Uses of Interface
psidev.psi.mi.jami.model.Interactor

Packages that use Interactor

Package	Description
psidev.psi.mi.jami.bridges.fetcher
psidev.psi.mi.jami.crosslink.extension
psidev.psi.mi.jami.crosslink.extension.datasource
psidev.psi.mi.jami.datasource
psidev.psi.mi.jami.enricher
psidev.psi.mi.jami.enricher.impl
psidev.psi.mi.jami.enricher.impl.full
psidev.psi.mi.jami.enricher.impl.minimal
psidev.psi.mi.jami.enricher.listener
psidev.psi.mi.jami.enricher.listener.impl
psidev.psi.mi.jami.enricher.listener.impl.log
psidev.psi.mi.jami.enricher.listener.impl.writer
psidev.psi.mi.jami.factory
psidev.psi.mi.jami.html
psidev.psi.mi.jami.json
psidev.psi.mi.jami.json.elements
psidev.psi.mi.jami.json.nary
psidev.psi.mi.jami.listener
psidev.psi.mi.jami.listener.impl
psidev.psi.mi.jami.model
psidev.psi.mi.jami.model.impl
psidev.psi.mi.jami.tab.extension
psidev.psi.mi.jami.tab.extension.datasource
psidev.psi.mi.jami.tab.extension.factory
psidev.psi.mi.jami.tab.io.parser
psidev.psi.mi.jami.utils
psidev.psi.mi.jami.utils.clone
psidev.psi.mi.jami.utils.comparator.interactor
psidev.psi.mi.jami.xml
psidev.psi.mi.jami.xml.cache
psidev.psi.mi.jami.xml.io.writer.compact
psidev.psi.mi.jami.xml.io.writer.elements
psidev.psi.mi.jami.xml.io.writer.elements.impl
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts
psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25
psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml30
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded
psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml30
psidev.psi.mi.jami.xml.model
psidev.psi.mi.jami.xml.model.extension
psidev.psi.mi.jami.xml.model.extension.binary.xml30
psidev.psi.mi.jami.xml.model.extension.datasource
psidev.psi.mi.jami.xml.model.extension.factory
psidev.psi.mi.jami.xml.model.extension.xml253
psidev.psi.mi.jami.xml.model.extension.xml254
psidev.psi.mi.jami.xml.model.extension.xml300
psidev.psi.mi.jami.xml.model.reference.xml253
psidev.psi.mi.jami.xml.model.reference.xml254
psidev.psi.mi.jami.xml.model.reference.xml300
psidev.psi.mi.jami.xml.model.xml253
psidev.psi.mi.jami.xml.model.xml254
psidev.psi.mi.jami.xml.model.xml30

Uses of Interactor in psidev.psi.mi.jami.bridges.fetcher

Classes in psidev.psi.mi.jami.bridges.fetcher with type parameters of type Interactor

Modifier and Type	Interface	Description
interface	InteractorFetcher<I extends Interactor>	Fetches the complete records which match an interactor.

Uses of Interactor in psidev.psi.mi.jami.crosslink.extension

Classes in psidev.psi.mi.jami.crosslink.extension that implement Interactor

Modifier and Type	Class	Description
class	CsvProtein	Crosslink CSV extension of Protein.

Constructors in psidev.psi.mi.jami.crosslink.extension with parameters of type Interactor

Constructor	Description
CsvExperimentalParticipantCandidate(Interactor interactor)	Constructor for CsvExperimentalParticipantCandidate.
CsvExperimentalParticipantCandidate(Interactor interactor, Stoichiometry stoichiometry)	Constructor for CsvExperimentalParticipantCandidate.
CsvParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm participantIdentificationMethod)	Constructor for CsvParticipantEvidence.
CsvParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm participantIdentificationMethod)	Constructor for CsvParticipantEvidence.
CsvParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, CvTerm participantIdentificationMethod)	Constructor for CsvParticipantEvidence.
CsvParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, Organism expressedIn, CvTerm participantIdentificationMethod)	Constructor for CsvParticipantEvidence.
CsvParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for CsvParticipantEvidence.
CsvParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, Organism expressedIn, CvTerm participantIdentificationMethod)	Constructor for CsvParticipantEvidence.
CsvParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for CsvParticipantEvidence.
CsvParticipantEvidence(InteractionEvidence interaction, Interactor interactor, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for CsvParticipantEvidence.
CsvParticipantEvidence(Interactor interactor)	Constructor for CsvParticipantEvidence.
CsvParticipantEvidence(Interactor interactor, CvTerm participantIdentificationMethod)	Constructor for CsvParticipantEvidence.
CsvParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm participantIdentificationMethod)	Constructor for CsvParticipantEvidence.
CsvParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, CvTerm participantIdentificationMethod)	Constructor for CsvParticipantEvidence.
CsvParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, Organism expressedIn, CvTerm participantIdentificationMethod)	Constructor for CsvParticipantEvidence.
CsvParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for CsvParticipantEvidence.
CsvParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, Organism expressedIn, CvTerm participantIdentificationMethod)	Constructor for CsvParticipantEvidence.
CsvParticipantEvidence(Interactor interactor, Stoichiometry stoichiometry)	Constructor for CsvParticipantEvidence.
CsvParticipantEvidence(Interactor interactor, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for CsvParticipantEvidence.

Uses of Interactor in psidev.psi.mi.jami.crosslink.extension.datasource

Methods in psidev.psi.mi.jami.crosslink.extension.datasource with parameters of type Interactor

Modifier and Type	Method	Description
void	AbstractCsvSource.onMissingInteractorName(Interactor interactor, FileSourceContext context)	Listen to an event fired when an interactor is read and does not have any names.
void	AbstractCsvStreamSource.onMissingInteractorName(Interactor interactor, FileSourceContext context)	Listen to an event fired when an interactor is read and does not have any names.
void	CsvMixedEvidenceSource.onMissingInteractorName(Interactor interactor, FileSourceContext context)	Listen to an event fired when an interactor is read and does not have any names.
void	CsvNaryEvidenceSource.onMissingInteractorName(Interactor interactor, FileSourceContext context)	Listen to an event fired when an interactor is read and does not have any names.

