PsiXmlElementWriter<Checksum> checksumWriter)	Setter for the field checksumWriter.
void	AbstractXmlExperimentWriter.setConfidenceWriter(PsiXmlElementWriter<Confidence> confidenceWriter)	Setter for the field confidenceWriter.
void	AbstractXmlInteractionEvidenceWriter.setConfidenceWriter(PsiXmlElementWriter<Confidence> confidenceWriter)	Setter for the field confidenceWriter.
void	AbstractXmlModelledInteractionWriter.setConfidenceWriter(PsiXmlElementWriter<Confidence> confidenceWriter)	Setter for the field confidenceWriter.
void	AbstractXmlParticipantEvidenceWriter.setConfidenceWriter(PsiXmlElementWriter<Confidence> confidenceWriter)	Setter for the field confidenceWriter.
void	AbstractXmlRangeWriter.setEndPositionWriter(PsiXmlElementWriter<Position> endPositionWriter)	Setter for the field endPositionWriter.
void	AbstractXmlParticipantWriter.setFeatureWriter(PsiXmlElementWriter<F> featureWriter)	Setter for the field featureWriter.
void	AbstractXmlExperimentWriter.setHostOrganismWriter(PsiXmlElementWriter<Organism> hostOrganismWriter)	Setter for the field hostOrganismWriter.
void	AbstractXmlParticipantEvidenceWriter.setHostOrganismWriter(PsiXmlElementWriter<Organism> hostOrganismWriter)	Setter for the field hostOrganismWriter.
void	AbstractXmlInteractionWriter.setInferredInteractionWriter(PsiXmlElementWriter<Set<Feature>> inferredInteractionWriter)	Setter for the field inferredInteractionWriter.
void	AbstractXmlParticipantWriter.setInteractorWriter(PsiXmlElementWriter<Interactor> interactorWriter)	Setter for the field interactorWriter.
void	AbstractXmlParticipantEvidenceWriter.setParameterWriter(PsiXmlElementWriter<Parameter> parameterWriter)	Setter for the field parameterWriter.
void	AbstractXmlFeatureWriter.setRangeWriter(PsiXmlElementWriter<Range> rangeWriter)	Setter for the field rangeWriter.
void	AbstractXmlRangeWriter.setStartPositionWriter(PsiXmlElementWriter<Position> startPositionWriter)	Setter for the field startPositionWriter.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25 that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	AbstractXmlFeatureEvidenceWriter	Abstract class for feature evidence 2.5 writers
class	AbstractXmlFeatureWriter<F extends Feature>	Abstract writer for Xml25Feature.
class	AbstractXmlInteractionEvidenceWriter<I extends InteractionEvidence>	Abstract class for interaction evidence writers
class	AbstractXmlInteractionWriter<T extends Interaction>	Abstract writer of interaction in PSI-XML 2.5
class	AbstractXmlModelledInteractionWriter<I extends ModelledInteraction>	Abstract class for XML 2.5 writers of modelled interaction
class	AbstractXmlModelledParticipantWriter	Abstract class for XML 2.5 writer of modelled participant
class	AbstractXmlNamedParticipantWriter	Abstract class for a named participant XML 2.5 writer
class	AbstractXmlParticipantEvidenceWriter	Abstract class for XML 2.5 writer of participant evidences
class	AbstractXmlParticipantWriter	Xml 2.5 writer for participant

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30 that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	AbstractXmlCooperativeEffectWriter<C extends CooperativeEffect>	Abstract Xml 3.0 writer for cooperative effect
class	AbstractXmlFeatureEvidenceWriter	Abstract class for feature evidence 3.0 writers
class	AbstractXmlFeatureWriter<F extends Feature>	Abstract writer for Xml30Feature.
class	AbstractXmlInteractionEvidenceWriter<I extends InteractionEvidence>	Abstract class for interaction evidence writers in PSI-MI XML 3.0
class	AbstractXmlModelledInteractionWriter<I extends ModelledInteraction>	Abstract class for XML 3.0 writers of modelled interaction
class	AbstractXmlModelledParticipantWriter	Abstract class for XML 3.0 writer of modelled participant
class	AbstractXmlParticipantCandidateWriter<P extends ParticipantCandidate,F extends Feature>	Abstract Xml writer for participant candidate
class	AbstractXmlParticipantEvidenceWriter	Abstract class for XML 3.0 writer of participant evidences

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30 that return PsiXmlElementWriter

