Uses of Class
psidev.psi.mi.jami.enricher.exception.EnricherException

Packages that use EnricherException

Package	Description
psidev.psi.mi.jami.enricher
psidev.psi.mi.jami.enricher.impl
psidev.psi.mi.jami.enricher.impl.full
psidev.psi.mi.jami.enricher.impl.minimal
psidev.psi.mi.jami.enricher.util
psidev.psi.mi.jami.imex
psidev.psi.mi.jami.imex.actions
psidev.psi.mi.jami.imex.actions.impl

Uses of EnricherException in psidev.psi.mi.jami.enricher

Methods in psidev.psi.mi.jami.enricher that throw EnricherException

Modifier and Type	Method	Description
void	MIEnricher.enrich(Collection<T> objects)	Enriche a collection of objects
void	MIEnricher.enrich(T object)	Enrich an object
void	MIEnricher.enrich(T objectToEnrich, T objectSource)	Enrich an object given a source object

Uses of EnricherException in psidev.psi.mi.jami.enricher.impl

Methods in psidev.psi.mi.jami.enricher.impl that throw EnricherException

Modifier and Type	Method	Description
protected boolean	AbstractInteractorEnricher.canEnrichInteractor(T objectToEnrich, T fetchedObject)	canEnrichInteractor.
protected boolean	AbstractInteractorUpdater.canEnrichInteractor(T entityToEnrich, T fetchedEntity)	canEnrichInteractor.
void	AbstractInteractorEnricher.enrich(T objectToEnrich, T fetchedObject)	enrich.
void	AbstractMIEnricher.enrich(Collection<T> objects)	enrich.
void	AbstractMIEnricher.enrich(T objectToEnrich)	enrich.
abstract void	AbstractMIEnricher.enrich(T objectToEnrich, T fetchedObject)	enrich.
void	CompositeEntityEnricher.enrich(Collection<Entity> objects)	enrich.
void	CompositeEntityEnricher.enrich(Entity object)	enrich.
void	CompositeEntityEnricher.enrich(Entity object, Entity objectSource)	enrich.
void	CompositeInteractorEnricher.enrich(Collection<Interactor> objects)	enrich.
void	CompositeInteractorEnricher.enrich(Interactor object)	enrich.
void	CompositeInteractorEnricher.enrich(Interactor object, Interactor objectSource)	enrich.
void	CompositeModelledParticipantEnricher.enrich(Collection<ModelledParticipant> objects)	enrich.
void	CompositeModelledParticipantEnricher.enrich(ModelledParticipant object)	enrich.
void	CompositeModelledParticipantEnricher.enrich(ModelledParticipant object, ModelledParticipant objectSource)	enrich.
void	CompositeParticipantEnricher.enrich(Collection<Participant> objects)	enrich.
void	CompositeParticipantEnricher.enrich(Participant object)	enrich.
void	CompositeParticipantEnricher.enrich(Participant object, Participant objectSource)	enrich.
void	CompositeParticipantEvidenceEnricher.enrich(Collection<ParticipantEvidence> objects)	enrich.
void	CompositeParticipantEvidenceEnricher.enrich(ParticipantEvidence object)	enrich.
void	CompositeParticipantEvidenceEnricher.enrich(ParticipantEvidence object, ParticipantEvidence objectSource)	enrich.
abstract T	AbstractInteractorEnricher.find(T objectToEnrich)	find.
T	AbstractInteractorUpdater.find(T objectToEnrich)	find.
abstract T	AbstractMIEnricher.find(T objectToEnrich)	find.
protected void	AbstractInteractorEnricher.onEnrichedVersionNotFound(T objectToEnrich)	onEnrichedVersionNotFound.
protected void	AbstractInteractorUpdater.onEnrichedVersionNotFound(T objectToEnrich)	onEnrichedVersionNotFound.
protected abstract void	AbstractMIEnricher.onEnrichedVersionNotFound(T objectToEnrich)	onEnrichedVersionNotFound.
protected abstract void	AbstractInteractorEnricher.onInteractorCheckFailure(T objectToEnrich, T fetchedObject)	onInteractorCheckFailure.
protected void	AbstractInteractorUpdater.onInteractorCheckFailure(T objectToEnrich, T fetchedObject)	onInteractorCheckFailure.
void	AbstractInteractorEnricher.processAliases(T bioactiveEntityToEnrich, T fetched)	processAliases.
void	AbstractInteractorUpdater.processAliases(T bioactiveEntityToEnrich, T fetched)	processAliases.
protected void	AbstractInteractorEnricher.processAnnotations(T objectToEnrich, T fetchedObject)	processAnnotations.
protected void	AbstractInteractorUpdater.processAnnotations(T objectToEnrich, T fetchedObject)	processAnnotations.
protected void	AbstractInteractorEnricher.processChecksums(T bioactiveEntityToEnrich, T fetched)	processChecksums.
protected void	AbstractInteractorUpdater.processChecksums(T bioactiveEntityToEnrich, T fetched)	processChecksums.
void	AbstractInteractorEnricher.processFullName(T bioactiveEntityToEnrich, T fetched)	processFullName.
void	AbstractInteractorUpdater.processFullName(T bioactiveEntityToEnrich, T fetched)	processFullName.
protected void	AbstractInteractorEnricher.processIdentifiers(T bioactiveEntityToEnrich, T fetched)	processIdentifiers.
protected void	AbstractInteractorUpdater.processIdentifiers(T bioactiveEntityToEnrich, T fetched)	processIdentifiers.
protected void	AbstractInteractorEnricher.processInteractorType(T entityToEnrich)	processInteractorType.
void	AbstractInteractorEnricher.processInteractorType(T entityToEnrich, T fetched)	processInteractorType.
void	AbstractInteractorUpdater.processInteractorType(T entityToEnrich, T fetched)	processInteractorType.
protected void	AbstractInteractorEnricher.processOrganism(T entityToEnrich)	processOrganism.
void	AbstractInteractorEnricher.processOrganism(T entityToEnrich, T fetched)	processOrganism.
void	AbstractInteractorUpdater.processOrganism(T entityToEnrich, T fetched)	processOrganism.
protected void	AbstractInteractorEnricher.processOtherProperties(T bioactiveEntityToEnrich, T fetched)	processOtherProperties.
protected void	AbstractInteractorEnricher.processShortLabel(T bioactiveEntityToEnrich, T fetched)	processShortLabel.
protected void	AbstractInteractorUpdater.processShortLabel(T bioactiveEntityToEnrich, T fetched)	processShortLabel.
protected void	AbstractInteractorEnricher.processXrefs(T bioactiveEntityToEnrich, T fetched)	processXrefs.
protected void	AbstractInteractorUpdater.processXrefs(T bioactiveEntityToEnrich, T fetched)	processXrefs.

