Uses of Interface
psidev.psi.mi.jami.model.Participant

Packages that use Participant

Package	Description
psidev.psi.mi.jami.binary
psidev.psi.mi.jami.binary.expansion
psidev.psi.mi.jami.binary.impl
psidev.psi.mi.jami.crosslink.extension
psidev.psi.mi.jami.crosslink.extension.datasource
psidev.psi.mi.jami.enricher
psidev.psi.mi.jami.enricher.impl
psidev.psi.mi.jami.enricher.impl.full
psidev.psi.mi.jami.enricher.impl.minimal
psidev.psi.mi.jami.enricher.listener
psidev.psi.mi.jami.enricher.listener.impl
psidev.psi.mi.jami.enricher.listener.impl.log
psidev.psi.mi.jami.enricher.listener.impl.writer
psidev.psi.mi.jami.enricher.util
psidev.psi.mi.jami.factory
psidev.psi.mi.jami.html
psidev.psi.mi.jami.json.elements
psidev.psi.mi.jami.json.nary
psidev.psi.mi.jami.listener
psidev.psi.mi.jami.listener.impl
psidev.psi.mi.jami.model
psidev.psi.mi.jami.model.impl
psidev.psi.mi.jami.tab.extension
psidev.psi.mi.jami.tab.extension.datasource
psidev.psi.mi.jami.tab.io.iterator
psidev.psi.mi.jami.tab.io.parser
psidev.psi.mi.jami.tab.io.writer
psidev.psi.mi.jami.tab.io.writer.feeder
psidev.psi.mi.jami.tab.io.writer.feeder.extended
psidev.psi.mi.jami.utils
psidev.psi.mi.jami.utils.clone
psidev.psi.mi.jami.utils.comparator.interaction
psidev.psi.mi.jami.utils.comparator.participant
psidev.psi.mi.jami.xml.io.parser
psidev.psi.mi.jami.xml.io.writer.elements
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30
psidev.psi.mi.jami.xml.model.extension
psidev.psi.mi.jami.xml.model.extension.binary
psidev.psi.mi.jami.xml.model.extension.datasource
psidev.psi.mi.jami.xml.model.extension.factory.xml25
psidev.psi.mi.jami.xml.model.extension.factory.xml30
psidev.psi.mi.jami.xml.model.extension.xml253
psidev.psi.mi.jami.xml.model.extension.xml254
psidev.psi.mi.jami.xml.model.extension.xml300
psidev.psi.mi.jami.xml.model.reference.xml253
psidev.psi.mi.jami.xml.model.reference.xml254
psidev.psi.mi.jami.xml.model.reference.xml300

Uses of Participant in psidev.psi.mi.jami.binary

Classes in psidev.psi.mi.jami.binary with type parameters of type Participant

Modifier and Type	Interface	Description
interface	BinaryInteraction<T extends Participant>	A Binary interaction is an interaction only composed of two participants.

Uses of Participant in psidev.psi.mi.jami.binary.expansion

Methods in psidev.psi.mi.jami.binary.expansion with type parameters of type Participant

Modifier and Type	Method	Description
protected abstract <P extends Participant> P	AbstractSpokeExpansion.collectBestBaitForSpokeExpansion(T interaction)	collectBestBaitForSpokeExpansion
protected abstract <P extends Participant> B	AbstractBipartiteExpansion.createBinaryInteraction(T interaction, P c1, P c2)	createBinaryInteraction
protected abstract <P extends Participant> B	AbstractMatrixExpansion.createBinaryInteraction(T interaction, P c1, P c2)	createBinaryInteraction
protected abstract <P extends Participant> B	AbstractSpokeExpansion.createBinaryInteraction(T interaction, P c1, P c2)	createBinaryInteraction
protected <P extends Participant> BinaryInteractionEvidence	InteractionEvidenceBipartiteExpansion.createBinaryInteraction(InteractionEvidence interaction, P c1, P c2)	createBinaryInteraction
protected <P extends Participant> BinaryInteractionEvidence	InteractionEvidenceMatrixExpansion.createBinaryInteraction(InteractionEvidence interaction, P c1, P c2)	createBinaryInteraction
protected <P extends Participant> BinaryInteractionEvidence	InteractionEvidenceSpokeExpansion.createBinaryInteraction(InteractionEvidence interaction, P c1, P c2)	createBinaryInteraction
protected <P extends Participant> BinaryInteraction	MatrixExpansion.createBinaryInteraction(Interaction interaction, P c1, P c2)	createBinaryInteraction
protected <P extends Participant> ModelledBinaryInteraction	ModelledInteractionBipartiteExpansion.createBinaryInteraction(ModelledInteraction interaction, P p1, P p2)	createBinaryInteraction
protected <P extends Participant> ModelledBinaryInteraction	ModelledInteractionMatrixExpansion.createBinaryInteraction(ModelledInteraction interaction, P p1, P p2)	createBinaryInteraction
protected <P extends Participant> ModelledBinaryInteraction	ModelledInteractionSpokeExpansion.createBinaryInteraction(ModelledInteraction interaction, P p1, P p2)	createBinaryInteraction
protected abstract <P extends Participant> P	AbstractBipartiteExpansion.createParticipantForComplexEntity(Complex complexEntity)	createParticipantForComplexEntity
protected abstract <P extends Participant> P[]	AbstractMatrixExpansion.createParticipantsArray(T interaction)	createParticipantsArray

Methods in psidev.psi.mi.jami.binary.expansion that return Participant

Modifier and Type	Method	Description
protected Participant	SpokeExpansion.collectBestBaitForSpokeExpansion(Interaction interaction)	collectBestBaitForSpokeExpansion
protected Participant	BipartiteExpansion.createParticipantForComplexEntity(Complex complexEntity)	createParticipantForComplexEntity
protected abstract <P extends Participant> P[]	AbstractMatrixExpansion.createParticipantsArray(T interaction)	createParticipantsArray
protected Participant[]	MatrixExpansion.createParticipantsArray(Interaction interaction)	createParticipantsArray

Methods in psidev.psi.mi.jami.binary.expansion with parameters of type Participant

Modifier and Type	Method	Description
protected BinaryInteraction	BipartiteExpansion.createBinaryInteraction(Interaction interaction, Participant c1, Participant c2)	createBinaryInteraction
protected BinaryInteraction	SpokeExpansion.createBinaryInteraction(Interaction interaction, Participant c1, Participant c2)	createBinaryInteraction

Uses of Participant in psidev.psi.mi.jami.binary.impl

Classes in psidev.psi.mi.jami.binary.impl with type parameters of type Participant

Modifier and Type	Class	Description
class	AbstractBinaryInteraction<T extends Participant>	Abstract class for BinaryInteraction.
class	AbstractBinaryInteractionWrapper<I extends Interaction<T>,T extends Participant>	Abstract class for binary interactions that wrap an Interaction.