Uses of Interactor in psidev.psi.mi.jami.datasource

Classes in psidev.psi.mi.jami.datasource with type parameters of type Interactor

Modifier and Type	Interface	Description
interface	InteractorStream<T extends Interactor>	An interactor data source allows to stream the interactors of a given dataSource

Uses of Interactor in psidev.psi.mi.jami.enricher

Classes in psidev.psi.mi.jami.enricher with type parameters of type Interactor

Modifier and Type	Interface	Description
interface	InteractorEnricher<T extends Interactor>	Interface for interactor enrichers.

Methods in psidev.psi.mi.jami.enricher that return types with arguments of type Interactor

Modifier and Type	Method	Description
Comparator<Interactor>	InteractorPoolEnricher.getInteractorComparator()	getInteractorComparator.

Method parameters in psidev.psi.mi.jami.enricher with type arguments of type Interactor

Modifier and Type	Method	Description
void	InteractorPoolEnricher.setInteractorComparator(Comparator<Interactor> comparator)	setInteractorComparator.

Uses of Interactor in psidev.psi.mi.jami.enricher.impl

Classes in psidev.psi.mi.jami.enricher.impl with type parameters of type Interactor

Modifier and Type	Class	Description
class	AbstractInteractorEnricher<T extends Interactor>	Abstract class for enricher of interactors Minimal enrichment: - enrich fullname of an interactor.
class	AbstractInteractorUpdater<T extends Interactor>	Abstract class for updater of interactors Minimal update: - enrich shortname of an interactor.

Methods in psidev.psi.mi.jami.enricher.impl that return types with arguments of type Interactor

Modifier and Type	Method	Description
AbstractInteractorEnricher<Interactor>	CompositeInteractorEnricher.getInteractorBaseEnricher()	Getter for the field interactorBaseEnricher.
InteractorFetcher<Interactor>	CompositeInteractorEnricher.getInteractorFetcher()	getInteractorFetcher.
InteractorEnricherListener<Interactor>	CompositeInteractorEnricher.getListener()	getListener.

Methods in psidev.psi.mi.jami.enricher.impl with parameters of type Interactor

Modifier and Type	Method	Description
void	CompositeInteractorEnricher.enrich(Interactor object)	enrich.
void	CompositeInteractorEnricher.enrich(Interactor object, Interactor objectSource)	enrich.

Method parameters in psidev.psi.mi.jami.enricher.impl with type arguments of type Interactor

Modifier and Type	Method	Description
void	CompositeInteractorEnricher.enrich(Collection<Interactor> objects)	enrich.
void	CompositeInteractorEnricher.setListener(InteractorEnricherListener<Interactor> listener)	setListener.

Constructor parameters in psidev.psi.mi.jami.enricher.impl with type arguments of type Interactor

Constructor	Description
CompositeInteractorEnricher(AbstractInteractorEnricher<Interactor> interactorBaseEnricher)	Constructor for CompositeInteractorEnricher.

Uses of Interactor in psidev.psi.mi.jami.enricher.impl.full

Classes in psidev.psi.mi.jami.enricher.impl.full with type parameters of type Interactor

Modifier and Type	Class	Description
class	FullInteractorBaseEnricher<T extends Interactor>	Full interactor enricher
class	FullInteractorBaseUpdater<T extends Interactor>	Full updater of interactor

Methods in psidev.psi.mi.jami.enricher.impl.full that return types with arguments of type Interactor

Modifier and Type	Method	Description
Comparator<Interactor>	FullInteractorPoolEnricher.getInteractorComparator()	Getter for the field interactorComparator.
Comparator<Interactor>	FullInteractorPoolUpdater.getInteractorComparator()	Getter for the field interactorComparator.

Method parameters in psidev.psi.mi.jami.enricher.impl.full with type arguments of type Interactor

Modifier and Type	Method	Description
void	FullInteractorPoolEnricher.setInteractorComparator(Comparator<Interactor> interactorComparator)	setInteractorComparator.
void	FullInteractorPoolUpdater.setInteractorComparator(Comparator<Interactor> interactorComparator)	Setter for the field interactorComparator.

Uses of Interactor in psidev.psi.mi.jami.enricher.impl.minimal

Classes in psidev.psi.mi.jami.enricher.impl.minimal with type parameters of type Interactor

Modifier and Type	Class	Description
class	MinimalInteractorBaseEnricher<T extends Interactor>	A basic minimal enricher for interactors.
class	MinimalInteractorBaseUpdater<T extends Interactor>	A basic minimal updater for interactors.

Uses of Interactor in psidev.psi.mi.jami.enricher.listener

Classes in psidev.psi.mi.jami.enricher.listener with type parameters of type Interactor

Modifier and Type	Interface	Description
interface	InteractorEnricherListener<T extends Interactor>	Interface for interactor enricher listener

Uses of Interactor in psidev.psi.mi.jami.enricher.listener.impl

Classes in psidev.psi.mi.jami.enricher.listener.impl with type parameters of type Interactor

Modifier and Type	Class	Description
class	InteractorEnricherListenerManager<T extends Interactor>	Manager of interactor listeners

Methods in psidev.psi.mi.jami.enricher.listener.impl with parameters of type Interactor

Modifier and Type	Method	Description
void	InteractorPoolEnricherListenerManager.onAddedInteractor(InteractorPool interactor, Interactor added)	Listen to the event where an interactor has been added to the pool
void	EntityEnricherListenerManager.onInteractorUpdate(Entity entity, Interactor oldInteractor)	onInteractorUpdate
void	InteractorPoolEnricherListenerManager.onRemovedInteractor(InteractorPool interactor, Interactor removed)	Listen to the event where an interactor has been added to the pool