Uses of EnricherException in psidev.psi.mi.jami.enricher.impl.full

Methods in psidev.psi.mi.jami.enricher.impl.full that throw EnricherException

Modifier and Type	Method	Description
void	FullFeatureEnricher.enrich(F objectToEnrich)	Enrichment of a single feature.
Publication	FullCuratedPublicationUpdater.find(Publication publicationToEnrich)	find.
C	FullCvTermUpdater.find(C cvTermToEnrich)	find.
Publication	FullPublicationUpdater.find(Publication publicationToEnrich)	find.
protected String	FullInteractionEnricher.generateRigid(I interactionToEnrich)	generateRigid.
protected void	FullParticipantEvidenceEnricher.mergeExperimentalPreparations(P termToEnrich, Collection<CvTerm> toEnrichTerms, Collection<CvTerm> fetchedTerms, boolean remove)	mergeExperimentalPreparations.
protected void	FullModelledInteractionEnricher.mergeInteractionEvidences(I interactionToEnrich, I objectSource, boolean remove)	mergeInteractionEvidences.
protected void	FullFeatureEnricher.mergeLinkedFeatures(F objectToEnrich, Collection<F> linkedFeaturesToEnrich, Collection<F> fetchedFeatures, boolean remove)	mergeLinkedFeatures.
protected void	FullFeatureEnricher.processAliases(F objectToEnrich, F termFetched)	processAliases.
protected void	FullOrganismEnricher.processAliases(Organism organismToEnrich, Organism organismFetched)	processAliases.
protected void	FullOrganismUpdater.processAliases(Organism organismToEnrich, Organism organismFetched)	processAliases.
protected void	FullParticipantEvidenceUpdater.processAliases(P objectToEnrich, P objectSource)	processAliases.
protected void	FullParticipantUpdater.processAliases(P objectToEnrich, P objectSource)	processAliases.
protected void	FullCvTermEnricher.processAnnotations(C cvTermToEnrich, C termFetched)	processAnnotations.
protected void	FullCvTermUpdater.processAnnotations(C cvTermToEnrich, C termFetched)	processAnnotations.
protected void	FullExperimentEnricher.processAnnotations(Experiment experimentToEnrich, Experiment objectSource)	processAnnotations.
protected void	FullExperimentUpdater.processAnnotations(Experiment experimentToEnrich, Experiment objectSource)	processAnnotations.
protected void	FullFeatureEnricher.processAnnotations(F objectToEnrich, F fetchedObject)	processAnnotations.
protected void	FullInteractionEnricher.processAnnotations(I objectToEnrich, I objectSource)	processAnnotations.
protected void	FullInteractionUpdater.processAnnotations(I objectToEnrich, I objectSource)	processAnnotations.
protected void	FullParticipantEnricher.processAnnotations(P objectToEnrich, P objectSource)	processAnnotations.
protected void	FullParticipantUpdater.processAnnotations(P objectToEnrich, P objectSource)	processAnnotations.
protected void	FullPublicationEnricher.processAnnotations(Publication publicationToEnrich, Publication fetched)	processAnnotations.
protected void	FullPublicationUpdater.processAnnotations(Publication publicationToEnrich, Publication fetched)	processAnnotations.
void	FullParticipantEvidenceUpdater.processBiologicalRole(P objectToEnrich, P objectSource)	processBiologicalRole.
void	FullParticipantUpdater.processBiologicalRole(P objectToEnrich, P objectSource)	processBiologicalRole.
protected void	FullEntityEnricher.processCausalRelationships(P objectToEnrich, P objectSource)	processCausalRelationships.
protected void	FullEntityUpdater.processCausalRelationships(P objectToEnrich, P objectSource)	processCausalRelationships.
protected void	FullParticipantEnricher.processCausalRelationships(P objectToEnrich, P objectSource)	processCausalRelationships.
protected void	FullParticipantUpdater.processCausalRelationships(P objectToEnrich, P objectSource)	processCausalRelationships.
protected void	FullOrganismEnricher.processCellType(Organism entityToEnrich, Organism fetched)	processCellType.
protected void	FullOrganismUpdater.processCellType(Organism entityToEnrich, Organism fetched)	processCellType.
protected void	FullInteractionEnricher.processChecksums(I objectToEnrich, I objectSource)	processChecksums.
protected void	FullInteractionUpdater.processChecksums(I objectToEnrich, I objectSource)	processChecksums.
protected void	FullOrganismEnricher.processCompartment(Organism entityToEnrich, Organism fetched)	processCompartment.
protected void	FullOrganismUpdater.processCompartment(Organism entityToEnrich, Organism fetched)	processCompartment.
protected void	FullExperimentEnricher.processConfidences(Experiment experimentToEnrich, Experiment objectSource)	processConfidences.
protected void	FullExperimentUpdater.processConfidences(Experiment experimentToEnrich, Experiment objectSource)	processConfidences.
protected void	FullInteractionEvidenceEnricher.processConfidences(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processConfidences.
protected void	FullInteractionEvidenceUpdater.processConfidences(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processConfidences.
protected void	FullParticipantEvidenceEnricher.processConfidences(P participantEvidenceToEnrich, P objectSource)	processConfidences.
protected void	FullParticipantEvidenceUpdater.processConfidences(P participantEvidenceToEnrich, P objectSource)	processConfidences.
protected void	FullCuratedPublicationEnricher.processCurationDepth(Publication publicationToEnrich, Publication fetched)	processCurationDepth.
protected void	FullCuratedPublicationUpdater.processCurationDepth(Publication publicationToEnrich, Publication fetched)	processCurationDepth.
protected void	FullPublicationEnricher.processCurationDepth(Publication publicationToEnrich, Publication fetched)	processCurationDepth.
void	FullCvTermEnricher.processCvTerm(C cvTermToEnrich, C termFetched)	A method that can be overridden to add to or change the behaviour of enrichment without effecting fetching.
protected void	FullModelledInteractionEnricher.processEvidenceType(I interactionToEnrich)	processEvidenceType.
protected void	FullModelledInteractionEnricher.processEvidenceType(I objectToEnrich, I objectSource)	processEvidenceType.
protected void	FullModelledInteractionUpdater.processEvidenceType(I objectToEnrich, I objectSource)	processEvidenceType.
void	FullExperimentUpdater.processExperiment(Experiment experimentToEnrich, Experiment objectSource)	processExperiment.
protected void	FullInteractionEvidenceUpdater.processExperiment(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processExperiment.