Constructors in psidev.psi.mi.jami.binary.impl with parameters of type Participant

Constructor	Description
DefaultBinaryInteraction(String shortName, CvTerm type, Participant participantA, Participant participantB)	Constructor for DefaultBinaryInteraction.
DefaultBinaryInteraction(String shortName, CvTerm type, Participant participantA, Participant participantB, CvTerm complexExpansion)	Constructor for DefaultBinaryInteraction.
DefaultBinaryInteraction(String shortName, Participant participantA, Participant participantB)	Constructor for DefaultBinaryInteraction.
DefaultBinaryInteraction(String shortName, Participant participantA, Participant participantB, CvTerm complexExpansion)	Constructor for DefaultBinaryInteraction.
DefaultBinaryInteraction(Participant participantA, Participant participantB)	Constructor for DefaultBinaryInteraction.
DefaultBinaryInteraction(Participant participantA, Participant participantB, CvTerm complexExpansion)	Constructor for DefaultBinaryInteraction.
DefaultNamedBinaryInteraction(String shortName, CvTerm type, Participant participantA, Participant participantB)	Constructor for DefaultNamedBinaryInteraction.
DefaultNamedBinaryInteraction(String shortName, CvTerm type, Participant participantA, Participant participantB, CvTerm complexExpansion)	Constructor for DefaultNamedBinaryInteraction.
DefaultNamedBinaryInteraction(String shortName, Participant participantA, Participant participantB)	Constructor for DefaultNamedBinaryInteraction.
DefaultNamedBinaryInteraction(String shortName, Participant participantA, Participant participantB, CvTerm complexExpansion)	Constructor for DefaultNamedBinaryInteraction.
DefaultNamedBinaryInteraction(Participant participantA, Participant participantB)	Constructor for DefaultNamedBinaryInteraction.
DefaultNamedBinaryInteraction(Participant participantA, Participant participantB, CvTerm complexExpansion)	Constructor for DefaultNamedBinaryInteraction.

Uses of Participant in psidev.psi.mi.jami.crosslink.extension

Classes in psidev.psi.mi.jami.crosslink.extension that implement Participant

Modifier and Type	Class	Description
class	CsvExperimentalParticipantPool	Crosslink CSV extension of ParticipantEvidencePool.
class	CsvParticipantEvidence	Crosslink CSV extension of ParticipantEvidence.

Constructors in psidev.psi.mi.jami.crosslink.extension with parameters of type Participant

Constructor	Description
CsvRange(Position start, Position end, boolean isLink, Participant participant)	Constructor for CsvRange.
CsvRange(Position start, Position end, Participant participant)	Constructor for CsvRange.

Uses of Participant in psidev.psi.mi.jami.crosslink.extension.datasource

Methods in psidev.psi.mi.jami.crosslink.extension.datasource with parameters of type Participant

Modifier and Type	Method	Description
void	AbstractCsvSource.onParticipantWithoutInteractor(Participant participant, FileSourceContext context)	Listen to en event fired when a Participant is read and no interactor details has been provided.
void	AbstractCsvStreamSource.onParticipantWithoutInteractor(Participant participant, FileSourceContext context)	Listen to en event fired when a Participant is read and no interactor details has been provided.
void	CsvMixedEvidenceSource.onParticipantWithoutInteractor(Participant participant, FileSourceContext context)	Listen to en event fired when a Participant is read and no interactor details has been provided.
void	CsvNaryEvidenceSource.onParticipantWithoutInteractor(Participant participant, FileSourceContext context)	Listen to en event fired when a Participant is read and no interactor details has been provided.

Uses of Participant in psidev.psi.mi.jami.enricher

Classes in psidev.psi.mi.jami.enricher with type parameters of type Participant

Modifier and Type	Interface	Description
interface	ParticipantEnricher<P extends Participant,F extends Feature>	Sub enrichers: Protein, CvTerm, Feature, Bioactive3Entity

Uses of Participant in psidev.psi.mi.jami.enricher.impl

Methods in psidev.psi.mi.jami.enricher.impl that return types with arguments of type Participant

Modifier and Type	Method	Description
ParticipantEnricher<Participant,Feature>	CompositeParticipantEnricher.getEntityBaseEnricher()	Getter for the field entityBaseEnricher.

Methods in psidev.psi.mi.jami.enricher.impl with parameters of type Participant

Modifier and Type	Method	Description
void	CompositeParticipantEnricher.enrich(Participant object)	enrich.
void	CompositeParticipantEnricher.enrich(Participant object, Participant objectSource)	enrich.

Method parameters in psidev.psi.mi.jami.enricher.impl with type arguments of type Participant

Modifier and Type	Method	Description
void	CompositeParticipantEnricher.enrich(Collection<Participant> objects)	enrich.

Constructor parameters in psidev.psi.mi.jami.enricher.impl with type arguments of type Participant

Constructor	Description
CompositeParticipantEnricher(ParticipantEnricher<Participant,Feature> entityBaseEnricher)	Constructor for CompositeParticipantEnricher.

Uses of Participant in psidev.psi.mi.jami.enricher.impl.full

Classes in psidev.psi.mi.jami.enricher.impl.full with type parameters of type Participant

Modifier and Type	Class	Description
class	FullParticipantEnricher<P extends Participant,F extends Feature>	The participant enricher is an enricher which can enrich either single participant or a collection.
class	FullParticipantUpdater<P extends Participant,F extends Feature>	The participant enricher is an enricher which can enrich either single participant or a collection.

Uses of Participant in psidev.psi.mi.jami.enricher.impl.minimal

Classes in psidev.psi.mi.jami.enricher.impl.minimal with type parameters of type Participant

Modifier and Type	Class	Description
class	MinimalParticipantEnricher<P extends Participant,F extends Feature>	The participant enricher is an enricher which can enrich either single participant or a collection.
class	MinimalParticipantUpdater<P extends Participant,F extends Feature>	The participant enricher is an enricher which can enrich either single participant or a collection.

Uses of Participant in psidev.psi.mi.jami.enricher.listener

Classes in psidev.psi.mi.jami.enricher.listener with type parameters of type Participant

Modifier and Type	Interface	Description
interface	ParticipantEnricherListener<P extends Participant>	Created with IntelliJ IDEA.