Modifier and Type	Method	Description
PsiXmlElementWriter<Allostery>	AbstractXmlModelledInteractionWriter.getAllosteryWriter()	Getter for the field allosteryWriter.
PsiXmlElementWriter<Annotation>	AbstractXmlCooperativeEffectWriter.getAttributeWriter()	Getter for the field attributeWriter.
PsiXmlElementWriter<Set<Feature>>	AbstractXmlModelledInteractionWriter.getBindingFeaturesWriter()	Getter for the field bindingFeaturesWriter.
PsiXmlElementWriter<CooperativityEvidence>	AbstractXmlCooperativeEffectWriter.getCooperativityEvidenceWriter()	Getter for the field cooperativityEvidenceWriter.
PsiXmlElementWriter<F>	AbstractXmlParticipantCandidateWriter.getFeatureWriter()	Getter for the field featureWriter.
PsiXmlElementWriter<Interactor>	AbstractXmlParticipantCandidateWriter.getInteractorWriter()	Getter for the field interactorWriter.
PsiXmlElementWriter<Organism>	AbstractXmlModelledInteractionWriter.getOrganismWriter()	Getter for the field organismWriter.
PsiXmlElementWriter<ModelledParticipantCandidate>	AbstractXmlModelledParticipantWriter.getParticipantCandidateWriter()	Getter for the field participantCandidateWriter.
PsiXmlElementWriter<ExperimentalParticipantCandidate>	AbstractXmlParticipantEvidenceWriter.getParticipantCandidateWriter()	Getter for the field participantCandidateWriter.
PsiXmlElementWriter<Preassembly>	AbstractXmlModelledInteractionWriter.getPreAssemblyWriter()	Getter for the field preAssemblyWriter.
PsiXmlElementWriter<Stoichiometry>	AbstractXmlModelledParticipantWriter.getStoichiometryWriter()	Getter for the field stoichiometryWriter.
PsiXmlElementWriter<Stoichiometry>	AbstractXmlParticipantEvidenceWriter.getStoichiometryWriter()	Getter for the field stoichiometryWriter.
PsiXmlElementWriter<VariableParameterValueSet>	AbstractXmlInteractionEvidenceWriter.getVariableParameterValueSetWriter()	Getter for the field variableParameterValueSetWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30 with parameters of type PsiXmlElementWriter

Modifier and Type	Method	Description
void	AbstractXmlModelledInteractionWriter.setAllosteryWriter(PsiXmlElementWriter<Allostery> allosteryWriter)	Setter for the field allosteryWriter.
void	AbstractXmlCooperativeEffectWriter.setAttributeWriter(PsiXmlElementWriter<Annotation> attributeWriter)	Setter for the field attributeWriter.
void	AbstractXmlModelledInteractionWriter.setBindingFeaturesWriter(PsiXmlElementWriter<Set<Feature>> bindingFeaturesWriter)	Setter for the field bindingFeaturesWriter.
void	AbstractXmlCooperativeEffectWriter.setCooperativityEvidenceWriter(PsiXmlElementWriter<CooperativityEvidence> cooperativityEvidenceWriter)	Setter for the field cooperativityEvidenceWriter.
void	AbstractXmlParticipantCandidateWriter.setFeatureWriter(PsiXmlElementWriter<F> featureWriter)	Setter for the field featureWriter.
void	AbstractXmlParticipantCandidateWriter.setInteractorWriter(PsiXmlElementWriter<Interactor> interactorWriter)	Setter for the field interactorWriter.
void	AbstractXmlModelledInteractionWriter.setOrganismWriter(PsiXmlElementWriter<Organism> organismWriter)	Setter for the field organismWriter.
void	AbstractXmlModelledParticipantWriter.setParticipantCandidateWriter(PsiXmlElementWriter<ModelledParticipantCandidate> participantCandidateWriter)	Setter for the field participantCandidateWriter.
void	AbstractXmlParticipantEvidenceWriter.setParticipantCandidateWriter(PsiXmlElementWriter<ExperimentalParticipantCandidate> participantCandidateWriter)	Setter for the field participantCandidateWriter.
void	AbstractXmlModelledInteractionWriter.setPreAssemblyWriter(PsiXmlElementWriter<Preassembly> preAssemblyWriter)	Setter for the field preAssemblyWriter.
void	AbstractXmlModelledParticipantWriter.setStoichiometryWriter(PsiXmlElementWriter<Stoichiometry> stoichiometryWriter)	Setter for the field stoichiometryWriter.
void	AbstractXmlParticipantEvidenceWriter.setStoichiometryWriter(PsiXmlElementWriter<Stoichiometry> stoichiometryWriter)	Setter for the field stoichiometryWriter.
void	AbstractXmlInteractionEvidenceWriter.setVariableParameterValueSetWriter(PsiXmlElementWriter<VariableParameterValueSet> variableParameterValueSetWriter)	Setter for the field variableParameterValueSetWriter.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25 that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	XmlBasicBinaryInteractionWriter	Compact XML 2.5 writer for a basic binary interaction (ignore experimental details)
class	XmlBasicInteractionWriter	Compact XML 2.5 writer for a basic interaction (ignore experimental details)
class	XmlBinaryInteractionEvidenceWriter	Compact XML 2.5 writer for a binary interaction evidence (with full experimental details).
class	XmlComplexWriter	Compact XML 2.5 writer for a biological complex (ignore experimental details).
class	XmlInteractionEvidenceWriter	Compact XML 2.5 writer for an interaction evidence (with full experimental details).
class	XmlModelledBinaryInteractionWriter	Compact XML 2.5 writer for a modelled binary interaction (ignore experimental details).
class	XmlModelledInteractionWriter	Compact XML 2.5 writer for a modelled interaction (ignore experimental details).
class	XmlModelledParticipantWriter	Compact XML 2.5 writer for a modelled participant.
class	XmlNamedBinaryInteractionEvidenceWriter	Compact XML 2.5 writer for a named binary interaction evidence (with full experimental details).
class	XmlNamedBinaryInteractionWriter	Compact XML 2.5 writer for a basic binary interaction (ignore experimental details) which has a fullname and aliases in addition to a shortname
class	XmlNamedInteractionEvidenceWriter	Compact XML 2.5 writer for a named interaction evidence (with full experimental details).
class	XmlNamedInteractionWriter	Compact XML 2.5 writer for a basic interaction (ignore experimental details) which has a fullname and aliases in addition to a shortname
class	XmlNamedModelledBinaryInteractionWriter	Compact XML 2.5 writer for a modelled binary interaction (ignore experimental details) which have a fullname and aliases in addition to the shortname.
class	XmlNamedModelledInteractionWriter	Compact XML 2.5 writer for a modelled interaction (ignore experimental details) which have a fullname and aliases in addition to the shortname.
class	XmlNamedModelledParticipantWriter	Compact XML 2.5 writer for a named modelled participant having a fullname and a shortname.
class	XmlNamedParticipantEvidenceWriter	Compact Xml 2.5 writer for a named participant evidence with a shortname and a fullname.
class	XmlNamedParticipantWriter	Compact Xml 2.5 writer for a basic named participant with a shortname and a fullname.
class	XmlParticipantEvidenceWriter	Compact XML 2.5 writer for a participant evidence with full experimental details
class	XmlParticipantWriter	Compact XML 2.5 writer for a basic participant (ignore experimental details)