protected void	FullParticipantEvidenceEnricher.processExperimentalPreparations(P participantEvidenceToEnrich)	processExperimentalPreparations.
protected void	FullParticipantEvidenceEnricher.processExperimentalPreparations(P participantEvidenceToEnrich, P objectSource)	processExperimentalPreparations.
protected void	FullParticipantEvidenceUpdater.processExperimentalPreparations(P participantEvidenceToEnrich, P objectSource)	processExperimentalPreparations.
void	FullParticipantEvidenceUpdater.processExperimentalRole(P participantEvidenceToEnrich, P objectSource)	processExperimentalRole.
void	FullEntityUpdater.processFeatures(P objectToEnrich, P objectSource)	processFeatures.
void	FullParticipantEvidenceUpdater.processFeatures(P objectToEnrich, P objectSource)	processFeatures.
void	FullParticipantUpdater.processFeatures(P objectToEnrich, P objectSource)	processFeatures.
void	FullParticipantEvidenceUpdater.processIdentificationMethods(P participantEvidenceToEnrich, P objectSource)	processIdentificationMethods.
protected void	FullModelledInteractionEnricher.processInteractionEvidences(I objectToEnrich)	processInteractionEvidences.
protected void	FullModelledInteractionEnricher.processInteractionEvidences(I objectToEnrich, I objectSource)	processInteractionEvidences.
protected void	FullModelledInteractionUpdater.processInteractionEvidences(I objectToEnrich, I objectSource)	processInteractionEvidences.
void	FullEntityUpdater.processInteractor(P objectToEnrich, P objectSource)	processInteractor.
void	FullParticipantEvidenceUpdater.processInteractor(P objectToEnrich, P objectSource)	processInteractor.
void	FullParticipantUpdater.processInteractor(P objectToEnrich, P objectSource)	processInteractor.
protected void	FullPublicationEnricher.processJournal(Publication publicationToEnrich, Publication fetched)	processJournal.
protected void	FullPublicationUpdater.processJournal(Publication publicationToEnrich, Publication fetched)	processJournal.
protected void	FullFeatureEnricher.processLinkedFeatures(F featureToEnrich, F objectSource)	processLinkedFeatures.
protected void	FullFeatureUpdater.processLinkedFeatures(F featureToEnrich, F objectSource)	processLinkedFeatures.
protected void	FullInteractorPoolEnricher.processMembers(InteractorPool poolToEnrich, InteractorPool fetched)	processMembers.
protected void	FullInteractorPoolUpdater.processMembers(InteractorPool poolToEnrich, InteractorPool fetched)	processMembers.
protected void	FullCvTermEnricher.processMinimalUpdates(C cvTermToEnrich, C termFetched)	processMinimalUpdates.
protected void	FullCvTermUpdater.processMinimalUpdates(C cvTermToEnrich, C termFetched)	processMinimalUpdates.
void	FullFeatureEvidenceEnricher.processMinimalUpdates(FeatureEvidence objectToEnrich, FeatureEvidence objectSource)	processMinimalUpdates.
void	FullFeatureEvidenceUpdater.processMinimalUpdates(FeatureEvidence objectToEnrich, FeatureEvidence objectSource)	processMinimalUpdates.
void	FullInteractionUpdater.processMinimalUpdates(I objectToEnrich, I objectSource)	processMinimalUpdates.
protected void	FullComplexEnricher.processOtherProperties(Complex interactionToEnrich)	Strategy for the Interaction enrichment.
protected void	FullComplexEnricher.processOtherProperties(Complex objectToEnrich, Complex objectSource)	processOtherProperties.
protected void	FullComplexUpdater.processOtherProperties(Complex interactionToEnrich)	Strategy for the Interaction enrichment.
protected void	FullComplexUpdater.processOtherProperties(Complex objectToEnrich, Complex objectSource)	processOtherProperties.
protected void	FullCuratedPublicationEnricher.processOtherProperties(Publication publicationToEnrich, Publication fetched)	processOtherProperties.
void	FullEntityEnricher.processOtherProperties(P objectToEnrich, P objectSource)	processOtherProperties.
void	FullExperimentalParticipantPoolEnricher.processOtherProperties(ExperimentalParticipantPool objectToEnrich, ExperimentalParticipantPool objectSource)	processOtherProperties.
void	FullExperimentalParticipantPoolUpdater.processOtherProperties(ExperimentalParticipantPool objectToEnrich, ExperimentalParticipantPool objectSource)	processOtherProperties.
protected void	FullExperimentEnricher.processOtherProperties(Experiment experimentToEnrich)	processOtherProperties.
protected void	FullExperimentEnricher.processOtherProperties(Experiment experimentToEnrich, Experiment objectSource)	processOtherProperties.
protected void	FullFeatureEnricher.processOtherProperties(F featureToEnrich)	processOtherProperties.
protected void	FullFeatureEnricher.processOtherProperties(F featureToEnrich, F objectSource)	processOtherProperties.
protected void	FullFeatureEvidenceEnricher.processOtherProperties(FeatureEvidence featureToEnrich, FeatureEvidence objectSource)	processOtherProperties.
protected void	FullFeatureEvidenceUpdater.processOtherProperties(FeatureEvidence featureToEnrich, FeatureEvidence objectSource)	processOtherProperties.
protected void	FullInteractionEnricher.processOtherProperties(I interactionToEnrich)	The strategy used for enriching the interaction.
protected void	FullInteractionEnricher.processOtherProperties(I objectToEnrich, I objectSource)	processOtherProperties.
protected void	FullInteractionEvidenceEnricher.processOtherProperties(InteractionEvidence interactionToEnrich)	The strategy used for enriching the interaction.
protected void	FullInteractionEvidenceEnricher.processOtherProperties(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processOtherProperties.
protected void	FullInteractionEvidenceUpdater.processOtherProperties(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processOtherProperties.
protected void	FullInteractorPoolEnricher.processOtherProperties(InteractorPool poolToEnrich, InteractorPool fetched)	processOtherProperties.
protected void	FullInteractorPoolUpdater.processOtherProperties(InteractorPool poolToEnrich, InteractorPool fetched)	processOtherProperties.
protected void	FullModelledInteractionEnricher.processOtherProperties(I interactionToEnrich)	Strategy for the Interaction enrichment.
protected void	FullModelledInteractionEnricher.processOtherProperties(I objectToEnrich, I objectSource)	processOtherProperties.
protected void	FullOrganismEnricher.processOtherProperties(Organism organismToEnrich, Organism organismFetched)	processOtherProperties.