Uses of Participant in psidev.psi.mi.jami.enricher.listener.impl

Classes in psidev.psi.mi.jami.enricher.listener.impl with type parameters of type Participant

Modifier and Type	Class	Description
class	ParticipantEnricherListenerManager<P extends Participant>	A manager for listeners which holds a list of listeners.

Methods in psidev.psi.mi.jami.enricher.listener.impl with parameters of type Participant

Modifier and Type	Method	Description
void	InteractionEnricherListenerManager.onAddedParticipant(I interaction, Participant addedParticipant)	onAddedParticipant
void	InteractionEnricherListenerManager.onRemovedParticipant(I interaction, Participant removedParticipant)	onRemovedParticipant

Uses of Participant in psidev.psi.mi.jami.enricher.listener.impl.log

Classes in psidev.psi.mi.jami.enricher.listener.impl.log with type parameters of type Participant

Modifier and Type	Class	Description
class	ParticipantEnricherLogger<P extends Participant>	A logging listener.

Uses of Participant in psidev.psi.mi.jami.enricher.listener.impl.writer

Classes in psidev.psi.mi.jami.enricher.listener.impl.writer with type parameters of type Participant

Modifier and Type	Class	Description
class	ParticipantEnricherStatisticsWriter<P extends Participant>	A statistics logger which records changes made by the enricher.

Methods in psidev.psi.mi.jami.enricher.listener.impl.writer with parameters of type Participant

Modifier and Type	Method	Description
void	InteractionEnricherStatisticsWriter.onAddedParticipant(I interaction, Participant addedParticipant)	onAddedParticipant
void	InteractionEnricherStatisticsWriter.onRemovedParticipant(I interaction, Participant removedParticipant)	onRemovedParticipant

Uses of Participant in psidev.psi.mi.jami.enricher.util

Methods in psidev.psi.mi.jami.enricher.util with type parameters of type Participant

Modifier and Type	Method	Description
static <P extends Participant> void	EnricherUtils.mergeParticipants(Interaction termToEnrich, Collection<P> toEnrichParticipants, Collection<P> fetchedParticipants, boolean remove, InteractionChangeListener interactionListener, ParticipantEnricher participantEnricher)	mergeParticipants.

Uses of Participant in psidev.psi.mi.jami.factory

Methods in psidev.psi.mi.jami.factory with parameters of type Participant

Modifier and Type	Method	Description
BinaryInteraction	BinaryInteractionFactory.createBasicBinaryInteractionFrom(Interaction interaction, Participant p1, Participant p2, CvTerm expansionMethod)	Create a new BinaryInteraction object from an Interaction parent and two participants
BinaryInteraction	DefaultBinaryInteractionFactory.createBasicBinaryInteractionFrom(Interaction interaction, Participant p1, Participant p2, CvTerm expansionMethod)	Create a new BinaryInteraction object from an Interaction parent and two participants

Uses of Participant in psidev.psi.mi.jami.html

Classes in psidev.psi.mi.jami.html with type parameters of type Participant

Modifier and Type	Class	Description
class	AbstractMIHtmlWriter<T extends Interaction,P extends Participant,F extends Feature>	Abstract class for MI HTML writer

Methods in psidev.psi.mi.jami.html with parameters of type Participant

Modifier and Type	Method	Description
protected void	LightMIHtmlWriter.writeConfidences(Participant participant)	writeConfidences
protected void	MIHtmlWriter.writeConfidences(Participant participant)	writeConfidences
protected void	LightMIHtmlWriter.writeExperimentalPreparations(Participant participant)	writeExperimentalPreparations
protected void	MIHtmlWriter.writeExperimentalPreparations(Participant participant)	writeExperimentalPreparations
protected void	LightMIHtmlWriter.writeExperimentalRole(Participant participant)	writeExperimentalRole
protected void	MIHtmlWriter.writeExperimentalRole(Participant participant)	writeExperimentalRole
protected void	LightMIHtmlWriter.writeExpressedInOrganism(Participant participant)	writeExpressedInOrganism
protected void	MIHtmlWriter.writeExpressedInOrganism(Participant participant)	writeExpressedInOrganism
protected void	LightMIHtmlWriter.writeParameters(Participant participant)	writeParameters
protected void	MIHtmlWriter.writeParameters(Participant participant)	writeParameters
protected void	LightMIHtmlWriter.writeParticipantIdentificationMethods(Participant participant)	writeParticipantIdentificationMethods
protected void	MIHtmlWriter.writeParticipantIdentificationMethods(Participant participant)	writeParticipantIdentificationMethods

Uses of Participant in psidev.psi.mi.jami.json.elements

Classes in psidev.psi.mi.jami.json.elements with type parameters of type Participant

Modifier and Type	Class	Description
class	SimpleJsonParticipantWriter<P extends Participant>	Json writer for participants

Uses of Participant in psidev.psi.mi.jami.json.nary

Methods in psidev.psi.mi.jami.json.nary with parameters of type Participant

Modifier and Type	Method	Description
protected void	AbstractMIJsonWriter.registerAndWriteInteractor(Participant participant)	registerAndWriteInteractor.

Uses of Participant in psidev.psi.mi.jami.listener

Classes in psidev.psi.mi.jami.listener with type parameters of type Participant

Modifier and Type	Interface	Description
interface	ParticipantChangeListener<F extends Participant>	Listener for changes in a participant

Methods in psidev.psi.mi.jami.listener with parameters of type Participant

Modifier and Type	Method	Description
void	InteractionChangeListener.onAddedParticipant(I interaction, Participant addedParticipant)	onAddedParticipant
void	MIFileParserListener.onParticipantWithoutInteractor(Participant participant, FileSourceContext context)	Listen to en event fired when a Participant is read and no interactor details has been provided.
void	InteractionChangeListener.onRemovedParticipant(I interaction, Participant removedParticipant)	onRemovedParticipant

Uses of Participant in psidev.psi.mi.jami.listener.impl

Classes in psidev.psi.mi.jami.listener.impl with type parameters of type Participant

Modifier and Type	Class	Description
class	ParticipantChangeLogger<T extends Participant>	This listener will just interactor change events

Methods in psidev.psi.mi.jami.listener.impl with parameters of type Participant

Modifier and Type	Method	Description
void	ComplexChangeLogger.onAddedParticipant(Complex interaction, Participant addedParticipant)	onAddedParticipant
void	InteractionChangeLogger.onAddedParticipant(T interaction, Participant addedParticipant)	onAddedParticipant
void	MIFileParserCompositeListener.onParticipantWithoutInteractor(Participant participant, FileSourceContext context)	Listen to en event fired when a Participant is read and no interactor details has been provided.
void	MIFileParserLogger.onParticipantWithoutInteractor(Participant participant, FileSourceContext context)	Listen to en event fired when a Participant is read and no interactor details has been provided.
void	ComplexChangeLogger.onRemovedParticipant(Complex interaction, Participant removedParticipant)	onRemovedParticipant
void	InteractionChangeLogger.onRemovedParticipant(T interaction, Participant removedParticipant)	onRemovedParticipant

Uses of Participant in psidev.psi.mi.jami.model

Classes in psidev.psi.mi.jami.model with type parameters of type Participant

Modifier and Type	Interface	Description
interface	Interaction<T extends Participant>	Interaction involving one to several molecules.
interface	NamedInteraction<T extends Participant>	A named interaction is an interaction having a fullname and aliases in addition to a shortname.