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25 that return PsiXmlElementWriter

Modifier and Type	Method	Description
PsiXmlElementWriter<Alias>	XmlNamedBinaryInteractionEvidenceWriter.getAliasWriter()	Getter for the field aliasWriter.
PsiXmlElementWriter<Alias>	XmlNamedBinaryInteractionWriter.getAliasWriter()	Getter for the field aliasWriter.
PsiXmlElementWriter<Alias>	XmlNamedInteractionEvidenceWriter.getAliasWriter()	Getter for the field aliasWriter.
PsiXmlElementWriter<Alias>	XmlNamedInteractionWriter.getAliasWriter()	Getter for the field aliasWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25 with parameters of type PsiXmlElementWriter

Modifier and Type	Method	Description
void	XmlNamedBinaryInteractionEvidenceWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	XmlNamedBinaryInteractionWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	XmlNamedInteractionEvidenceWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	XmlNamedInteractionWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30 that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	XmlBinaryInteractionEvidenceWriter	Compact XML 3.0 writer for a binary interaction evidence (with full experimental details).
class	XmlExperimentalParticipantCandidateWriter	Compact XML 3.0 writer for a participant evidence with full experimental details
class	XmlInteractionEvidenceWriter	Compact XML 3.0 writer for an interaction evidence (with full experimental details).
class	XmlModelledBinaryInteractionWriter	Compact XML 3.0 writer for a modelled binary interaction (ignore experimental details).
class	XmlModelledInteractionWriter	Compact XML 3.0 writer for a modelled interaction (ignore experimental details).
class	XmlModelledParticipantCandidateWriter	Compact XML 3.0 writer for a participant evidence with full experimental details
class	XmlModelledParticipantWriter	Compact XML 3.0 writer for a modelled participant.
class	XmlNamedBinaryInteractionEvidenceWriter	Compact XML 3.0 writer for a named binary interaction evidence (with full experimental details).
class	XmlNamedInteractionEvidenceWriter	Compact XML 3.0 writer for a named interaction evidence (with full experimental details).
class	XmlNamedModelledBinaryInteractionWriter	Compact XML 3.0 writer for a modelled binary interaction (ignore experimental details) which have a fullname and aliases in addition to the shortname.
class	XmlNamedModelledInteractionWriter	Compact XML 3.0 writer for a modelled interaction (ignore experimental details) which have a fullname and aliases in addition to the shortname.
class	XmlNamedModelledParticipantWriter	Compact XML 3.0 writer for a named modelled participant having a fullname and a shortname.
class	XmlNamedParticipantEvidenceWriter	Compact Xml 3.0 writer for a named participant evidence with a shortname and a fullname.
class	XmlParticipantEvidenceWriter	Compact XML 3.0 writer for a participant evidence with full experimental details

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30 that return PsiXmlElementWriter

Modifier and Type	Method	Description
PsiXmlElementWriter<Alias>	XmlNamedBinaryInteractionEvidenceWriter.getAliasWriter()	Getter for the field aliasWriter.
PsiXmlElementWriter<Alias>	XmlNamedInteractionEvidenceWriter.getAliasWriter()	Getter for the field aliasWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30 with parameters of type PsiXmlElementWriter