protected void	FullOrganismUpdater.processOtherProperties(Organism organismToEnrich, Organism organismFetched)	processOtherProperties.
void	FullParticipantEnricher.processOtherProperties(P objectToEnrich, P objectSource)	processOtherProperties.
void	FullParticipantEvidenceEnricher.processOtherProperties(P participantEvidenceToEnrich)	processOtherProperties.
void	FullParticipantEvidenceEnricher.processOtherProperties(P participantEvidenceToEnrich, P objectSource)	processOtherProperties.
void	FullParticipantPoolEnricher.processOtherProperties(P objectToEnrich, P objectSource)	processOtherProperties.
void	FullParticipantPoolUpdater.processOtherProperties(P objectToEnrich, P objectSource)	processOtherProperties.
protected void	FullPublicationEnricher.processOtherProperties(Publication publicationToEnrich, Publication fetched)	processOtherProperties.
protected void	FullFeatureEvidenceEnricher.processParameters(FeatureEvidence featureToEnrich, FeatureEvidence objectSource)	processParameters.
protected void	FullFeatureEvidenceUpdater.processParameters(FeatureEvidence featureToEnrich, FeatureEvidence objectSource)	processParameters.
protected void	FullInteractionEvidenceEnricher.processParameters(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processParameters.
protected void	FullInteractionEvidenceUpdater.processParameters(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processParameters.
protected void	FullParticipantEvidenceEnricher.processParameters(P participantEvidenceToEnrich, P objectSource)	processParameters.
protected void	FullParticipantEvidenceUpdater.processParameters(P participantEvidenceToEnrich, P objectSource)	processParameters.
protected void	FullExperimentalParticipantPoolEnricher.processParticipantCandidates(ExperimentalParticipantPool objectToEnrich, ExperimentalParticipantPool objectSource)	processParticipantCandidates.
protected void	FullExperimentalParticipantPoolUpdater.processParticipantCandidates(ExperimentalParticipantPool objectToEnrich, ExperimentalParticipantPool objectSource)	processParticipantCandidates.
protected void	FullParticipantPoolEnricher.processParticipantCandidates(P objectToEnrich, P objectSource)	processParticipantCandidates.
protected void	FullParticipantPoolUpdater.processParticipantCandidates(P objectToEnrich, P objectSource)	processParticipantCandidates.
void	FullCuratedPublicationUpdater.processPublication(Publication publicationToEnrich, Publication fetchedPublication)	The strategy for the enrichment of the publication.
void	FullPublicationUpdater.processPublication(Publication publicationToEnrich, Publication fetchedPublication)	The strategy for the enrichment of the publication.
protected void	FullPublicationEnricher.processPublicationTitle(Publication publicationToEnrich, Publication fetched)	processPublicationTitle.
protected void	FullPublicationUpdater.processPublicationTitle(Publication publicationToEnrich, Publication fetched)	processPublicationTitle.
protected void	FullCuratedPublicationEnricher.processReleasedDate(Publication publicationToEnrich, Publication fetched)	processReleasedDate.
protected void	FullCuratedPublicationUpdater.processReleasedDate(Publication publicationToEnrich, Publication fetched)	processReleasedDate.
protected void	FullPublicationEnricher.processReleasedDate(Publication publicationToEnrich, Publication fetched)	processReleasedDate.
protected void	FullInteractionEnricher.processRigid(I interactionToEnrich)	processRigid.
protected void	FullInteractionUpdater.processRigid(I interactionToEnrich)	processRigid.
protected void	FullFeatureEnricher.processRole(F featureToEnrich)	processRole.
protected void	FullFeatureEnricher.processRole(F featureToEnrich, F objectSource)	processRole.
protected void	FullFeatureUpdater.processRole(F featureToEnrich, F objectSource)	processRole.
protected void	FullModelledInteractionUpdater.processSource(I objectToEnrich, I objectSource)	processSource.
protected void	FullCvTermEnricher.processSynonyms(C cvTermToEnrich, C termFetched)	processSynonyms.
protected void	FullCvTermUpdater.processSynonyms(C cvTermToEnrich, C termFetched)	processSynonyms.
protected void	FullOrganismEnricher.processTissue(Organism entityToEnrich, Organism fetched)	processTissue.
protected void	FullOrganismUpdater.processTissue(Organism entityToEnrich, Organism fetched)	processTissue.
protected void	FullExperimentEnricher.processVariableParameters(Experiment experimentToEnrich, Experiment objectSource)	processVariableParameters.
protected void	FullExperimentUpdater.processVariableParameters(Experiment experimentToEnrich, Experiment objectSource)	processVariableParameters.
protected void	FullInteractionEvidenceEnricher.processVariableParameters(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processVariableParameters.
protected void	FullInteractionEvidenceUpdater.processVariableParameters(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processVariableParameters.
protected void	FullCvTermEnricher.processXrefs(C cvTermToEnrich, C cvTermFetched)	processXrefs.
protected void	FullCvTermUpdater.processXrefs(C cvTermToEnrich, C cvTermFetched)	processXrefs.
protected void	FullExperimentEnricher.processXrefs(Experiment experimentToEnrich, Experiment objectSource)	processXrefs.
protected void	FullExperimentUpdater.processXrefs(Experiment experimentToEnrich, Experiment objectSource)	processXrefs.
protected void	FullFeatureEnricher.processXrefs(F objectToEnrich, F cvTermFetched)	processXrefs.
protected void	FullInteractionEnricher.processXrefs(I objectToEnrich, I objectSource)	processXrefs.
protected void	FullInteractionUpdater.processXrefs(I objectToEnrich, I objectSource)	processXrefs.
protected void	FullParticipantEnricher.processXrefs(P objectToEnrich, P objectSource)	processXrefs.
protected void	FullParticipantEvidenceEnricher.processXrefs(P participantEvidenceToEnrich, P objectSource)	processXrefs.
protected void	FullParticipantEvidenceUpdater.processXrefs(P participantEvidenceToEnrich, P objectSource)	processXrefs.
protected void	FullParticipantUpdater.processXrefs(P objectToEnrich, P objectSource)	processXrefs.
protected void	FullPublicationEnricher.processXrefs(Publication publicationToEnrich, Publication fetched)	processXrefs.
protected void	FullPublicationUpdater.processXrefs(Publication publicationToEnrich, Publication fetched)	processXrefs.