Subinterfaces of Participant in psidev.psi.mi.jami.model

Modifier and Type	Interface	Description
interface	ExperimentalParticipantPool	A pool of experimental participants
interface	ModelledParticipant	Participant of a modelled interaction.
interface	ModelledParticipantPool	A pool of modelled participant candidates
interface	NamedParticipant<I extends Interaction,F extends Feature>	A named entity is an entity having a short name and a fullname in addition to aliases.
interface	ParticipantEvidence	Participant of an interaction which is supported by experimental evidences
interface	ParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>	A pool of participants that can be grouped together as a single participant as they are interchangeable

Uses of Participant in psidev.psi.mi.jami.model.impl

Classes in psidev.psi.mi.jami.model.impl with type parameters of type Participant

Modifier and Type	Class	Description
class	AbstractInteraction<T extends Participant>	Abstract class for interactions

Classes in psidev.psi.mi.jami.model.impl that implement Participant

Modifier and Type	Class	Description
class	AbstractParticipant<I extends Interaction,F extends Feature>	Abstract class for Participant
class	AbstractParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>	Abstract class for Participant pool
class	DefaultExperimentalParticipantPool	Default implementation of ExperimentalParticipantPool
class	DefaultModelledParticipant	Default implementation for ModelledParticipant Notes: The equals and hashcode methods have NOT been overridden because the ModelledParticipant object is a complex object.
class	DefaultModelledParticipantPool	Default implementation of ParticipantPool
class	DefaultNamedModelledParticipant	Default implementation of Named modelled participant
class	DefaultNamedParticipant	Default implementation of named participant.
class	DefaultNamedParticipantEvidence	Default implementation of named participant evidence
class	DefaultParticipant	Default implementation for participant Notes: The equals and hashcode methods have NOT been overridden because the participant object is a complex object.
class	DefaultParticipantEvidence	Default implementation for ParticipantEvidence Notes: The equals and hashcode methods have NOT been overridden because the ParticipantEvidence object is a complex object.
class	DefaultParticipantPool	Default implementation of ParticipantPool

Constructors in psidev.psi.mi.jami.model.impl with parameters of type Participant

Constructor	Description
DefaultCausalRelationship(CvTerm relationType, Participant target)	Constructor for DefaultCausalRelationship.
DefaultRange(Position start, Position end, boolean isLink, Participant participant)	Constructor for DefaultRange.
DefaultRange(Position start, Position end, Participant participant)	Constructor for DefaultRange.

Uses of Participant in psidev.psi.mi.jami.tab.extension

Classes in psidev.psi.mi.jami.tab.extension that implement Participant

Modifier and Type	Class	Description
class	MitabModelledParticipant	Mitab extension for ModelledParticipant It contains a FileSourceLocator
class	MitabParticipant	Mitab extension for Participant.
class	MitabParticipantEvidence	Mitab extension of ParticipantEvidence.

Constructors in psidev.psi.mi.jami.tab.extension with parameters of type Participant

Constructor	Description
MitabBinaryInteraction(String shortName, CvTerm type, Participant participantA, Participant participantB)	Constructor for MitabBinaryInteraction.
MitabBinaryInteraction(String shortName, CvTerm type, Participant participantA, Participant participantB, CvTerm complexExpansion)	Constructor for MitabBinaryInteraction.
MitabBinaryInteraction(String shortName, Participant participantA, Participant participantB)	Constructor for MitabBinaryInteraction.
MitabBinaryInteraction(String shortName, Participant participantA, Participant participantB, CvTerm complexExpansion)	Constructor for MitabBinaryInteraction.
MitabBinaryInteraction(Participant participantA, Participant participantB)	Constructor for MitabBinaryInteraction.
MitabBinaryInteraction(Participant participantA, Participant participantB, CvTerm complexExpansion)	Constructor for MitabBinaryInteraction.
MitabCausalRelationship(CvTerm relationType, Participant target)	Constructor for MitabCausalRelationship.
MitabRange(Position start, Position end, boolean isLink, Participant participant)	Constructor for MitabRange.
MitabRange(Position start, Position end, Participant participant)	Constructor for MitabRange.

Uses of Participant in psidev.psi.mi.jami.tab.extension.datasource

Classes in psidev.psi.mi.jami.tab.extension.datasource with type parameters of type Participant

Modifier and Type	Class	Description
class	AbstractMitabSource<T extends Interaction,P extends Participant,F extends Feature>	Abstract class for an InteractionSource coming from a MITAB file.
class	AbstractMitabStreamSource<T extends Interaction,P extends Participant,F extends Feature>	abstract class for Mitab datasource.

Methods in psidev.psi.mi.jami.tab.extension.datasource with parameters of type Participant

Modifier and Type	Method	Description
void	AbstractMitabSource.onParticipantWithoutInteractor(Participant participant, FileSourceContext context)	Listen to en event fired when a Participant is read and no interactor details has been provided.
void	AbstractMitabStreamSource.onParticipantWithoutInteractor(Participant participant, FileSourceContext context)	Listen to en event fired when a Participant is read and no interactor details has been provided.
void	DefaultMitabStreamSource.onParticipantWithoutInteractor(Participant participant, FileSourceContext context)	Listen to en event fired when a Participant is read and no interactor details has been provided.

Uses of Participant in psidev.psi.mi.jami.tab.io.iterator

Classes in psidev.psi.mi.jami.tab.io.iterator with type parameters of type Participant

Modifier and Type	Class	Description
class	AbstractMitabIterator<T extends Interaction,P extends Participant,F extends Feature>	Abstract class for mitab iterator

Constructor parameters in psidev.psi.mi.jami.tab.io.iterator with type arguments of type Participant

Constructor	Description
MitabBinaryIterator(MitabLineParser<BinaryInteraction,Participant,Feature> lineParser)	Constructor for MitabBinaryIterator.
MitabInteractionIterator(MitabLineParser<Interaction,Participant,Feature> lineParser)	Constructor for MitabInteractionIterator.