Modifier and Type	Method	Description
void	XmlNamedBinaryInteractionEvidenceWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	XmlNamedInteractionEvidenceWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25 that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	XmlBasicBinaryInteractionWriter	Expanded XML 2.5 writer for a basic binary interaction (ignore experimental details)
class	XmlBasicInteractionWriter	Expanded XML 2.5 writer for a basic interaction (ignore experimental details)
class	XmlBinaryInteractionEvidenceWriter	Expanded XML 2.5 writer for a binary interaction evidence (with full experimental details).
class	XmlComplexWriter	Expanded XML 2.5 writer for a biological complex (ignore experimental details).
class	XmlInteractionEvidenceWriter	Expanded XML 2.5 writer for an interaction evidence (with full experimental details).
class	XmlModelledBinaryInteractionWriter	Expanded XML 2.5 writer for a modelled binary interaction (ignore experimental details).
class	XmlModelledInteractionWriter	Expanded XML 2.5 writer for a modelled interaction (ignore experimental details).
class	XmlModelledParticipantWriter	Expanded XML 2.5 writer for a modelled participant.
class	XmlNamedBinaryInteractionEvidenceWriter	Expanded XML 2.5 writer for a named binary interaction evidence (with full experimental details).
class	XmlNamedBinaryInteractionWriter	Expanded XML 2.5 writer for a basic binary interaction (ignore experimental details).
class	XmlNamedInteractionEvidenceWriter	Expanded XML 2.5 writer for a named interaction evidence (with full experimental details).
class	XmlNamedInteractionWriter	Expanded XML 2.5 writer for a basic interaction (ignore experimental details).
class	XmlNamedModelledBinaryInteractionWriter	Expanded XML 2.5 writer for a binary modelled interaction (ignore experimental details) which have a fullname and aliases in addition to the shortname.
class	XmlNamedModelledInteractionWriter	Expanded XML 2.5 writer for a modelled interaction (ignore experimental details) which have a fullname and aliases in addition to the shortname.
class	XmlNamedModelledParticipantWriter	Expanded XML 2.5 writer for a named modelled participant having a fullname and a shortname.
class	XmlNamedParticipantEvidenceWriter	Expanded Xml 2.5 writer for a named participant evidence with a shortname and a fullname.
class	XmlNamedParticipantWriter	Expanded Xml 2.5 writer for a basic named participant with a shortname and a fullname.
class	XmlParticipantEvidenceWriter	Expanded XML 2.5 writer for a participant evidence with full experimental details
class	XmlParticipantWriter	Expanded XML 2.5 writer for a basic participant (ignore experimental details)

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25 that return PsiXmlElementWriter

Modifier and Type	Method	Description
PsiXmlElementWriter<Alias>	XmlNamedBinaryInteractionEvidenceWriter.getAliasWriter()	Getter for the field aliasWriter.
PsiXmlElementWriter<Alias>	XmlNamedBinaryInteractionWriter.getAliasWriter()	Getter for the field aliasWriter.
PsiXmlElementWriter<Alias>	XmlNamedInteractionEvidenceWriter.getAliasWriter()	Getter for the field aliasWriter.
PsiXmlElementWriter<Alias>	XmlNamedInteractionWriter.getAliasWriter()	Getter for the field aliasWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25 with parameters of type PsiXmlElementWriter

Modifier and Type	Method	Description
void	XmlNamedBinaryInteractionEvidenceWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	XmlNamedBinaryInteractionWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	XmlNamedInteractionEvidenceWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	XmlNamedInteractionWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml30

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml30 that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	XmlBinaryInteractionEvidenceWriter	Expanded XML 3.0 writer for a binary interaction evidence (with full experimental details).
class	XmlExperimentalParticipantCandidateWriter	Expanded XML 3.0 writer for a participant evidence with full experimental details
class	XmlInteractionEvidenceWriter	Expanded XML 3.0 writer for an interaction evidence (with full experimental details).
class	XmlModelledBinaryInteractionWriter	Expanded XML 3.0 writer for a modelled binary interaction (ignore experimental details).
class	XmlModelledInteractionWriter	Expanded XML 3.0 writer for a modelled interaction (ignore experimental details).
class	XmlModelledParticipantCandidateWriter	Expanded XML 3.0 writer for a participant evidence with full experimental details
class	XmlModelledParticipantWriter	Expanded XML 3.0 writer for a modelled participant.
class	XmlNamedBinaryInteractionEvidenceWriter	Expanded XML 3.0 writer for a named binary interaction evidence (with full experimental details).
class	XmlNamedInteractionEvidenceWriter	Expanded XML 3.0writer for a named interaction evidence (with full experimental details).
class	XmlNamedModelledBinaryInteractionWriter	Expanded XML 3.0 writer for a binary modelled interaction (ignore experimental details) which have a fullname and aliases in addition to the shortname.
class	XmlNamedModelledInteractionWriter	Expanded XML 3.0 writer for a modelled interaction (ignore experimental details) which have a fullname and aliases in addition to the shortname.
class	XmlNamedModelledParticipantWriter	Expanded XML 3.0 writer for a named modelled participant having a fullname and a shortname.
class	XmlNamedParticipantEvidenceWriter	Expanded Xml 3.0 writer for a named participant evidence with a shortname and a fullname.
class	XmlParticipantEvidenceWriter	Expanded XML 3.0 writer for a participant evidence with full experimental details