Uses of EnricherException in psidev.psi.mi.jami.enricher.impl.minimal

Methods in psidev.psi.mi.jami.enricher.impl.minimal that throw EnricherException

Modifier and Type	Method	Description
protected boolean	MinimalBioactiveEntityEnricher.canEnrichInteractor(BioactiveEntity entityToEnrich, BioactiveEntity fetchedEntity)	canEnrichInteractor.
protected boolean	MinimalGeneEnricher.canEnrichInteractor(Gene entityToEnrich, Gene fetchedEntity)	canEnrichInteractor.
protected boolean	MinimalProteinEnricher.canEnrichInteractor(Protein entityToEnrich, Protein fetchedEntity)	canEnrichInteractor.
void	MinimalCuratedPublicationEnricher.enrich(Publication objectToEnrich, Publication fetchedObject)	enrich.
void	MinimalCvTermEnricher.enrich(C cvTermToEnrich, C cvTermFetched)	enrich.
void	MinimalEntityEnricher.enrich(Collection<P> participantsToEnrich)	enrich.
void	MinimalEntityEnricher.enrich(P participantToEnrich)	enrich.
void	MinimalEntityEnricher.enrich(P objectToEnrich, P objectSource)	enrich.
void	MinimalExperimentEnricher.enrich(Collection<Experiment> objects)	enrich.
void	MinimalExperimentEnricher.enrich(Experiment experimentToEnrich, Experiment objectSource)	enrich.
void	MinimalFeatureEnricher.enrich(F featureToEnrich)	Enrichment of a single feature.
void	MinimalFeatureEnricher.enrich(F objectToEnrich, F objectSource)	enrich.
void	MinimalFeatureEnricher.enrich(Collection<F> objects)	enrich.
void	MinimalInteractionEnricher.enrich(I interactionToEnrich)	Enrichment of a single interaction.
void	MinimalInteractionEnricher.enrich(I objectToEnrich, I objectSource)	enrich.
void	MinimalInteractionEnricher.enrich(Collection<I> objects)	enrich.
void	MinimalOntologyTermEnricher.enrich(OntologyTerm objectToEnrich)	enrich.
void	MinimalOntologyTermEnricher.enrich(OntologyTerm cvTermToEnrich, OntologyTerm cvTermFetched)	enrich.
void	MinimalOrganismEnricher.enrich(Organism organismToEnrich, Organism organismFetched)	enrich.
void	MinimalParticipantEnricher.enrich(Collection<P> participantsToEnrich)	enrich.
void	MinimalPublicationEnricher.enrich(Publication publicationToEnrich, Publication publicationFetched)	enrich.
void	MinimalSourceEnricher.enrich(Source cvTermToEnrich, Source cvTermFetched)	enrich.
protected void	MinimalOntologyTermEnricher.enrichChild(OntologyTerm objectToEnrich)	enrichChild.
protected void	MinimalOntologyTermEnricher.enrichRelatedTerms(Collection<OntologyTerm> cvTermToEnrich)	enrichRelatedTerms.
BioactiveEntity	MinimalBioactiveEntityEnricher.find(BioactiveEntity objectToEnrich)	find.
Publication	MinimalCuratedPublicationEnricher.find(Publication objectToEnrich)	find.
C	MinimalCvTermEnricher.find(C cvTermToEnrich)	find.
Experiment	MinimalExperimentEnricher.find(Experiment objectToEnrich)	find.
Gene	MinimalGeneEnricher.find(Gene geneToEnrich)	find.
T	MinimalInteractorBaseEnricher.find(T objectToEnrich)	find.
OntologyTerm	MinimalOntologyTermEnricher.find(OntologyTerm objectToEnrich)	find.
Organism	MinimalOrganismEnricher.find(Organism objectToEnrich)	find.
Protein	MinimalProteinEnricher.find(Protein proteinToEnrich)	find.
Protein	MinimalProteinUpdater.find(Protein objectToEnrich)	find.
Publication	MinimalPublicationEnricher.find(Publication publicationToEnrich)	find.
Source	MinimalSourceEnricher.find(Source objectToEnrich)	find.
protected void	MinimalFeatureEvidenceEnricher.mergeDetectionMethods(FeatureEvidence termToEnrich, Collection<CvTerm> toEnrichTerms, Collection<CvTerm> fetchedTerms, boolean remove)	Takes two lists of detection methods and produces a list of those to add and those to remove.
protected void	MinimalParticipantEvidenceEnricher.mergeIdentificationMethods(P termToEnrich, Collection<CvTerm> toEnrichTerms, Collection<CvTerm> fetchedTerms, boolean remove)	mergeIdentificationMethods.
protected void	MinimalOntologyTermEnricher.mergeOntologyTerms(OntologyTerm termToEnrich, Collection<OntologyTerm> toEnrichTerms, Collection<OntologyTerm> fetchedTerms, boolean remove)	Takes two lists of ontology terms and produces a list of those to add and those to remove.
protected void	MinimalBioactiveEntityEnricher.onEnrichedVersionNotFound(BioactiveEntity objectToEnrich)	onEnrichedVersionNotFound.
protected void	MinimalCuratedPublicationEnricher.onEnrichedVersionNotFound(Publication objectToEnrich)	onEnrichedVersionNotFound.
protected void	MinimalCvTermEnricher.onEnrichedVersionNotFound(C cvTermToEnrich)	onEnrichedVersionNotFound.
protected void	MinimalExperimentEnricher.onEnrichedVersionNotFound(Experiment experimentToEnrich)	onEnrichedVersionNotFound.
protected void	MinimalGeneEnricher.onEnrichedVersionNotFound(Gene objectToEnrich)	onEnrichedVersionNotFound.
protected void	MinimalOntologyTermEnricher.onEnrichedVersionNotFound(OntologyTerm cvTermToEnrich)	onEnrichedVersionNotFound.
protected void	MinimalOrganismEnricher.onEnrichedVersionNotFound(Organism objectToEnrich)	onEnrichedVersionNotFound.
protected void	MinimalProteinEnricher.onEnrichedVersionNotFound(Protein objectToEnrich)	onEnrichedVersionNotFound.
protected void	MinimalPublicationEnricher.onEnrichedVersionNotFound(Publication publicationToEnrich)	onEnrichedVersionNotFound.
protected void	MinimalSourceEnricher.onEnrichedVersionNotFound(Source objectToEnrich)	onEnrichedVersionNotFound.
protected void	MinimalBioactiveEntityEnricher.onInteractorCheckFailure(BioactiveEntity objectToEnrich, BioactiveEntity fetchedObject)	onInteractorCheckFailure.
protected void	MinimalGeneEnricher.onInteractorCheckFailure(Gene objectToEnrich, Gene fetchedObject)	onInteractorCheckFailure.
protected void	MinimalInteractorBaseEnricher.onInteractorCheckFailure(T objectToEnrich, T fetchedObject)	onInteractorCheckFailure.
protected void	MinimalProteinEnricher.onInteractorCheckFailure(Protein objectToEnrich, Protein fetchedObject)	onInteractorCheckFailure.
protected void	MinimalParticipantEnricher.processAliases(P objectToEnrich, P objectSource)	processAliases.
void	MinimalParticipantEvidenceUpdater.processAliases(P objectToEnrich, P objectSource)	processAliases.
protected void	MinimalParticipantUpdater.processAliases(P objectToEnrich, P objectSource)	processAliases.
protected void	MinimalPublicationEnricher.processAuthors(Publication publicationToEnrich, Publication fetched)	processAuthors.
protected void	MinimalPublicationUpdater.processAuthors(Publication publicationToEnrich, Publication fetched)	processAuthors.
protected void	MinimalParticipantEnricher.processBiologicalRole(P participantToEnrich)	processBiologicalRole.
void	MinimalParticipantEnricher.processBiologicalRole(P objectToEnrich, P objectSource)	processBiologicalRole.
void	MinimalParticipantEvidenceUpdater.processBiologicalRole(P objectToEnrich, P objectSource)	processBiologicalRole.
void	MinimalParticipantUpdater.processBiologicalRole(P objectToEnrich, P objectSource)	processBiologicalRole.
protected void	MinimalOntologyTermEnricher.processChildren(OntologyTerm cvTermToEnrich, OntologyTerm cvTermFetched)	processChildren.
protected void	MinimalOntologyTermUpdater.processChildren(OntologyTerm cvTermToEnrich, OntologyTerm cvTermFetched)	processChildren.
protected void	MinimalInteractionEnricher.processCreatedDate(I objectToEnrich, I objectSource)	processCreatedDate.
protected void	MinimalInteractionUpdater.processCreatedDate(I objectToEnrich, I objectSource)	processCreatedDate.
void	MinimalCvTermEnricher.processCvTerm(C cvTermToEnrich, C cvTermFetched)	A method that can be overridden to add to or change the behaviour of enrichment without effecting fetching.
void	MinimalCvTermUpdater.processCvTerm(C cvTermToEnrich, C cvTermFetched)	A method that can be overridden to add to or change the behaviour of enrichment without effecting fetching.
protected void	MinimalOntologyTermEnricher.processDefinition(OntologyTerm cvTermToEnrich, OntologyTerm cvTermFetched)	processDefinition.
protected void	MinimalOntologyTermUpdater.processDefinition(OntologyTerm cvTermToEnrich, OntologyTerm cvTermFetched)	processDefinition.