Uses of Participant in psidev.psi.mi.jami.tab.io.parser

Classes in psidev.psi.mi.jami.tab.io.parser with type parameters of type Participant

Modifier and Type	Class	Description
class	AbstractInteractionLineParser<T extends Interaction,P extends Participant,F extends Feature>	Abstract mitab line parser
class	MitabLineParser<T extends Interaction,P extends Participant,F extends Feature>

Methods in psidev.psi.mi.jami.tab.io.parser with parameters of type Participant

Modifier and Type	Method	Description
protected abstract void	AbstractLightInteractionLineParser.addParticipant(Participant participant, T interaction)	addParticipant.
protected void	BinaryLineParser.addParticipant(Participant participant, BinaryInteraction interaction)	addParticipant.
protected void	InteractionLineParser.addParticipant(Participant participant, Interaction interaction)	addParticipant.

Uses of Participant in psidev.psi.mi.jami.tab.io.writer

Classes in psidev.psi.mi.jami.tab.io.writer with type parameters of type Participant

Modifier and Type	Class	Description
class	AbstractMitab25BinaryWriter<T extends BinaryInteraction,P extends Participant>	Abstract class for BinaryInteraction writer.
class	AbstractMitab26BinaryWriter<T extends BinaryInteraction,P extends Participant>	Abstract class for MITAB 2.6 writer of binary interactions
class	AbstractMitab27BinaryWriter<T extends BinaryInteraction,P extends Participant>	Abstract mitab 2.7 writer for binary interactions
class	AbstractMitab28BinaryWriter<T extends BinaryInteraction,P extends Participant>	Abstract mitab 2.8 writer for binary interactions
class	AbstractMitabWriter<T extends Interaction,B extends BinaryInteraction,P extends Participant>	Abstract writer for Mitab 2.5.

Uses of Participant in psidev.psi.mi.jami.tab.io.writer.feeder

Classes in psidev.psi.mi.jami.tab.io.writer.feeder with type parameters of type Participant

Modifier and Type	Class	Description
class	AbstractMitabColumnFeeder<T extends BinaryInteraction,P extends Participant>	Abstract Mitab 2.5 column feeder
interface	MitabColumnFeeder<T extends BinaryInteraction,P extends Participant>	A MITAB 2.5 column feeder will write the content of MITAB 2.5 columns

Methods in psidev.psi.mi.jami.tab.io.writer.feeder with parameters of type Participant

Modifier and Type	Method	Description
void	DefaultMitabColumnFeeder.writeAlias(Participant participant, Alias alias)	This methods write the dbsource, alias name and alias type of an alias.
void	DefaultMitabColumnFeeder.writeExperimentalRole(Participant participant)	Writes the experimentsl role of a participant evidence
void	DefaultMitabColumnFeeder.writeParticipantIdentificationMethod(Participant participant)	Writes participant identification method(s)

Uses of Participant in psidev.psi.mi.jami.tab.io.writer.feeder.extended

Methods in psidev.psi.mi.jami.tab.io.writer.feeder.extended with parameters of type Participant

Modifier and Type	Method	Description
void	DefaultExtendedMitabColumnFeeder.writeAlias(Participant participant, Alias alias)	This methods write the dbsource, alias name and alias type of an alias.

Uses of Participant in psidev.psi.mi.jami.utils

Methods in psidev.psi.mi.jami.utils that return Participant

Modifier and Type	Method	Description
static Participant	ParticipantUtils.collectBestBaitParticipantForSpokeExpansion(Collection<? extends Participant> participants)	Collect the 'best bait' candidate to be used among this participants.
static Participant	ParticipantUtils.createUnknownBasicParticipant()	createUnknownBasicParticipant

Methods in psidev.psi.mi.jami.utils that return types with arguments of type Participant

Modifier and Type	Method	Description
static Collection<Participant>	InteractionUtils.extractParticipantWithCausalRelationships(Interaction interaction)	This method can return all participants having causal relationships in an interaction

Methods in psidev.psi.mi.jami.utils with parameters of type Participant

Modifier and Type	Method	Description
static boolean	ParticipantUtils.doesParticipantHaveBiologicalRole(Participant participant, String roleId, String roleName)	To know if the participant does have a specific biological role
static boolean	ParticipantUtils.isParticipantAnAlternativeBaitForSpokeExpansion(Participant participant)	Check if the biological role of this participant is an alternative bait for spoke expansion in case there are no baits: donor or enzyme.
static boolean	ParticipantUtils.isPutativeSelfParticipant(Participant p, boolean checkParticipantEvidence)	Method to know if a participant has a putative self biological role.
static boolean	ParticipantUtils.isSelfParticipant(Participant p, boolean checkParticipantEvidence)	Method to know if a participant has a self biological role If checkParticipantEvidence is set to true, it will check if the given p is a ParticipantEvidence and look at the experimental role

Method parameters in psidev.psi.mi.jami.utils with type arguments of type Participant

Modifier and Type	Method	Description
static Participant	ParticipantUtils.collectBestBaitParticipantForSpokeExpansion(Collection<? extends Participant> participants)	Collect the 'best bait' candidate to be used among this participants.

Uses of Participant in psidev.psi.mi.jami.utils.clone

Methods in psidev.psi.mi.jami.utils.clone with parameters of type Participant

Modifier and Type	Method	Description
static void	ParticipantCloner.copyAndOverrideBasicParticipantProperties(Participant source, Participant target, boolean createNewFeature)	This method will copy properties of participant source in participant target and will override all the other properties of Target participant.

Uses of Participant in psidev.psi.mi.jami.utils.comparator.interaction

Methods in psidev.psi.mi.jami.utils.comparator.interaction that return types with arguments of type Participant

Modifier and Type	Method	Description
CollectionComparator<Participant>	InteractionInteractorComparator.getParticipantCollectionComparator()	Getter for the field participantCollectionComparator.

Constructor parameters in psidev.psi.mi.jami.utils.comparator.interaction with type arguments of type Participant

Constructor	Description
InteractionInteractorComparator(CollectionComparator<Participant> interactorComparator)	Constructor for InteractionInteractorComparator.