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml30 that return PsiXmlElementWriter

Modifier and Type	Method	Description
PsiXmlElementWriter<Alias>	XmlNamedBinaryInteractionEvidenceWriter.getAliasWriter()	Getter for the field aliasWriter.
PsiXmlElementWriter<Alias>	XmlNamedInteractionEvidenceWriter.getAliasWriter()	Getter for the field aliasWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml30 with parameters of type PsiXmlElementWriter

Modifier and Type	Method	Description
void	XmlNamedBinaryInteractionEvidenceWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	XmlNamedInteractionEvidenceWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	AbstractXmlInteractionEvidenceWriter<I extends InteractionEvidence>	Abstract class for interaction evidence writers that write expanded interactions (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.)
class	AbstractXmlModelledInteractionWriter<I extends ModelledInteraction>	Abstract class for XML writers of modelled interaction
class	XmlBeginPositionWriter	XML writer for the begin position of a range
class	XmlEndPositionWriter	XML writer for the end position of a range
class	XmlInferredInteractionWriter	XML writer for an expanded inferred interaction
class	XmlInteractorWriter	Xml interactor writer
class	XmlOrganismWriter	PSI-XML writer for organism

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended that return PsiXmlElementWriter

Modifier and Type	Method	Description
PsiXmlElementWriter<Alias>	AbstractXmlInteractionEvidenceWriter.getAliasWriter()	Getter for the field aliasWriter.
PsiXmlElementWriter<Annotation>	XmlDbXrefWriter.getAnnotationWriter()	Getter for the field annotationWriter.
PsiXmlElementWriter<AbstractInferredInteraction>	AbstractXmlInteractionEvidenceWriter.getXmlInferredInteractionWriter()	getXmlInferredInteractionWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended with parameters of type PsiXmlElementWriter

Modifier and Type	Method	Description
void	AbstractXmlInteractionEvidenceWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	XmlDbXrefWriter.setAnnotationWriter(PsiXmlElementWriter<Annotation> annotationWriter)	Setter for the field annotationWriter.
void	AbstractXmlInteractionEvidenceWriter.setXmlInferredInteractionWriter(PsiXmlElementWriter<AbstractInferredInteraction> inferredInteractionWriter)	setXmlInferredInteractionWriter.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	XmlExperimentalInteractorWriter	Compact XML writer of experimental interactors

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml25

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml25 that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	XmlBasicBinaryInteractionWriter	Compact XML 2.5 writer for a basic binary interaction (ignore experimental details) which has a fullname and aliases in addition to a shortname
class	XmlBasicInteractionWriter	Compact XML 2.5 writer for a basic interaction (ignore experimental details) which has a fullname and aliases in addition to a shortname
class	XmlBinaryInteractionEvidenceWriter	Compact XML 2.5 writer for an expanded binary interaction evidence (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.).
class	XmlComplexWriter	Compact XML 2.5 writer for an expanded biological complex (ignore experimental details).
class	XmlInteractionEvidenceWriter	Compact XML 2.5 writer for an expanded interaction evidence (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.).
class	XmlModelledBinaryInteractionWriter	Compact XML 2.5 writer for an expanded modelled binary interaction (ignore experimental details).
class	XmlModelledInteractionWriter	Compact XML 2.5 writer for an expanded modelled interaction (ignore experimental details).
class	XmlModelledParticipantWriter	Compact XML 2.5 writer for a modelled participant.
class	XmlParticipantEvidenceWriter	Compact XML 2.5 writer for an expanded participant evidence with full experimental details and having experimental interactors, list of host organisms and list of experimental roles.
class	XmlParticipantWriter	Compact XML 2.5 writer for a basic participant (ignore experimental details)

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml30

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml30 that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	XmlBinaryInteractionEvidenceWriter	Compact XML 3.0 writer for an expanded binary interaction evidence (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.).
class	XmlExperimentalParticipantCandidateWriter	Compact XML 3.0 writer for a participant evidence with full experimental details
class	XmlInteractionEvidenceWriter	Compact XML 3.0 writer for an expanded interaction evidence (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.).
class	XmlModelledBinaryInteractionWriter	Compact XML 3.0 writer for an expanded modelled binary interaction (ignore experimental details).
class	XmlModelledInteractionWriter	Compact XML 3.0 writer for an expanded modelled interaction (ignore experimental details).
class	XmlModelledParticipantCandidateWriter	Compact XML 3.0 writer for a participant evidence with full experimental details
class	XmlModelledParticipantWriter	Compact XML 3.0 writer for a modelled participant.
class	XmlParticipantEvidenceWriter	Compact XML 3.0 writer for an expanded participant evidence with full experimental details and having experimental interactors, list of host organisms and list of experimental roles.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	XmlExperimentalInteractorWriter	Expanded XML writer of experimental interactors