Uses of Interactor in psidev.psi.mi.jami.enricher.listener.impl.log

Classes in psidev.psi.mi.jami.enricher.listener.impl.log with type parameters of type Interactor

Modifier and Type	Class	Description
class	InteractorEnricherLogger<T extends Interactor>	Logger of interactor enrichment

Uses of Interactor in psidev.psi.mi.jami.enricher.listener.impl.writer

Classes in psidev.psi.mi.jami.enricher.listener.impl.writer with type parameters of type Interactor

Modifier and Type	Class	Description
class	InteractorEnricherStatisticsWriter<T extends Interactor>	TODO comment this

Methods in psidev.psi.mi.jami.enricher.listener.impl.writer with parameters of type Interactor

Modifier and Type	Method	Description
void	InteractorPoolEnricherStatisticsWriter.onAddedInteractor(InteractorPool interactor, Interactor added)	Listen to the event where an interactor has been added to the pool
void	EntityEnricherStatisticsWriter.onInteractorUpdate(Entity entity, Interactor oldInteractor)	onInteractorUpdate
void	InteractorPoolEnricherStatisticsWriter.onRemovedInteractor(InteractorPool interactor, Interactor removed)	Listen to the event where an interactor has been added to the pool

Uses of Interactor in psidev.psi.mi.jami.factory

Methods in psidev.psi.mi.jami.factory that return Interactor

Modifier and Type	Method	Description
Interactor	DefaultInteractorFactory.createInteractor(String name, CvTerm type)	Creates a default interactor from the name and interactor type
Interactor	InteractorFactory.createInteractor(String name, CvTerm type)	Creates a default interactor from the name and interactor type
Interactor	DefaultInteractorFactory.createInteractorFromDatabase(CvTerm database, String name)	Return the proper instance of the interactor if the database is recognized.
Interactor	InteractorFactory.createInteractorFromDatabase(CvTerm database, String name)	Return the proper instance of the interactor if the database is recognized.
Interactor	DefaultInteractorFactory.createInteractorFromIdentityXrefs(Collection<? extends Xref> xrefs, String name)	Return the proper instance of the interactor if the database is recognized (the interactor will be returned on the first database which is recognized).
Interactor	InteractorFactory.createInteractorFromIdentityXrefs(Collection<? extends Xref> xrefs, String name)	Return the proper instance of the interactor if the database is recognized (the interactor will be returned on the first database which is recognized).
Interactor	DefaultInteractorFactory.createInteractorFromInteractorType(CvTerm type, String name)	Return the proper instance of the interactor if the type is recognized and not null.
Interactor	InteractorFactory.createInteractorFromInteractorType(CvTerm type, String name)	Return the proper instance of the interactor if the type is recognized and not null.
protected Interactor	DefaultInteractorFactory.createInteractorFromRecognizedCategory(InteractorCategory category, String name, CvTerm type)	Creates an interactor from a given category (should be the canonical name of an Interactor interface)

Uses of Interactor in psidev.psi.mi.jami.html

Methods in psidev.psi.mi.jami.html with parameters of type Interactor

Modifier and Type	Method	Description
protected void	AbstractMIHtmlWriter.writeInteractor(Interactor interactor)	writeInteractor

Uses of Interactor in psidev.psi.mi.jami.json

Methods in psidev.psi.mi.jami.json with parameters of type Interactor

Modifier and Type	Method	Description
static String[]	MIJsonUtils.extractInteractorId(Xref ref, Interactor interactor)	extractInteractorId.

Uses of Interactor in psidev.psi.mi.jami.json.elements

Methods in psidev.psi.mi.jami.json.elements with parameters of type Interactor

Modifier and Type	Method	Description
void	SimpleJsonInteractorWriter.write(Interactor object)	write.

Uses of Interactor in psidev.psi.mi.jami.json.nary

Methods in psidev.psi.mi.jami.json.nary that return types with arguments of type Interactor

Modifier and Type	Method	Description
JsonElementWriter<Interactor>	AbstractMIJsonWriter.getInteractorWriter()	Getter for the field interactorWriter.

Uses of Interactor in psidev.psi.mi.jami.listener

Classes in psidev.psi.mi.jami.listener with type parameters of type Interactor

Modifier and Type	Interface	Description
interface	InteractorChangeListener<T extends Interactor>	A generic listener for an interactor.

Methods in psidev.psi.mi.jami.listener with parameters of type Interactor

Modifier and Type	Method	Description
void	InteractorPoolChangeListener.onAddedInteractor(InteractorPool interactor, Interactor added)	Listen to the event where an interactor has been added to the pool
void	EntityInteractorChangeListener.onInteractorUpdate(Entity entity, Interactor oldInteractor)	onInteractorUpdate
void	MIFileParserListener.onMissingInteractorName(Interactor interactor, FileSourceContext context)	Listen to an event fired when an interactor is read and does not have any names.
void	InteractorPoolChangeListener.onRemovedInteractor(InteractorPool interactor, Interactor removed)	Listen to the event where an interactor has been added to the pool

Uses of Interactor in psidev.psi.mi.jami.listener.impl

Classes in psidev.psi.mi.jami.listener.impl with type parameters of type Interactor

Modifier and Type	Class	Description
class	InteractorChangeLogger<T extends Interactor>	This listener will just interactor change events