Uses of Participant in psidev.psi.mi.jami.utils.comparator.participant

Methods in psidev.psi.mi.jami.utils.comparator.participant with parameters of type Participant

Modifier and Type	Method	Description
static boolean	DefaultExactParticipantBaseComparator.areEquals(Participant participant1, Participant participant2, boolean ignoreInteractors)	Use DefaultExactParticipantBaseComparator to know if two participants are equals.
static boolean	DefaultExactParticipantComparator.areEquals(Participant participant1, Participant participant2)	Use DefaultExactParticipantComparator to know if two participants are equals.
static boolean	DefaultParticipantBaseComparator.areEquals(Participant participant1, Participant participant2, boolean ignoreInteractors)	Use DefaultParticipantBaseComparator to know if two participants are equals.
static boolean	DefaultParticipantComparator.areEquals(Participant participant1, Participant participant2)	Use DefaultParticipantComparator to know if two participants are equals.
static boolean	UnambiguousExactParticipantBaseComparator.areEquals(Participant participant1, Participant participant2)	Use UnambiguousExactParticipantBaseComparator to know if two participants are equals.
static boolean	UnambiguousExactParticipantComparator.areEquals(Participant participant1, Participant participant2)	Use UnambiguousExactParticipantComparator to know if two participants are equals.
static boolean	UnambiguousParticipantBaseComparator.areEquals(Participant participant1, Participant participant2)	Use UnambiguousParticipantBaseComparator to know if two participants are equals.
static boolean	UnambiguousParticipantComparator.areEquals(Participant participant1, Participant participant2)	Use UnambiguousParticipantComparator to know if two participants are equals.
int	ParticipantBaseComparator.compare(Participant participant1, Participant participant2)	It will first compare the interactors using InteractorComparator.
int	ParticipantComparator.compare(Participant participant1, Participant participant2)	Modelled participants come first and then experimental participants.
int	UnambiguousExactParticipantBaseComparator.compare(Participant participant1, Participant participant2)	It will first compare the interactors using UnambiguousExactEntityBaseComparator.
int	UnambiguousExactParticipantComparator.compare(Participant participant1, Participant participant2)	Modelled participants come first and then experimental participants.
int	UnambiguousParticipantBaseComparator.compare(Participant participant1, Participant participant2)	It will first compare the interactors and stoichiometry using UnambiguousEntityComparator.
int	UnambiguousParticipantComparator.compare(Participant participant1, Participant participant2)	Modelled participants come first and then experimental participants.
static int	UnambiguousExactParticipantBaseComparator.hashCode(Participant participant)	hashCode
static int	UnambiguousParticipantBaseComparator.hashCode(Participant participant)	hashCode

Uses of Participant in psidev.psi.mi.jami.xml.io.parser

Methods in psidev.psi.mi.jami.xml.io.parser that return types with arguments of type Participant

Modifier and Type	Method	Description
AbstractEntrySet<AbstractBaseEntry<Interaction<? extends Participant>>>	LightFullXmlBinaryParser.getEntrySet()	getEntrySet.

Uses of Participant in psidev.psi.mi.jami.xml.io.writer.elements

Classes in psidev.psi.mi.jami.xml.io.writer.elements with type parameters of type Participant

Modifier and Type	Interface	Description
interface	PsiXmlParticipantWriter<T extends Participant>	Interface for PSI-XML participant writers.

Methods in psidev.psi.mi.jami.xml.io.writer.elements with type parameters of type Participant

Modifier and Type	Method	Description
static <P extends Participant> PsiXmlParticipantWriter<P>[]	PsiXmlElementWriterFactory.createParticipantWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory category, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlElementWriter<Confidence> confidenceWriter, PsiXmlElementWriter<Interactor> interactorWriter, PsiXmlVariableNameWriter<CvTerm> cvWriter, PsiXmlVariableNameWriter<CvTerm> openCvWriter, PsiXmlParameterWriter parameterWriter)	createParticipantWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements with parameters of type Participant

Modifier and Type	Method	Description
void	PsiXmlCausalRelationshipWriter.write(CausalRelationship object, Participant source)	write.

Uses of Participant in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts

Classes in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts with type parameters of type Participant

Modifier and Type	Class	Description
class	AbstractXmlInteractionWriter<T extends Interaction,P extends Participant>	Abstract writer of interaction
class	AbstractXmlParticipantWriter<P extends Participant,F extends Feature>	Abstract Xml writer for participant

Uses of Participant in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25 with parameters of type Participant

Modifier and Type	Method	Description
protected void	AbstractXmlParticipantWriter.writeConfidences(Participant object)	writeConfidences.
protected void	AbstractXmlParticipantWriter.writeExperimentalInteractor(Participant object)	writeExperimentalInteractor.
protected void	AbstractXmlParticipantWriter.writeExperimentalPreparations(Participant object)	writeExperimentalPreparations.
protected void	AbstractXmlParticipantWriter.writeExperimentalRoles(Participant object)	writeExperimentalRoles.
protected void	AbstractXmlParticipantWriter.writeHostOrganisms(Participant object)	writeHostOrganisms.
protected void	AbstractXmlNamedParticipantWriter.writeNames(Participant object)	writeNames.
protected void	AbstractXmlParticipantWriter.writeOtherAttributes(Participant object, boolean writeAttributeList)	writeOtherAttributes.
protected void	AbstractXmlParticipantWriter.writeParameters(Participant object)	writeParameters.
protected void	AbstractXmlParticipantWriter.writeParticipantIdentificationMethods(Participant object, CvTerm method)	writeParticipantIdentificationMethods.
protected void	AbstractXmlParticipantWriter.writeStoichiometry(Participant object)	writeStoichiometry.

Uses of Participant in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.xml30 with parameters of type Participant

Modifier and Type	Method	Description
void	XmlCausalRelationshipWriter.write(CausalRelationship object, Participant source)	write.
protected void	XmlCausalRelationshipWriter.writeSource(CausalRelationship object, Participant source)	writeSource.

Uses of Participant in psidev.psi.mi.jami.xml.model.extension

Classes in psidev.psi.mi.jami.xml.model.extension with type parameters of type Participant

Modifier and Type	Interface	Description
interface	ExtendedPsiXmlInteraction<T extends Participant>	Extended interaction for PSI-XML 2,5 standards
interface	PsiXmlInteraction<T extends Participant>	Interaction for PSI-XML which contains the entry

Subinterfaces of Participant in psidev.psi.mi.jami.xml.model.extension

Modifier and Type	Interface	Description
interface	ExtendedPsiXmlParticipant<I extends Interaction,F extends Feature>	Extended participant for PSI-XML 2,5 standards
interface	ExtendedPsiXmlParticipantEvidence	Extended participant evidence for PSI-XML 2,5 standards

Uses of Participant in psidev.psi.mi.jami.xml.model.extension.binary

Classes in psidev.psi.mi.jami.xml.model.extension.binary with type parameters of type Participant

Modifier and Type	Class	Description
class	AbstractExtendedXmlBinaryInteraction<P extends Participant>	Abstract class for xml binary interactions
class	AbstractXmlBinaryInteraction<P extends Participant>	Abstract class for xml binary interactions

Methods in psidev.psi.mi.jami.xml.model.extension.binary that return Participant

Modifier and Type	Method	Description
Participant	XmlBinaryInteractionWrapper.getParticipantA()	getParticipantA.
Participant	XmlBinaryInteractionWrapper.getParticipantB()	getParticipantB.