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded that return PsiXmlElementWriter

Modifier and Type	Method	Description
PsiXmlElementWriter<Interactor>	XmlExperimentalInteractorWriter.getInteractorWriter()	Getter for the field interactorWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded with parameters of type PsiXmlElementWriter

Modifier and Type	Method	Description
void	XmlExperimentalInteractorWriter.setInteractorWriter(PsiXmlElementWriter<Interactor> interactorWriter)	Setter for the field interactorWriter.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml25

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml25 that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	XmlBasicBinaryInteractionWriter	Expanded XML 2.5 writer for a basic binary interaction (ignore experimental details).
class	XmlBasicInteractionWriter	Expanded XML 2.5 writer for a basic interaction (ignore experimental details).
class	XmlBinaryInteractionEvidenceWriter	Expanded XML 2.5 writer for an expanded binary interaction evidence (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.).
class	XmlComplexWriter	Expanded XML 2.5 writer for an expanded biological complexes (ignore experimental details).
class	XmlInteractionEvidenceWriter	Expanded XML 2.5 writer for an expanded interaction evidence (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.).
class	XmlModelledBinaryInteractionWriter	Expanded XML 2.5 writer for an expanded modelled binary interaction (ignore experimental details).
class	XmlModelledInteractionWriter	Expanded XML 2.5 writer for an expanded modelled interaction (ignore experimental details).
class	XmlModelledParticipantWriter	Expanded XML 2.5 writer for a modelled participant.
class	XmlParticipantEvidenceWriter	Expanded XML 2.5 writer for an expanded participant evidence with full experimental details and having experimental interactors, list of host organisms and list of experimental roles.
class	XmlParticipantWriter	Compact XML 2.5 writer for a basic participant (ignore experimental details)

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml30

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml30 that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	XmlBinaryInteractionEvidenceWriter	Expanded XML 3.0 writer for an expanded binary interaction evidence (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.).
class	XmlExperimentalParticipantCandidateWriter	Expanded XML 3.0 writer for a participant evidence with full experimental details
class	XmlInteractionEvidenceWriter	Expanded XML 3.0 writer for an expanded interaction evidence (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.).
class	XmlModelledBinaryInteractionWriter	Expanded XML 3.0 writer for an expanded modelled binary interaction (ignore experimental details).
class	XmlModelledInteractionWriter	Expanded XML 3.0 writer for an expanded modelled interaction (ignore experimental details).
class	XmlModelledParticipantCandidateWriter	Expanded XML 3.0 writer for a participant evidence with full experimental details
class	XmlModelledParticipantWriter	Compact XML 3.0 writer for a modelled participant.
class	XmlParticipantEvidenceWriter	Expanded XML 3.0 writer for an expanded participant evidence with full experimental details and having experimental interactors, list of host organisms and list of experimental roles.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25 that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	AbstractXmlInteractionEvidenceWriter<I extends InteractionEvidence>	Abstract class for interaction evidence writers that write expanded interactions (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.)
class	AbstractXmlInteractionWriter<I extends Interaction>	Abstract class for extended XML 2.5 interaction writer
class	AbstractXmlModelledInteractionWriter<I extends ModelledInteraction>	Abstract class for XML 2.5 writers of modelled interaction
class	XmlExperimentWriter	XML 2.5 writer for expanded experiments having participant identification method, feature detection method and a list of host organisms
class	XmlFeatureEvidenceWriter	Writer for expanded feature evidence having experiment references
class	XmlFeatureWriter	XML 2.5 writer for a basic feature (ignore experimental details)
class	XmlModelledFeatureWriter	XML 2.5 writer for a modelled feature (ignore experimental details)
class	XmlPublicationWriter	Xml25 writer for publications (bibref objects)
class	XmlRangeWriter	Xml 2.5 writer for a feature range
class	XmlSourceWriter	XML 2.5 writer for expanded XML source having a release description and a release date

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25 that return PsiXmlElementWriter

Modifier and Type	Method	Description
PsiXmlElementWriter<Alias>	AbstractXmlInteractionWriter.getAliasWriter()	Getter for the field aliasWriter.
PsiXmlElementWriter<AbstractInferredInteraction>	AbstractXmlInteractionWriter.getXmlInferredInteractionWriter()	getXmlInferredInteractionWriter.
PsiXmlElementWriter<AbstractInferredInteraction>	AbstractXmlModelledInteractionWriter.getXmlInferredInteractionWriter()	getXmlInferredInteractionWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25 with parameters of type PsiXmlElementWriter

Modifier and Type	Method	Description
void	AbstractXmlInteractionWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	AbstractXmlInteractionWriter.setXmlInferredInteractionWriter(PsiXmlElementWriter<AbstractInferredInteraction> inferredInteractionWriter)	setXmlInferredInteractionWriter.
void	AbstractXmlModelledInteractionWriter.setXmlInferredInteractionWriter(PsiXmlElementWriter<AbstractInferredInteraction> inferredInteractionWriter)	setXmlInferredInteractionWriter.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml253