Methods in psidev.psi.mi.jami.listener.impl with parameters of type Interactor

Modifier and Type	Method	Description
void	InteractorPoolChangeLogger.onAddedInteractor(InteractorPool protein, Interactor added)	Listen to the event where an interactor has been added to the pool
void	EntityChangeLogger.onInteractorUpdate(Entity entity, Interactor oldInteractor)	onInteractorUpdate
void	ParticipantChangeLogger.onInteractorUpdate(Entity entity, Interactor oldInteractor)	onInteractorUpdate
void	MIFileParserCompositeListener.onMissingInteractorName(Interactor interactor, FileSourceContext context)	Listen to an event fired when an interactor is read and does not have any names.
void	MIFileParserLogger.onMissingInteractorName(Interactor interactor, FileSourceContext context)	Listen to an event fired when an interactor is read and does not have any names.
void	InteractorPoolChangeLogger.onRemovedInteractor(InteractorPool protein, Interactor removed)	Listen to the event where an interactor has been added to the pool

Uses of Interactor in psidev.psi.mi.jami.model

Subinterfaces of Interactor in psidev.psi.mi.jami.model

Modifier and Type	Interface	Description
interface	BioactiveEntity	Molecules showing activity in a living system and which can interact with other molecules
interface	Complex	An interactor composed of interacting molecules that can be copurified.
interface	Gene	Interactor for genetic interactions
interface	InteractorPool	InteractorPool represents a collection of potential interactors but we cannot determine which one interacts.
interface	Molecule	This interface represents a simple molecule such as a protein, nucleic acid, gene, small molecule but excludes complexes and interactorSet
interface	NucleicAcid	Polymers of nucleotides which can interact with other molecules
interface	Polymer	A polymer is an interactor with a sequence
interface	Protein	Polymer of amino acids which can interact with other molecules.

Methods in psidev.psi.mi.jami.model that return Interactor

Modifier and Type	Method	Description
Interactor	Entity.getInteractor()	The molecule/complex of molecules which interacts.

Methods in psidev.psi.mi.jami.model with parameters of type Interactor

Modifier and Type	Method	Description
void	Entity.setInteractor(Interactor interactor)	Sets the interactor

Uses of Interactor in psidev.psi.mi.jami.model.impl

Classes in psidev.psi.mi.jami.model.impl that implement Interactor

Modifier and Type	Class	Description
class	DefaultBioactiveEntity	Default implementation for bioactive entity Notes: The equals and hashcode methods have NOT been overridden because the BioactiveEntity object is a complex object.
class	DefaultComplex	Default implementation for complexes Notes: The equals and hashcode methods have NOT been overridden because the Complex object is a complex object.
class	DefaultGene	Default implementation for gene Notes: The equals and hashcode methods have NOT been overridden because the Gene object is a complex object.
class	DefaultInteractor	Default implementation for Interactor Notes: The equals and hashcode methods have NOT been overridden because the Interactor object is a complex object.
class	DefaultInteractorPool	Default implementation for interactor pool
class	DefaultMolecule	The default implementation for a molecule Notes: The equals and hashcode methods have NOT been overridden because the molecule object is a complex object.
class	DefaultNucleicAcid	Default implementation for NucleicAcid.
class	DefaultPolymer	Default implementation for Polymer Notes: The equals and hashcode methods have NOT been overridden because the Polymer object is a complex object.
class	DefaultProtein	Default implementation for proteins and peptides Notes: The equals and hashcode methods have NOT been overridden because the Protein object is a complex object.

Methods in psidev.psi.mi.jami.model.impl that return Interactor

Modifier and Type	Method	Description
Interactor	AbstractEntity.getInteractor()	Getter for the field interactor.

Methods in psidev.psi.mi.jami.model.impl that return types with arguments of type Interactor

Modifier and Type	Method	Description
Iterator<Interactor>	DefaultInteractorPool.iterator()	iterator

Methods in psidev.psi.mi.jami.model.impl with parameters of type Interactor

Modifier and Type	Method	Description
boolean	DefaultInteractorPool.add(Interactor interactor)	add
void	AbstractParticipantPool.onInteractorUpdate(Entity entity, Interactor oldInteractor)	onInteractorUpdate
void	AbstractEntity.setInteractor(Interactor interactor)	Sets the interactor
void	AbstractParticipantPool.setInteractor(Interactor interactor)	Sets the interactor

Method parameters in psidev.psi.mi.jami.model.impl with type arguments of type Interactor

Modifier and Type	Method	Description
boolean	DefaultInteractorPool.addAll(Collection<? extends Interactor> interactors)
protected void	DefaultInteractorPool.initialiseInteractorCandidatesSetWith(Set<Interactor> interactorCandidates)