Methods in psidev.psi.mi.jami.xml.model.extension.binary that return types with arguments of type Participant

Modifier and Type	Method	Description
Collection<Participant>	XmlBinaryInteractionWrapper.getParticipants()	The collection of participants involved in this interaction.

Methods in psidev.psi.mi.jami.xml.model.extension.binary with parameters of type Participant

Modifier and Type	Method	Description
boolean	XmlBinaryInteractionWrapper.addParticipant(Participant part)	This method will add the participant and set the interaction of the new participant to this current interaction
boolean	XmlBinaryInteractionWrapper.removeParticipant(Participant part)	This method will remove the participant and set the interaction of the new participant to null
void	XmlBinaryInteractionWrapper.setParticipantA(Participant participantA)	Sets the first participant of this interaction
void	XmlBinaryInteractionWrapper.setParticipantB(Participant participantB)	Sets the second participant of this interaction

Method parameters in psidev.psi.mi.jami.xml.model.extension.binary with type arguments of type Participant

Modifier and Type	Method	Description
boolean	XmlBinaryInteractionWrapper.addAllParticipants(Collection<? extends Participant> participants)	This method will add all the participant and set the interaction of the new participant to this current interaction
boolean	XmlBinaryInteractionWrapper.removeAllParticipants(Collection<? extends Participant> participants)	This method will remove the participant and set the interaction of the removed participant to null.

Constructors in psidev.psi.mi.jami.xml.model.extension.binary with parameters of type Participant

Constructor	Description
XmlBinaryInteraction(String shortName, CvTerm type, Participant participantA, Participant participantB)	Constructor for XmlBinaryInteraction.
XmlBinaryInteraction(String shortName, CvTerm type, Participant participantA, Participant participantB, CvTerm complexExpansion)	Constructor for XmlBinaryInteraction.
XmlBinaryInteraction(String shortName, Participant participantA, Participant participantB)	Constructor for XmlBinaryInteraction.
XmlBinaryInteraction(String shortName, Participant participantA, Participant participantB, CvTerm complexExpansion)	Constructor for XmlBinaryInteraction.
XmlBinaryInteraction(Participant participantA, Participant participantB)	Constructor for XmlBinaryInteraction.
XmlBinaryInteraction(Participant participantA, Participant participantB, CvTerm complexExpansion)	Constructor for XmlBinaryInteraction.

Uses of Participant in psidev.psi.mi.jami.xml.model.extension.datasource

Methods in psidev.psi.mi.jami.xml.model.extension.datasource with parameters of type Participant

Modifier and Type	Method	Description
void	AbstractPsiXmlStream.onParticipantWithoutInteractor(Participant participant, FileSourceContext context)	Listen to en event fired when a Participant is read and no interactor details has been provided.
void	DefaultPsiXmlStreamSource.onParticipantWithoutInteractor(Participant participant, FileSourceContext context)	Listen to en event fired when a Participant is read and no interactor details has been provided.

Uses of Participant in psidev.psi.mi.jami.xml.model.extension.factory.xml25

Methods in psidev.psi.mi.jami.xml.model.extension.factory.xml25 with parameters of type Participant

Modifier and Type	Method	Description
BinaryInteraction	XmlBinaryInteractionFactory.createBasicBinaryInteractionFrom(Interaction interaction, Participant p1, Participant p2, CvTerm expansionMethod)	Create a new BinaryInteraction object from an Interaction parent and two participants

Uses of Participant in psidev.psi.mi.jami.xml.model.extension.factory.xml30

Methods in psidev.psi.mi.jami.xml.model.extension.factory.xml30 with parameters of type Participant

Modifier and Type	Method	Description
BinaryInteraction	XmlBinaryInteractionFactory.createBasicBinaryInteractionFrom(Interaction interaction, Participant p1, Participant p2, CvTerm expansionMethod)	Create a new BinaryInteraction object from an Interaction parent and two participants

Uses of Participant in psidev.psi.mi.jami.xml.model.extension.xml253

Classes in psidev.psi.mi.jami.xml.model.extension.xml253 with type parameters of type Participant

Modifier and Type	Class	Description
class	AbstractPsiXmlInteraction<T extends Participant>	Abstract class for xml interactions implementing ExtendedPsiXmlInteraction interface
class	AbstractXmlInteraction<T extends Participant>	Abstract class for xml interactions
static class	AbstractXmlInteraction.JAXBParticipantWrapper<T extends Participant>

Classes in psidev.psi.mi.jami.xml.model.extension.xml253 that implement Participant

Modifier and Type	Class	Description
class	AbstractXmlParticipant<I extends Interaction,F extends Feature>	Abstract class for XmlParticipant
class	AbstractXmlParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>	Abstract class for XML Participant pool
class	XmlExperimentalParticipantPool	Xml implementation of participant pool
class	XmlExperimentalParticipantPoolWrapper	Wrapper for Xml participants pools Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
class	XmlModelledParticipant	XML implementation of ModelledParticipant
class	XmlModelledParticipantPool	Xml implementation of participant pool
class	XmlParticipant	Xml implementation of a simple participant
class	XmlParticipantEvidence	Xml implementation of ParticipantEvidence
class	XmlParticipantEvidenceWrapper	Wrapper for Xml participants Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
class	XmlParticipantPoolWrapper	Wrapper for XmlParticipant
class	XmlParticipantWrapper	Wrapper for XmlParticipant

Methods in psidev.psi.mi.jami.xml.model.extension.xml253 that return types with arguments of type Participant

Modifier and Type	Method	Description
List<Participant>	AbstractXmlBasicInteraction.JAXBParticipantWrapper.getJAXBParticipants()
ExtendedPsiXmlFeature<Participant,Feature>	XmlFeatureWrapper.getWrappedFeature()	getWrappedFeature.