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml253 that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	XmlConfidenceWriter	Extended Xml25 writer for confidences.
class	XmlHostOrganismWriter	XML 2.5 writer for an expanded host organism having experiment references
class	XmlParameterWriter	XML 2.5 writer of a parameter

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml254

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml25.xml254 that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	XmlConfidenceWriter	Extended Xml25 writer for confidences.
class	XmlHostOrganismWriter	XML 2.5 writer for an expanded host organism having experiment references
class	XmlParameterWriter	XML 2.5 writer of a parameter

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30 that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	AbstractXmlInteractionEvidenceWriter<I extends InteractionEvidence>	Abstract class for interaction evidence writers that write expanded interactions (having modelled, intramolecular properties, list of experiments, list of interaction types, etc.)
class	AbstractXmlModelledInteractionWriter<I extends ModelledInteraction>	Abstract class for XML 3.0 writers of modelled interaction
class	XmlAllosteryWriter	Xml 3.0 writer for allostery
class	XmlConfidenceWriter	Extended Xml30 writer for confidences.
class	XmlCooperativityEvidenceWriter	Xml 3.0 writer for cooperativity evidence
class	XmlExperimentWriter	XML 3.0 writer for expanded experiments having participant identification method, feature detection method and a list of host organisms
class	XmlFeatureEvidenceWriter	Writer for expanded feature evidence having experiment references
class	XmlHostOrganismWriter	XML 3.0 writer for an expanded host organism having experiment references
class	XmlModelledConfidenceWriter	Xml30 writer for modelled confidences
class	XmlModelledFeatureWriter	XML 3.0 writer for a modelled feature (ignore experimental details)
class	XmlModelledParameterWriter	XML 3.0 writer of a modelled parameter
class	XmlParameterWriter	XML 3.0 writer of a parameter
class	XmlPreAssemblyWriter	Xml 3.0 writer for preassembly
class	XmlPublicationWriter	Xml30 writer for publications (bibref objects)
class	XmlRangeWriter	Xml 3.0 writer for a feature range
class	XmlResultingSequenceWriter	Xml 3.0 writer for resulting sequence
class	XmlSourceWriter	XML 3.0 writer for expanded XML source having a release description and a release date
class	XmlVariableParameterWriter	XML 3.0 writer for variable parameter

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30 that return PsiXmlElementWriter

Modifier and Type	Method	Description
PsiXmlElementWriter<Allostery>	AbstractXmlModelledInteractionWriter.getAllosteryWriter()	Getter for the field allosteryWriter.
PsiXmlElementWriter<Set<Feature>>	AbstractXmlModelledInteractionWriter.getBindingFeaturesWriter()	Getter for the field bindingFeaturesWriter.
PsiXmlElementWriter<Organism>	AbstractXmlModelledInteractionWriter.getOrganismWriter()	Getter for the field organismWriter.
PsiXmlElementWriter<Preassembly>	AbstractXmlModelledInteractionWriter.getPreAssemblyWriter()	Getter for the field preAssemblyWriter.
PsiXmlElementWriter<VariableParameterValueSet>	AbstractXmlInteractionEvidenceWriter.getVariableParameterValueSetWriter()	Getter for the field variableParameterValueSetWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.xml30 with parameters of type PsiXmlElementWriter

Modifier and Type	Method	Description
void	AbstractXmlModelledInteractionWriter.setAllosteryWriter(PsiXmlElementWriter<Allostery> allosteryWriter)	Setter for the field allosteryWriter.
void	AbstractXmlModelledInteractionWriter.setBindingFeaturesWriter(PsiXmlElementWriter<Set<Feature>> bindingFeaturesWriter)	Setter for the field bindingFeaturesWriter.
void	AbstractXmlModelledInteractionWriter.setOrganismWriter(PsiXmlElementWriter<Organism> organismWriter)	Setter for the field organismWriter.
void	AbstractXmlModelledInteractionWriter.setPreAssemblyWriter(PsiXmlElementWriter<Preassembly> preAssemblyWriter)	Setter for the field preAssemblyWriter.
void	AbstractXmlInteractionEvidenceWriter.setVariableParameterValueSetWriter(PsiXmlElementWriter<VariableParameterValueSet> variableParameterValueSetWriter)	Setter for the field variableParameterValueSetWriter.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml25

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml25 that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	XmlExperimentWriter	PSI-XML 2.5 experiment writer
class	XmlFeatureEvidenceWriter	XML 2.5 writer for a feature evidence (with feature detection method)
class	XmlFeatureWriter	XML 2.5 writer for a basic feature (ignore experimental details)
class	XmlModelledFeatureWriter	XML 2.5 writer for a modelled feature (ignore experimental details)
class	XmlNamedExperimentWriter	XML 2.5 experiment writer for a named experiment having shortlabel, fullname and aliases
class	XmlParameterWriter	XML 2.5 writer of a parameter
class	XmlPublicationWriter	Xml25 writer for publications (bibref objects)
class	XmlRangeWriter	Xml 2.5 writer for a feature range
class	XmlSourceWriter	Writer of a source in an 2.5 entry.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml25 that return PsiXmlElementWriter