Constructors in psidev.psi.mi.jami.model.impl with parameters of type Interactor

Constructor	Description
AbstractEntity(Interactor interactor)	Constructor for AbstractEntity.
AbstractEntity(Interactor interactor, Stoichiometry stoichiometry)	Constructor for AbstractEntity.
AbstractParticipant(Interactor interactor)	Constructor for AbstractParticipant.
AbstractParticipant(Interactor interactor, CvTerm bioRole)	Constructor for AbstractParticipant.
AbstractParticipant(Interactor interactor, CvTerm bioRole, CvTerm biologicalEffect, Stoichiometry stoichiometry)	Constructor for AbstractParticipant.
AbstractParticipant(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for AbstractParticipant.
AbstractParticipant(Interactor interactor, Stoichiometry stoichiometry)	Constructor for AbstractParticipant.
AbstractParticipantCandidate(Interactor interactor)	Constructor for AbstractParticipantCandidate.
AbstractParticipantCandidate(Interactor interactor, Stoichiometry stoichiometry)	Constructor for AbstractParticipantCandidate.
DefaultExperimentalParticipantCandidate(Interactor interactor)	Constructor for DefaultExperimentalParticipantCandidate.
DefaultExperimentalParticipantCandidate(Interactor interactor, Stoichiometry stoichiometry)	Constructor for DefaultExperimentalParticipantCandidate.
DefaultModelledParticipant(Interactor interactor)	Constructor for DefaultModelledParticipant.
DefaultModelledParticipant(Interactor interactor, CvTerm bioRole)	Constructor for DefaultModelledParticipant.
DefaultModelledParticipant(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for DefaultModelledParticipant.
DefaultModelledParticipant(Interactor interactor, Stoichiometry stoichiometry)	Constructor for DefaultModelledParticipant.
DefaultModelledParticipantCandidate(Interactor interactor)	Constructor for DefaultModelledParticipantCandidate.
DefaultModelledParticipantCandidate(Interactor interactor, Stoichiometry stoichiometry)	Constructor for DefaultModelledParticipantCandidate.
DefaultNamedModelledParticipant(Interactor interactor)	Constructor for DefaultNamedModelledParticipant.
DefaultNamedModelledParticipant(Interactor interactor, CvTerm bioRole)	Constructor for DefaultNamedModelledParticipant.
DefaultNamedModelledParticipant(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for DefaultNamedModelledParticipant.
DefaultNamedModelledParticipant(Interactor interactor, Stoichiometry stoichiometry)	Constructor for DefaultNamedModelledParticipant.
DefaultNamedParticipant(Interactor interactor)	Constructor for DefaultNamedParticipant.
DefaultNamedParticipant(Interactor interactor, CvTerm bioRole)	Constructor for DefaultNamedParticipant.
DefaultNamedParticipant(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for DefaultNamedParticipant.
DefaultNamedParticipant(Interactor interactor, Stoichiometry stoichiometry)	Constructor for DefaultNamedParticipant.
DefaultNamedParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm participantIdentificationMethod)	Constructor for DefaultNamedParticipantEvidence.
DefaultNamedParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm participantIdentificationMethod)	Constructor for DefaultNamedParticipantEvidence.
DefaultNamedParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, CvTerm participantIdentificationMethod)	Constructor for DefaultNamedParticipantEvidence.
DefaultNamedParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, Organism expressedIn, CvTerm participantIdentificationMethod)	Constructor for DefaultNamedParticipantEvidence.
DefaultNamedParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for DefaultNamedParticipantEvidence.
DefaultNamedParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, Organism expressedIn, CvTerm participantIdentificationMethod)	Constructor for DefaultNamedParticipantEvidence.
DefaultNamedParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for DefaultNamedParticipantEvidence.
DefaultNamedParticipantEvidence(InteractionEvidence interaction, Interactor interactor, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for DefaultNamedParticipantEvidence.
DefaultNamedParticipantEvidence(Interactor interactor)	Constructor for DefaultNamedParticipantEvidence.
DefaultNamedParticipantEvidence(Interactor interactor, CvTerm participantIdentificationMethod)	Constructor for DefaultNamedParticipantEvidence.
DefaultNamedParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm participantIdentificationMethod)	Constructor for DefaultNamedParticipantEvidence.
DefaultNamedParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, CvTerm participantIdentificationMethod)	Constructor for DefaultNamedParticipantEvidence.
DefaultNamedParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, Organism expressedIn, CvTerm participantIdentificationMethod)	Constructor for DefaultNamedParticipantEvidence.
DefaultNamedParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for DefaultNamedParticipantEvidence.
DefaultNamedParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, Organism expressedIn, CvTerm participantIdentificationMethod)	Constructor for DefaultNamedParticipantEvidence.
DefaultNamedParticipantEvidence(Interactor interactor, Stoichiometry stoichiometry)	Constructor for DefaultNamedParticipantEvidence.
DefaultNamedParticipantEvidence(Interactor interactor, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for DefaultNamedParticipantEvidence.
DefaultParticipant(Interactor interactor)	Constructor for DefaultParticipant.
DefaultParticipant(Interactor interactor, CvTerm bioRole)	Constructor for DefaultParticipant.
DefaultParticipant(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for DefaultParticipant.
DefaultParticipant(Interactor interactor, Stoichiometry stoichiometry)	Constructor for DefaultParticipant.
DefaultParticipantCandidate(Interactor interactor)	Constructor for DefaultParticipantCandidate.
DefaultParticipantCandidate(Interactor interactor, Stoichiometry stoichiometry)	Constructor for DefaultParticipantCandidate.
DefaultParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm participantIdentificationMethod)	Constructor for DefaultParticipantEvidence.
DefaultParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm participantIdentificationMethod)	Constructor for DefaultParticipantEvidence.
DefaultParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, CvTerm participantIdentificationMethod)	Constructor for DefaultParticipantEvidence.
DefaultParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, Organism expressedIn, CvTerm participantIdentificationMethod)	Constructor for DefaultParticipantEvidence.
DefaultParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for DefaultParticipantEvidence.
DefaultParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, Organism expressedIn, CvTerm participantIdentificationMethod)	Constructor for DefaultParticipantEvidence.
DefaultParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for DefaultParticipantEvidence.
DefaultParticipantEvidence(InteractionEvidence interaction, Interactor interactor, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for DefaultParticipantEvidence.
DefaultParticipantEvidence(Interactor interactor)	Constructor for DefaultParticipantEvidence.
DefaultParticipantEvidence(Interactor interactor, CvTerm participantIdentificationMethod)	Constructor for DefaultParticipantEvidence.
DefaultParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm participantIdentificationMethod)	Constructor for DefaultParticipantEvidence.
DefaultParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, CvTerm participantIdentificationMethod)	Constructor for DefaultParticipantEvidence.
DefaultParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, Organism expressedIn, CvTerm participantIdentificationMethod)	Constructor for DefaultParticipantEvidence.
DefaultParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for DefaultParticipantEvidence.
DefaultParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, Organism expressedIn, CvTerm participantIdentificationMethod)	Constructor for DefaultParticipantEvidence.
DefaultParticipantEvidence(Interactor interactor, Stoichiometry stoichiometry)	Constructor for DefaultParticipantEvidence.
DefaultParticipantEvidence(Interactor interactor, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for DefaultParticipantEvidence.