Constructors in psidev.psi.mi.jami.xml.model.extension.xml253 with parameters of type Participant

Constructor	Description
XmlRange(Position start, Position end, boolean isLink, Participant participant)	Constructor for XmlRange.
XmlRange(Position start, Position end, Participant participant)	Constructor for XmlRange.

Constructor parameters in psidev.psi.mi.jami.xml.model.extension.xml253 with type arguments of type Participant

Constructor	Description
XmlBasicInteractionComplexWrapper(ExtendedPsiXmlInteraction<? extends Participant> interaction)	Constructor for XmlBasicInteractionComplexWrapper.

Uses of Participant in psidev.psi.mi.jami.xml.model.extension.xml254

Classes in psidev.psi.mi.jami.xml.model.extension.xml254 with type parameters of type Participant

Modifier and Type	Class	Description
class	AbstractPsiXmlInteraction<T extends Participant>	Abstract class for xml interactions implementing ExtendedPsiXmlInteraction interface
class	AbstractXmlInteraction<T extends Participant>	Abstract class for xml interactions
static class	AbstractXmlInteraction.JAXBParticipantWrapper<T extends Participant>

Classes in psidev.psi.mi.jami.xml.model.extension.xml254 that implement Participant

Modifier and Type	Class	Description
class	AbstractXmlParticipant<I extends Interaction,F extends Feature>	Abstract class for XmlParticipant
class	AbstractXmlParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>	Abstract class for XML Participant pool
class	XmlExperimentalParticipantPool	Xml implementation of participant pool
class	XmlExperimentalParticipantPoolWrapper	Wrapper for Xml participants pools Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
class	XmlModelledParticipant	XML implementation of ModelledParticipant
class	XmlModelledParticipantPool	Xml implementation of participant pool
class	XmlParticipant	Xml implementation of a simple participant
class	XmlParticipantEvidence	Xml implementation of ParticipantEvidence
class	XmlParticipantEvidenceWrapper	Wrapper for Xml participants Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
class	XmlParticipantPoolWrapper	Wrapper for XmlParticipant
class	XmlParticipantWrapper	Wrapper for XmlParticipant

Methods in psidev.psi.mi.jami.xml.model.extension.xml254 that return types with arguments of type Participant

Modifier and Type	Method	Description
List<Participant>	AbstractXmlBasicInteraction.JAXBParticipantWrapper.getJAXBParticipants()
ExtendedPsiXmlFeature<Participant,Feature>	XmlFeatureWrapper.getWrappedFeature()	getWrappedFeature.

Constructors in psidev.psi.mi.jami.xml.model.extension.xml254 with parameters of type Participant

Constructor	Description
XmlRange(Position start, Position end, boolean isLink, Participant participant)	Constructor for XmlRange.
XmlRange(Position start, Position end, Participant participant)	Constructor for XmlRange.

Constructor parameters in psidev.psi.mi.jami.xml.model.extension.xml254 with type arguments of type Participant

Constructor	Description
XmlBasicInteractionComplexWrapper(ExtendedPsiXmlInteraction<? extends Participant> interaction)	Constructor for XmlBasicInteractionComplexWrapper.

Uses of Participant in psidev.psi.mi.jami.xml.model.extension.xml300

Classes in psidev.psi.mi.jami.xml.model.extension.xml300 with type parameters of type Participant

Modifier and Type	Class	Description
class	AbstractPsiXmlInteraction<T extends Participant>	Abstract class for xml interactions implementing ExtendedPsiXmlInteraction interface
class	AbstractXmlInteraction<T extends Participant>	Abstract class for xml interactions
static class	AbstractXmlInteraction.JAXBParticipantWrapper<T extends Participant>

Classes in psidev.psi.mi.jami.xml.model.extension.xml300 that implement Participant

Modifier and Type	Class	Description
class	AbstractXmlParticipant<I extends Interaction,F extends Feature>	Abstract class for XmlParticipant
class	AbstractXmlParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>	Abstract class for XML Participant pool
class	XmlExperimentalParticipantPool	Xml implementation of participant pool
class	XmlExperimentalParticipantPoolWrapper	Wrapper for Xml participants pools Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
class	XmlModelledParticipant	XML implementation of ModelledParticipant
class	XmlModelledParticipantPool	Xml implementation of participant pool
class	XmlParticipant	Xml implementation of a simple participant
class	XmlParticipantEvidence	Xml implementation of ParticipantEvidence
class	XmlParticipantEvidenceWrapper	Wrapper for Xml participants Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
class	XmlParticipantPoolWrapper	Wrapper for XmlParticipant
class	XmlParticipantWrapper	Wrapper for XmlParticipant

Methods in psidev.psi.mi.jami.xml.model.extension.xml300 that return types with arguments of type Participant

Modifier and Type	Method	Description
List<Participant>	AbstractXmlBasicInteraction.JAXBParticipantWrapper.getJAXBParticipants()
ExtendedPsiXmlFeature<Participant,Feature>	XmlFeatureWrapper.getWrappedFeature()	getWrappedFeature.

Constructors in psidev.psi.mi.jami.xml.model.extension.xml300 with parameters of type Participant

Constructor	Description
XmlCausalRelationship(CvTerm relationType, Participant target)	Constructor for XmlCausalRelationship.
XmlRange(Position start, Position end, boolean isLink, Participant participant)	Constructor for XmlRange.
XmlRange(Position start, Position end, Participant participant)	Constructor for XmlRange.

Constructor parameters in psidev.psi.mi.jami.xml.model.extension.xml300 with type arguments of type Participant

Constructor	Description
XmlBasicInteractionComplexWrapper(ExtendedPsiXmlInteraction<? extends Participant> interaction)	Constructor for XmlBasicInteractionComplexWrapper.

Uses of Participant in psidev.psi.mi.jami.xml.model.reference.xml253

Classes in psidev.psi.mi.jami.xml.model.reference.xml253 that implement Participant

Modifier and Type	Class	Description
class	AbstractParticipantRef<I extends Interaction,T extends Feature>	Abstract participant reference

Uses of Participant in psidev.psi.mi.jami.xml.model.reference.xml254

Classes in psidev.psi.mi.jami.xml.model.reference.xml254 that implement Participant

Modifier and Type	Class	Description
class	AbstractParticipantRef<I extends Interaction,T extends Feature>	Abstract participant reference

Uses of Participant in psidev.psi.mi.jami.xml.model.reference.xml300

Classes in psidev.psi.mi.jami.xml.model.reference.xml300 that implement Participant

Modifier and Type	Class	Description
class	AbstractParticipantRef<I extends Interaction,T extends Feature>	Abstract participant reference