Modifier and Type	Method	Description
PsiXmlElementWriter<Alias>	XmlNamedExperimentWriter.getAliasWriter()	Getter for the field aliasWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml25 with parameters of type PsiXmlElementWriter

Modifier and Type	Method	Description
void	XmlNamedExperimentWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30 that implement PsiXmlElementWriter

Modifier and Type	Class	Description
class	XmlAllosteryWriter	Xml 3.0 writer for allostery
class	XmlBindingFeaturesWriter	XML 3.0 writer for binding features
class	XmlCooperativityEvidenceWriter	Xml 3.0 writer for cooperativity evidence
class	XmlExperimentWriter	PSI-XML 3.0.0 experiment writer
class	XmlFeatureEvidenceWriter	XML 3.0 writer for a feature evidence (with feature detection method)
class	XmlModelledConfidenceWriter	Xml30 writer for modelled confidences
class	XmlModelledFeatureWriter	XML 3.0 writer for a modelled feature (ignore experimental details)
class	XmlModelledParameterWriter	XML 3.0 writer of a modelled parameter
class	XmlNamedExperimentWriter	XML 3.0 experiment writer for a named experiment having shortlabel, fullname and aliases
class	XmlParameterWriter	XML 3.0 writer of a parameter
class	XmlPreAssemblyWriter	Xml 3.0 writer for preassembly
class	XmlPublicationWriter	Xml30 writer for publications (bibref objects)
class	XmlRangeWriter	Xml 3.0 writer for a feature range
class	XmlResultingSequenceWriter	Xml 3.0 writer for resulting sequence
class	XmlSourceWriter	Writer of a source in a 3.0 entry.
class	XmlStoichiometryWriter	XML 3.0 writer for stoichiometry
class	XmlVariableParameterValueSetWriter	XML 3.0 writer for variable parameter value set
class	XmlVariableParameterValueWriter	XML 3.0 writer for variable parameter value
class	XmlVariableParameterWriter	XML 3.0 writer for variable parameter

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30 that return PsiXmlElementWriter

Modifier and Type	Method	Description
PsiXmlElementWriter<Alias>	XmlNamedExperimentWriter.getAliasWriter()	Getter for the field aliasWriter.
PsiXmlElementWriter<Publication>	XmlCooperativityEvidenceWriter.getPublicationWriter()	Getter for the field publicationWriter.
PsiXmlElementWriter<ResultingSequence>	XmlRangeWriter.getResultingSequenceWriter()	Getter for the field resultingSequenceWriter.
PsiXmlElementWriter<VariableParameterValue>	XmlVariableParameterWriter.getVariableParameterValueWriter()	Getter for the field variableParameterValueWriter.
PsiXmlElementWriter<VariableParameter>	XmlExperimentWriter.getVariableParameterWriter()	Getter for the field variableParameterWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30 with parameters of type PsiXmlElementWriter

Modifier and Type	Method	Description
void	XmlNamedExperimentWriter.setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
void	XmlCooperativityEvidenceWriter.setPublicationWriter(PsiXmlElementWriter<Publication> publicationWriter)	Setter for the field publicationWriter.
void	XmlRangeWriter.setResultingSequenceWriter(PsiXmlElementWriter<ResultingSequence> resultingSequenceWriter)	Setter for the field resultingSequenceWriter.
void	XmlVariableParameterWriter.setVariableParameterValueWriter(PsiXmlElementWriter<VariableParameterValue> variableParameterValueWriter)	Setter for the field variableParameterValueWriter.
void	XmlExperimentWriter.setVariableParameterWriter(PsiXmlElementWriter<VariableParameter> variableParameterWriter)	Setter for the field variableParameterWriter.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.io.writer.expanded

Methods in psidev.psi.mi.jami.xml.io.writer.expanded with parameters of type PsiXmlElementWriter

Modifier and Type	Method	Description
protected void	AbstractExpandedXmlWriter.initialiseOptionalWriters(PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlElementWriter<Interactor> interactorWriter)	initialiseOptionalWriters.

Uses of PsiXmlElementWriter in psidev.psi.mi.jami.xml.utils

Methods in psidev.psi.mi.jami.xml.utils with parameters of type PsiXmlElementWriter

Modifier and Type	Method	Description
static void	PsiXmlUtils.writeCompleteNamesElement(String shortLabel, String fullName, Collection<Alias> aliases, XMLStreamWriter writer, PsiXmlElementWriter<Alias> aliasWriter)	writeCompleteNamesElement.
static void	PsiXmlUtils.writeCompleteNamesForExperiment(NamedExperiment xmlExperiment, XMLStreamWriter writer, PsiXmlElementWriter<Alias> aliasWriter)	writeCompleteNamesForExperiment.