Uses of Interactor in psidev.psi.mi.jami.tab.extension

Classes in psidev.psi.mi.jami.tab.extension that implement Interactor

Modifier and Type	Class	Description
class	MitabBioactiveEntity	Mitab extension for BioactiveEntity.
class	MitabComplex	Mitab extension for Complex.
class	MitabGene	Mitab extension for Gene.
class	MitabInteractor	Mitab extension for interactor.
class	MitabInteractorPool	The mitab extension for InteractorSet
class	MitabMolecule	Mitab extension for Molecule
class	MitabNucleicAcid	Mitab extension for NucleicAcid It will contain a FileSourceLocator
class	MitabPolymer	Mitab extension of Polymer.
class	MitabProtein	Mitab extension of Protein.

Constructors in psidev.psi.mi.jami.tab.extension with parameters of type Interactor

Constructor	Description
MitabModelledParticipant(Interactor interactor)	Constructor for MitabModelledParticipant.
MitabModelledParticipant(Interactor interactor, CvTerm bioRole)	Constructor for MitabModelledParticipant.
MitabModelledParticipant(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for MitabModelledParticipant.
MitabModelledParticipant(Interactor interactor, Stoichiometry stoichiometry)	Constructor for MitabModelledParticipant.
MitabParticipant(Interactor interactor)	Constructor for MitabParticipant.
MitabParticipant(Interactor interactor, CvTerm bioRole)	Constructor for MitabParticipant.
MitabParticipant(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for MitabParticipant.
MitabParticipant(Interactor interactor, Stoichiometry stoichiometry)	Constructor for MitabParticipant.
MitabParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm participantIdentificationMethod)	Constructor for MitabParticipantEvidence.
MitabParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm participantIdentificationMethod)	Constructor for MitabParticipantEvidence.
MitabParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, CvTerm participantIdentificationMethod)	Constructor for MitabParticipantEvidence.
MitabParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, Organism expressedIn, CvTerm participantIdentificationMethod)	Constructor for MitabParticipantEvidence.
MitabParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for MitabParticipantEvidence.
MitabParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, Organism expressedIn, CvTerm participantIdentificationMethod)	Constructor for MitabParticipantEvidence.
MitabParticipantEvidence(InteractionEvidence interaction, Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for MitabParticipantEvidence.
MitabParticipantEvidence(InteractionEvidence interaction, Interactor interactor, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for MitabParticipantEvidence.
MitabParticipantEvidence(Interactor interactor)	Constructor for MitabParticipantEvidence.
MitabParticipantEvidence(Interactor interactor, CvTerm participantIdentificationMethod)	Constructor for MitabParticipantEvidence.
MitabParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm participantIdentificationMethod)	Constructor for MitabParticipantEvidence.
MitabParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, CvTerm participantIdentificationMethod)	Constructor for MitabParticipantEvidence.
MitabParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, Organism expressedIn, CvTerm participantIdentificationMethod)	Constructor for MitabParticipantEvidence.
MitabParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for MitabParticipantEvidence.
MitabParticipantEvidence(Interactor interactor, CvTerm bioRole, CvTerm expRole, Stoichiometry stoichiometry, Organism expressedIn, CvTerm participantIdentificationMethod)	Constructor for MitabParticipantEvidence.
MitabParticipantEvidence(Interactor interactor, Stoichiometry stoichiometry)	Constructor for MitabParticipantEvidence.
MitabParticipantEvidence(Interactor interactor, Stoichiometry stoichiometry, CvTerm participantIdentificationMethod)	Constructor for MitabParticipantEvidence.

Uses of Interactor in psidev.psi.mi.jami.tab.extension.datasource

Methods in psidev.psi.mi.jami.tab.extension.datasource with parameters of type Interactor

Modifier and Type	Method	Description
void	AbstractMitabSource.onMissingInteractorName(Interactor interactor, FileSourceContext context)	Listen to an event fired when an interactor is read and does not have any names.
void	AbstractMitabStreamSource.onMissingInteractorName(Interactor interactor, FileSourceContext context)	Listen to an event fired when an interactor is read and does not have any names.
void	DefaultMitabStreamSource.onMissingInteractorName(Interactor interactor, FileSourceContext context)	Listen to an event fired when an interactor is read and does not have any names.

Uses of Interactor in psidev.psi.mi.jami.tab.extension.factory

Methods in psidev.psi.mi.jami.tab.extension.factory that return Interactor

Modifier and Type	Method	Description
Interactor	MitabInteractorFactory.createInteractorFromInteractorTypes(Collection<MitabCvTerm> types, String name)	Return the proper instance of the interactor if at least one type is recognized (always take the first recognized type).

Uses of Interactor in psidev.psi.mi.jami.tab.io.parser

Methods in psidev.psi.mi.jami.tab.io.parser that return Interactor

Modifier and Type	Method	Description
protected Interactor	AbstractInteractionLineParser.createInteractorFrom(Collection<MitabXref> uniqueId, Collection<MitabXref> altid, Collection<MitabAlias> aliases, Collection<MitabOrganism> taxid, Collection<MitabCvTerm> type, Collection<MitabXref> xref, Collection<MitabChecksum> checksum, int line, int column, int mitabColumn)	createInteractorFrom.