protected void	MinimalFeatureEvidenceEnricher.processDetectionMethods(FeatureEvidence featureToEnrich)	processDetectionMethods.
protected void	MinimalFeatureEvidenceEnricher.processDetectionMethods(FeatureEvidence featureToEnrich, FeatureEvidence source)	processDetectionMethods.
protected void	MinimalFeatureEvidenceUpdater.processDetectionMethods(FeatureEvidence featureToEnrich, FeatureEvidence source)	processDetectionMethods.
void	MinimalExperimentEnricher.processExperiment(Experiment experimentToEnrich)	processExperiment.
void	MinimalExperimentEnricher.processExperiment(Experiment experimentToEnrich, Experiment objectSource)	processExperiment.
protected void	MinimalInteractionEvidenceEnricher.processExperiment(InteractionEvidence interactionToEnrich)	processExperiment.
protected void	MinimalInteractionEvidenceEnricher.processExperiment(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processExperiment.
protected void	MinimalInteractionEvidenceUpdater.processExperiment(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processExperiment.
protected void	MinimalParticipantEvidenceEnricher.processExperimentalRole(P participantEvidenceToEnrich)	processExperimentalRole.
void	MinimalParticipantEvidenceEnricher.processExperimentalRole(P participantEvidenceToEnrich, P objectSource)	processExperimentalRole.
void	MinimalParticipantEvidenceUpdater.processExperimentalRole(P participantEvidenceToEnrich, P objectSource)	processExperimentalRole.
protected void	MinimalParticipantEvidenceEnricher.processExpressedInOrganism(P participantEvidenceToEnrich)	processExpressedInOrganism.
protected void	MinimalParticipantEvidenceEnricher.processExpressedInOrganism(P participantEvidenceToEnrich, P objectSource)	processExpressedInOrganism.
protected void	MinimalParticipantEvidenceUpdater.processExpressedInOrganism(P participantEvidenceToEnrich, P objectSource)	processExpressedInOrganism.
protected void	MinimalEntityEnricher.processFeatures(P participantToEnrich)	processFeatures.
void	MinimalEntityEnricher.processFeatures(P objectToEnrich, P objectSource)	processFeatures.
void	MinimalEntityUpdater.processFeatures(P objectToEnrich, P objectSource)	processFeatures.
void	MinimalParticipantEvidenceUpdater.processFeatures(P objectToEnrich, P objectSource)	processFeatures.
void	MinimalParticipantUpdater.processFeatures(P objectToEnrich, P objectSource)	processFeatures.
protected void	MinimalFeatureEnricher.processFeatureType(F featureToEnrich)	processFeatureType.
protected void	MinimalFeatureEnricher.processFeatureType(F featureToEnrich, F objectSource)	processFeatureType.
protected void	MinimalFeatureUpdater.processFeatureType(F featureToEnrich, F objectSource)	processFeatureType.
protected void	MinimalCvTermEnricher.processFullName(C cvTermToEnrich, C cvTermFetched)	processFullName.
protected void	MinimalCvTermUpdater.processFullName(C cvTermToEnrich, C cvTermFetched)	processFullName.
protected void	MinimalFeatureEnricher.processFullName(F objectToEnrich, F objectSource)	processFullName.
protected void	MinimalFeatureUpdater.processFullName(F objectToEnrich, F objectSource)	processFullName.
protected void	MinimalParticipantEvidenceEnricher.processIdentificationMethods(P participantEvidenceToEnrich)	processIdentificationMethods.
void	MinimalParticipantEvidenceEnricher.processIdentificationMethods(P participantEvidenceToEnrich, P objectSource)	processIdentificationMethods.
void	MinimalParticipantEvidenceUpdater.processIdentificationMethods(P participantEvidenceToEnrich, P objectSource)	processIdentificationMethods.
protected void	MinimalCvTermEnricher.processIdentifiers(C cvTermToEnrich, C cvTermFetched)	processIdentifiers.
protected void	MinimalCvTermUpdater.processIdentifiers(C cvTermToEnrich, C cvTermFetched)	processIdentifiers.
protected void	MinimalFeatureEnricher.processIdentifiers(F objectToEnrich, F objectSource)	processIdentifiers.
protected void	MinimalFeatureUpdater.processIdentifiers(F objectToEnrich, F objectSource)	processIdentifiers.
protected void	MinimalInteractionEnricher.processIdentifiers(I objectToEnrich, I objectSource)	processIdentifiers.
protected void	MinimalInteractionUpdater.processIdentifiers(I objectToEnrich, I objectSource)	processIdentifiers.
protected void	MinimalPublicationEnricher.processIdentifiers(Publication publicationToEnrich, Publication fetched)	processIdentifiers.
protected void	MinimalPublicationUpdater.processIdentifiers(Publication publicationToEnrich, Publication fetched)	processIdentifiers.
protected void	MinimalExperimentEnricher.processInteractionDetectionMethod(Experiment experimentToEnrich)	processInteractionDetectionMethod.
protected void	MinimalExperimentEnricher.processInteractionDetectionMethod(Experiment experimentToEnrich, Experiment objectSource)	processInteractionDetectionMethod.
protected void	MinimalExperimentUpdater.processInteractionDetectionMethod(Experiment experimentToEnrich, Experiment objectSource)	processInteractionDetectionMethod.
protected void	MinimalInteractionEnricher.processInteractionType(I interactionToEnrich)	processInteractionType.
protected void	MinimalInteractionEnricher.processInteractionType(I objectToEnrich, I objectSource)	processInteractionType.
protected void	MinimalInteractionUpdater.processInteractionType(I objectToEnrich, I objectSource)	processInteractionType.
protected void	MinimalEntityEnricher.processInteractor(P participantToEnrich)	processInteractor.
void	MinimalEntityEnricher.processInteractor(P objectToEnrich, P objectSource)	processInteractor.
void	MinimalEntityUpdater.processInteractor(P objectToEnrich, P objectSource)	processInteractor.
void	MinimalParticipantEnricher.processInteractor(P objectToEnrich, P objectSource)	processInteractor.
void	MinimalParticipantEvidenceUpdater.processInteractor(P objectToEnrich, P objectSource)	processInteractor.
void	MinimalParticipantUpdater.processInteractor(P objectToEnrich, P objectSource)	processInteractor.
void	MinimalFeatureEnricher.processMinimalUpdates(F featureToEnrich)	processMinimalUpdates.
void	MinimalFeatureEnricher.processMinimalUpdates(F objectToEnrich, F objectSource)	processMinimalUpdates.
void	MinimalInteractionEnricher.processMinimalUpdates(I objectToEnrich, I objectSource)	processMinimalUpdates.
void	MinimalInteractionEvidenceUpdater.processMinimalUpdates(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processMinimalUpdates.
void	MinimalModelledInteractionUpdater.processMinimalUpdates(I objectToEnrich, I objectSource)	processMinimalUpdates.
protected void	MinimalOntologyTermEnricher.processOntologyTerm(OntologyTerm cvTermToEnrich, OntologyTerm cvTermFetched)	A method that can be overridden to add to or change the behaviour of enrichment without effecting fetching.
protected void	MinimalExperimentEnricher.processOrganism(Experiment experimentToEnrich)	processOrganism.
protected void	MinimalExperimentEnricher.processOrganism(Experiment experimentToEnrich, Experiment objectSource)	processOrganism.
protected void	MinimalExperimentUpdater.processOrganism(Experiment experimentToEnrich, Experiment objectSource)	processOrganism.
protected void	MinimalComplexEnricher.processOtherProperties(Complex interactionToEnrich)	Strategy for the Interaction enrichment.
protected void	MinimalComplexEnricher.processOtherProperties(Complex objectToEnrich, Complex objectSource)	processOtherProperties.
protected void	MinimalComplexUpdater.processOtherProperties(Complex interactionToEnrich)	Strategy for the Interaction enrichment.
protected void	MinimalComplexUpdater.processOtherProperties(Complex objectToEnrich, Complex objectSource)	processOtherProperties.
protected void	MinimalCuratedPublicationEnricher.processOtherProperties(Publication publicationToEnrich, Publication fetchedPublication)	processOtherProperties.
void	MinimalEntityEnricher.processOtherProperties(P participantToEnrich)	processOtherProperties.