Methods in psidev.psi.mi.jami.tab.io.parser with parameters of type Interactor

Modifier and Type	Method	Description
protected void	AbstractInteractionLineParser.createAliasFromAltId(Interactor interactor, MitabXref ref)	createAliasFromAltId.
protected void	AbstractInteractionLineParser.createChecksumFromAlias(Interactor interactor, MitabAlias alias)	createChecksumFromAlias.
protected void	AbstractInteractionLineParser.createChecksumFromAltId(Interactor interactor, MitabXref ref)	createChecksumFromAltId.
protected void	AbstractInteractionLineParser.fillInteractorWithAliases(Collection<MitabAlias> aliases, Interactor interactor)	fillInteractorWithAliases.
protected void	AbstractInteractionLineParser.fillInteractorWithAlternativeIdentifiers(Collection<MitabXref> altid, Interactor interactor)	fillInteractorWithAlternativeIdentifiers.
protected void	AbstractInteractionLineParser.initialiseOrganism(Collection<MitabOrganism> organisms, Interactor interactor)	initialiseOrganism.

Uses of Interactor in psidev.psi.mi.jami.utils

Methods in psidev.psi.mi.jami.utils that return Interactor

Modifier and Type	Method	Description
static Interactor	InteractorUtils.createUnknownBasicInteractor()	createUnknownBasicInteractor

Methods in psidev.psi.mi.jami.utils with parameters of type Interactor

Modifier and Type	Method	Description
static boolean	InteractorUtils.doesInteractorHaveType(Interactor interactor, String typeId, String typeName)	To know if an interactor have a specific interactor type.

Uses of Interactor in psidev.psi.mi.jami.utils.clone

Methods in psidev.psi.mi.jami.utils.clone with parameters of type Interactor

Modifier and Type	Method	Description
static void	InteractorCloner.copyAndOverrideBasicInteractorProperties(Interactor source, Interactor target)	This method will copy properties of interactor source in interactor target and will override all the other properties of Target interactor.

Uses of Interactor in psidev.psi.mi.jami.utils.comparator.interactor

Methods in psidev.psi.mi.jami.utils.comparator.interactor that return types with arguments of type Interactor

Modifier and Type	Method	Description
Comparator<Interactor>	ComplexComparator.getInteractorBaseComparator()	Getter for the field interactorBaseComparator.
Comparator<Interactor>	InteractorComparator.getInteractorBaseComparator()	Getter for the field interactorBaseComparator.
Comparator<Interactor>	InteractorPoolComparator.getInteractorBaseComparator()	Getter for the field interactorBaseComparator.
CollectionComparator<Interactor>	InteractorPoolComparator.getInteractorCollectionComparator()	Getter for the field interactorCollectionComparator.
Comparator<Interactor>	BioactiveEntityComparator.getInteractorComparator()	getInteractorComparator
Comparator<Interactor>	GeneComparator.getInteractorComparator()	getInteractorComparator
Comparator<Interactor>	PolymerComparator.getInteractorComparator()	Getter for the field interactorComparator.

Methods in psidev.psi.mi.jami.utils.comparator.interactor with parameters of type Interactor

Modifier and Type	Method	Description
static boolean	DefaultExactInteractorBaseComparator.areEquals(Interactor interactor1, Interactor interactor2)	Use DefaulExacttInteractorBaseComparator to know if two interactors are equals.
static boolean	DefaultExactInteractorComparator.areEquals(Interactor interactor1, Interactor interactor2)	Use DefaultExactInteractorComparator to know if two interactors are equals.
static boolean	DefaultInteractorBaseComparator.areEquals(Interactor interactor1, Interactor interactor2)	Use DefaultInteractorBaseComparator to know if two interactors are equals.
static boolean	DefaultInteractorComparator.areEquals(Interactor interactor1, Interactor interactor2)	Use DefaultInteractorComparator to know if two interactors are equals.
static boolean	UnambiguousExactInteractorBaseComparator.areEquals(Interactor interactor1, Interactor interactor2)	Use UnambiguousExacttInteractorBaseComparator to know if two interactors are equals.
static boolean	UnambiguousExactInteractorComparator.areEquals(Interactor interactor1, Interactor interactor2)	Use UnambiguousExactInteractorComparator to know if two interactors are equals.
static boolean	UnambiguousInteractorBaseComparator.areEquals(Interactor interactor1, Interactor interactor2)	Use DefaultConfidenceComparator to know if two confidences are equals.
static boolean	UnambiguousInteractorComparator.areEquals(Interactor interactor1, Interactor interactor2)	Use UnambiguousInteractorComparator to know if two interactors are equals.
int	ExactInteractorBaseComparator.compare(Interactor interactor1, Interactor interactor2)	It will first compare the interactor types using UnambiguousCvTermComparator.
int	InteractorBaseComparator.compare(Interactor interactor1, Interactor interactor2)	It will only compare identifiers if one interactor does have identifiers using UnambiguousIdentifierComparator.
int	InteractorComparator.compare(Interactor interactor1, Interactor interactor2)	Bioactive entities come first, then proteins, then genes, then nucleic acids, then complexes and finally InteractorPool.
int	UnambiguousExactInteractorComparator.compare(Interactor interactor1, Interactor interactor2)
int	UnambiguousInteractorComparator.compare(Interactor interactor1, Interactor interactor2)	Bioactive entities come first, then proteins, then genes, then nucleic acids, then complexes and finally InteractorPool.
static int	UnambiguousExactInteractorBaseComparator.hashCode(Interactor interactor)	hashCode
static int	UnambiguousInteractorBaseComparator.hashCode(Interactor interactor)	hashCode

Constructor parameters in psidev.psi.mi.jami.utils.comparator.interactor with type arguments of type Interactor