void	MinimalEntityEnricher.processOtherProperties(P objectToEnrich, P objectSource)	processOtherProperties.
void	MinimalExperimentalParticipantPoolEnricher.processOtherProperties(ExperimentalParticipantPool objectToEnrich, ExperimentalParticipantPool objectSource)	processOtherProperties.
void	MinimalExperimentalParticipantPoolUpdater.processOtherProperties(ExperimentalParticipantPool objectToEnrich, ExperimentalParticipantPool objectSource)	processOtherProperties.
protected void	MinimalExperimentEnricher.processOtherProperties(Experiment experimentToEnrich)	processOtherProperties.
protected void	MinimalExperimentEnricher.processOtherProperties(Experiment experimentToEnrich, Experiment objectSource)	processOtherProperties.
protected void	MinimalFeatureEnricher.processOtherProperties(F featureToEnrich)	processOtherProperties.
protected void	MinimalFeatureEnricher.processOtherProperties(F featureToEnrich, F objectSource)	processOtherProperties.
protected void	MinimalFeatureEvidenceEnricher.processOtherProperties(FeatureEvidence featureToEnrich)	processOtherProperties.
protected void	MinimalFeatureEvidenceEnricher.processOtherProperties(FeatureEvidence featureToEnrich, FeatureEvidence objectSource)	processOtherProperties.
protected void	MinimalInteractionEnricher.processOtherProperties(I interactionToEnrich)	The strategy used for enriching the interaction.
protected void	MinimalInteractionEnricher.processOtherProperties(I objectToEnrich, I objectSource)	processOtherProperties.
protected void	MinimalInteractionEvidenceEnricher.processOtherProperties(InteractionEvidence interactionToEnrich)	The strategy used for enriching the interaction.
protected void	MinimalInteractionEvidenceEnricher.processOtherProperties(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processOtherProperties.
protected void	MinimalInteractionEvidenceUpdater.processOtherProperties(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processOtherProperties.
protected void	MinimalInteractionUpdater.processOtherProperties(I objectToEnrich, I objectSource)	processOtherProperties.
protected void	MinimalModelledInteractionEnricher.processOtherProperties(I interactionToEnrich)	Strategy for the Interaction enrichment.
protected void	MinimalModelledInteractionEnricher.processOtherProperties(I objectToEnrich, I objectSource)	processOtherProperties.
protected void	MinimalOrganismEnricher.processOtherProperties(Organism organismToEnrich, Organism organismFetched)	processOtherProperties.
void	MinimalParticipantEnricher.processOtherProperties(P participantToEnrich)	processOtherProperties.
void	MinimalParticipantEnricher.processOtherProperties(P objectToEnrich, P objectSource)	processOtherProperties.
void	MinimalParticipantEvidenceEnricher.processOtherProperties(P participantEvidenceToEnrich)	processOtherProperties.
void	MinimalParticipantEvidenceEnricher.processOtherProperties(P participantEvidenceToEnrich, P objectSource)	processOtherProperties.
void	MinimalParticipantPoolEnricher.processOtherProperties(P objectToEnrich, P objectSource)	processOtherProperties.
void	MinimalParticipantPoolUpdater.processOtherProperties(P objectToEnrich, P objectSource)	processOtherProperties.
protected void	MinimalPublicationEnricher.processOtherProperties(Publication publicationToEnrich, Publication fetchedPublication)	processOtherProperties.
protected void	MinimalExperimentalParticipantPoolEnricher.processParticipantCandidates(ExperimentalParticipantPool objectToEnrich, ExperimentalParticipantPool objectSource)	processParticipantCandidates.
protected void	MinimalExperimentalParticipantPoolUpdater.processParticipantCandidates(ExperimentalParticipantPool objectToEnrich, ExperimentalParticipantPool objectSource)	processParticipantCandidates.
protected void	MinimalParticipantPoolEnricher.processParticipantCandidates(P objectToEnrich, P objectSource)	processParticipantCandidates.
protected void	MinimalParticipantPoolUpdater.processParticipantCandidates(P objectToEnrich, P objectSource)	processParticipantCandidates.
protected void	MinimalInteractionEnricher.processParticipants(I interactionToEnrich)	processParticipants.
protected void	MinimalInteractionEnricher.processParticipants(I objectToEnrich, I objectSource)	processParticipants.
protected void	MinimalInteractionUpdater.processParticipants(I objectToEnrich, I objectSource)	processParticipants.
void	MinimalCuratedPublicationEnricher.processPublication(Publication publicationToEnrich, Publication fetchedPublication)	The strategy for the enrichment of the publication.
protected void	MinimalExperimentEnricher.processPublication(Experiment experimentToEnrich)	processPublication.
protected void	MinimalExperimentEnricher.processPublication(Experiment experimentToEnrich, Experiment objectSource)	processPublication.
protected void	MinimalExperimentUpdater.processPublication(Experiment experimentToEnrich, Experiment objectSource)	processPublication.
void	MinimalPublicationEnricher.processPublication(Publication publicationToEnrich, Publication fetchedPublication)	The strategy for the enrichment of the publication.
protected void	MinimalSourceEnricher.processPublication(Source cvTermToEnrich, Source cvTermFetched)	processPublication.
protected void	MinimalSourceUpdater.processPublication(Source cvTermToEnrich, Source cvTermFetched)	processPublication.
protected void	MinimalPublicationEnricher.processPublicationDate(Publication publicationToEnrich, Publication fetched)	processPublicationDate.
protected void	MinimalPublicationUpdater.processPublicationDate(Publication publicationToEnrich, Publication fetched)	processPublicationDate.
protected void	MinimalFeatureEnricher.processRanges(F featureToEnrich)	processRanges.
protected void	MinimalFeatureEnricher.processRanges(F objectToEnrich, F objectSource)	processRanges.
protected void	MinimalFeatureUpdater.processRanges(F objectToEnrich, F objectSource)	processRanges.
protected void	MinimalFeatureEnricher.processRangeStatus(CvTerm status)	processRangeStatus.
protected void	MinimalCvTermUpdater.processShortabel(C cvTermToEnrich, C cvTermFetched)	processShortabel.
protected void	MinimalFeatureEnricher.processShortLabel(F objectToEnrich, F objectSource)	processShortLabel.
protected void	MinimalFeatureUpdater.processShortLabel(F objectToEnrich, F objectSource)	processShortLabel.
protected void	MinimalInteractionEnricher.processShortName(I objectToEnrich, I objectSource)	processShortName.
protected void	MinimalInteractionUpdater.processShortName(I objectToEnrich, I objectSource)	processShortName.
protected void	MinimalCuratedPublicationEnricher.processSource(Publication publicationToEnrich, Publication fetchedPublication)	processSource.
protected void	MinimalCuratedPublicationUpdater.processSource(Publication publicationToEnrich, Publication fetchedPublication)	processSource.
protected void	MinimalModelledInteractionEnricher.processSource(I interactionToEnrich)	processSource.
protected void	MinimalModelledInteractionEnricher.processSource(I objectToEnrich, I objectSource)	processSource.
protected void	MinimalModelledInteractionUpdater.processSource(I objectToEnrich, I objectSource)	processSource.
protected void	MinimalSourceEnricher.processSource(Source cvTermToEnrich, Source cvTermFetched)	A method that can be overridden to add to or change the behaviour of enrichment without effecting fetching.
protected void	MinimalOrganismEnricher.processTaxid(Organism organismToEnrich, Organism organismFetched)	processTaxid.
protected void	MinimalOrganismUpdater.processTaxid(Organism organismToEnrich, Organism organismFetched)	processTaxid.
protected void	MinimalInteractionEnricher.processUpdateDate(I objectToEnrich, I objectSource)	processUpdateDate.
protected void	MinimalInteractionUpdater.processUpdateDate(I objectToEnrich, I objectSource)	processUpdateDate.
protected boolean	MinimalProteinEnricher.remapProtein(Protein proteinToEnrich)	Attempts to remap the protein using the provided proteinRemapper.

Uses of EnricherException in psidev.psi.mi.jami.enricher.util

Methods in psidev.psi.mi.jami.enricher.util that throw EnricherException

Modifier and Type	Method	Description
static void	EnricherUtils.mergeCausalRelationships(Entity termToEnrich, Collection<CausalRelationship> toEnrichRelationships, Collection<CausalRelationship> fetchedRelationships, boolean remove, EntityChangeListener entityListener)	mergeCausalRelationships.
static <F extends Feature> void	EnricherUtils.mergeFeatures(Entity termToEnrich, Collection<F> toEnrichFeatures, Collection<F> fetchedFeatures, boolean remove, EntityChangeListener entityListener, FeatureEnricher<F> featureEnricher)	mergeFeatures.
static <P extends ParticipantCandidate> void	EnricherUtils.mergeParticipantCandidates(ParticipantPool termToEnrich, Collection<P> toEnrichParticipants, Collection<P> fetchedParticipants, boolean remove, ParticipantPoolChangeListener poolListener, EntityEnricher participantEnricher)	mergeParticipantCandidates.
static <P extends Participant> void	EnricherUtils.mergeParticipants(Interaction termToEnrich, Collection<P> toEnrichParticipants, Collection<P> fetchedParticipants, boolean remove, InteractionChangeListener interactionListener, ParticipantEnricher participantEnricher)	mergeParticipants.

Uses of EnricherException in psidev.psi.mi.jami.imex

Methods in psidev.psi.mi.jami.imex that throw EnricherException

Modifier and Type	Method	Description
ImexPublication	ImexPublicationAssigner.find(Publication publicationToEnrich)	find.
ImexPublication	ImexPublicationRegister.find(Publication publicationToEnrich)	find.
ImexPublication	ImexPublicationUpdater.find(Publication publicationToEnrich)	find.
protected boolean	ImexPublicationAssigner.isEntitledToAssignImexId(Publication publicationToEnrich, ImexPublication imexPublication)	isEntitledToAssignImexId.
protected void	ImexPublicationUpdater.onEnrichedVersionNotFound(Publication publicationToEnrich)	onEnrichedVersionNotFound.
protected void	ImexInteractionUpdater.processAnnotations(Interaction objectToEnrich, Interaction objectSource)	processAnnotations.
protected void	ImexInteractionUpdater.processChecksums(Interaction objectToEnrich, Interaction objectSource)	processChecksums.
protected void	ImexExperimentUpdater.processInteractionDetectionMethod(Experiment experimentToEnrich)	processInteractionDetectionMethod.
protected void	ImexExperimentUpdater.processInteractionDetectionMethod(Experiment experimentToEnrich, Experiment objectSource)	processInteractionDetectionMethod.
protected void	ImexInteractionUpdater.processInteractionType(Interaction interactionToEnrich)	processInteractionType.
protected void	ImexInteractionUpdater.processInteractionType(Interaction objectToEnrich, Interaction objectSource)	processInteractionType.
protected void	ImexExperimentUpdater.processOrganism(Experiment experimentToEnrich)	processOrganism.
protected void	ImexExperimentUpdater.processOrganism(Experiment experimentToEnrich, Experiment objectSource)	processOrganism.
protected void	ImexExperimentUpdater.processOtherProperties(Experiment experimentToEnrich)	processOtherProperties.
protected void	ImexInteractionUpdater.processOtherProperties(Interaction interactionToEnrich)	The strategy used for enriching the interaction.
protected void	ImexInteractionUpdater.processParticipants(Interaction interactionToEnrich)	processParticipants.
protected void	ImexInteractionUpdater.processParticipants(Interaction objectToEnrich, Interaction objectSource)	processParticipants.
protected void	ImexInteractionUpdater.processRigid(Interaction interactionToEnrich)	processRigid.
protected void	ImexInteractionUpdater.processXrefs(Interaction objectToEnrich, Interaction objectSource)	processXrefs.

Uses of EnricherException in psidev.psi.mi.jami.imex.actions

Methods in psidev.psi.mi.jami.imex.actions that throw EnricherException

Modifier and Type	Method	Description
void	PublicationIdentifierSynchronizer.synchronizePublicationIdentifier(Publication publication, Publication imexPublication)	Update the IMEx record in case intact publication has a valid pubmed, unassigned or doi identifier that is not in IMEx central.
boolean	ImexAssigner.updateImexIdentifierForExperiment(Experiment experiment, String imexId)	Add a IMEx primary reference to the experiment
boolean	ImexAssigner.updateImexIdentifierForInteraction(InteractionEvidence interaction, String imexId)	Add a IMEx primary reference to the interaction

Uses of EnricherException in psidev.psi.mi.jami.imex.actions.impl

Methods in psidev.psi.mi.jami.imex.actions.impl that throw EnricherException

Modifier and Type	Method	Description
void	PublicationIdentifierSynchronizerImpl.synchronizePublicationIdentifier(Publication publication, Publication imexPublication)	Update the IMEx record in case intact publication has a valid pubmed, unassigned or doi identifier that is not in IMEx central.
boolean	ImexAssignerImpl.updateImexIdentifierForExperiment(Experiment experiment, String imexId)	Add a IMEx primary reference to the experiment
boolean	ImexAssignerImpl.updateImexIdentifierForInteraction(InteractionEvidence interaction, String imexId)	Add a IMEx primary reference to the interaction