Constructor	Description
BioactiveEntityComparator(Comparator<Interactor> interactorBaseComparator)	Creates a new UnambiguousBioactiveEntityComparator.
ComplexComparator(Comparator<Interactor> interactorBaseComparator, CustomizableModelledParticipantComparator componentComparator, Comparator<CvTerm> cvTermComparator)	Creates a bew ComplexComparator.
ComplexComparator(Comparator<Interactor> interactorBaseComparator, ModelledParticipantCollectionComparator componentComparator, Comparator<CvTerm> cvTermComparator)	Creates a bew ComplexComparator.
GeneComparator(Comparator<Interactor> interactorBaseComparator)	Creates a new UnambiguousGeneComparator.
InteractorComparator(Comparator<Interactor> interactorBaseComparator, Comparator<Complex> complexComparator, Comparator<Polymer> polymerComparator, Comparator<BioactiveEntity> bioactiveEntityComparator, Comparator<Gene> geneComparator, Comparator<NucleicAcid> nucleicAcidComparator, Comparator<Protein> proteinComparator)	Creates a new InteractorComparator.
InteractorComparator(Comparator<Interactor> interactorBaseComparator, Comparator<Complex> complexComparator, Comparator<Polymer> polymerComparator, Comparator<BioactiveEntity> bioactiveEntityComparator, Comparator<Gene> geneComparator, Comparator<NucleicAcid> nucleicAcidComparator, Comparator<Protein> proteinComparator, Comparator<InteractorPool> poolComparator)	Constructor for InteractorComparator.
InteractorPoolComparator(InteractorComparator interactorComparator, CollectionComparator<Interactor> interactorCollectionComparator)	Creates a new InteractorPoolComparator
PolymerComparator(Comparator<Interactor> interactorBaseComparator, OrganismTaxIdComparator organismComparator)	Creates a new UnambiguousPolymerComparator.

Uses of Interactor in psidev.psi.mi.jami.xml

Methods in psidev.psi.mi.jami.xml with parameters of type Interactor

Modifier and Type	Method	Description
void	XmlEntryContext.registerInteractor(int id, Interactor o)	registerInteractor.

Uses of Interactor in psidev.psi.mi.jami.xml.cache

Methods in psidev.psi.mi.jami.xml.cache that return Interactor

Modifier and Type	Method	Description
Interactor	InMemoryPsiXmlCache.getInteractor(int id)	getInteractor.
Interactor	PsiXmlFileIndexCache.getInteractor(int id)	getInteractor.
Interactor	PsiXmlIdCache.getInteractor(int id)	getInteractor.

Methods in psidev.psi.mi.jami.xml.cache with parameters of type Interactor

Modifier and Type	Method	Description
int	InMemoryIdentityObjectCache.extractIdForInteractor(Interactor o)	This method will extract the id for this object if it is already registered, assign an id and register the object if not already registered
int	InMemoryLightIdentityObjectCache.extractIdForInteractor(Interactor o)	This method will extract the id for this object if it is already registered, assign an id and register the object if not already registered
int	PsiXmlObjectCache.extractIdForInteractor(Interactor o)	This method will extract the id for this object if it is already registered, assign an id and register the object if not already registered
void	InMemoryPsiXmlCache.registerInteractor(int id, Interactor object)	Register an interactor with an id
void	PsiXmlFileIndexCache.registerInteractor(int id, Interactor object)	Register an interactor with an id
void	PsiXmlIdCache.registerInteractor(int id, Interactor object)	Register an interactor with an id

Uses of Interactor in psidev.psi.mi.jami.xml.io.writer.compact

Methods in psidev.psi.mi.jami.xml.io.writer.compact that return types with arguments of type Interactor

Modifier and Type	Method	Description
protected Set<Interactor>	AbstractCompactXmlWriter.getInteractors()	Getter for the field interactors.
protected PsiXmlElementWriter<Interactor>	AbstractCompactXmlWriter.getInteractorWriter()	Getter for the field interactorWriter.

Method parameters in psidev.psi.mi.jami.xml.io.writer.compact with type arguments of type Interactor

Modifier and Type	Method	Description
void	AbstractCompactXmlMixWriter.setInteractorSet(Set<Interactor> interactors)	setInteractorSet.
void	AbstractCompactXmlWriter.setInteractorSet(Set<Interactor> interactors)	setInteractorSet.
protected void	AbstractCompactXmlMixWriter.setInteractorWriter(PsiXmlElementWriter<Interactor> interactorWriter)	Setter for the field interactorWriter.
protected void	AbstractCompactXmlWriter.setInteractorWriter(PsiXmlElementWriter<Interactor> interactorWriter)	Setter for the field interactorWriter.

Uses of Interactor in psidev.psi.mi.jami.xml.io.writer.elements

Methods in psidev.psi.mi.jami.xml.io.writer.elements that return types with arguments of type Interactor

Modifier and Type	Method	Description
static PsiXmlElementWriter<Interactor>	PsiXmlElementWriterFactory.createInteractorWriter(PsiXmlVersion version, XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlElementWriter<Alias> aliasWriter, PsiXmlElementWriter<Annotation> attributeWriter, PsiXmlXrefWriter primaryRefWriter, PsiXmlVariableNameWriter<CvTerm> interactorTypeWriter, PsiXmlElementWriter<Organism> organismWriter, PsiXmlElementWriter<Checksum> checksumWriter)	createInteractorWriter.

Method parameters in psidev.psi.mi.jami.xml.io.writer.elements with type arguments of type Interactor

Modifier and Type	Method	Description
static <P extends ParticipantCandidate> PsiXmlElementWriter<P>[]	PsiXmlElementWriterFactory.createParticipantCandidateWriter(XMLStreamWriter streamWriter, boolean extended, PsiXmlObjectCache objectIndex, PsiXmlVersion version, PsiXmlType xmlType, InteractionCategory category, PsiXmlElementWriter<Interactor> interactorWriter, PsiXmlElementWriter<ModelledFeature> modelledFeatureWriter, PsiXmlElementWriter<FeatureEvidence> featureEvidenceWriter)	createParticipantCandidateWriter.

Uses of Interactor in psidev.psi.mi.jami.xml.io.writer.elements.impl

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl with parameters of type Interactor

Modifier and Type	Method	Description
protected void	XmlInteractorWriter.processSequence(Interactor object)	processSequence.
void	XmlInteractorWriter.write(Interactor object)	write.
protected void	XmlInteractorWriter.writeAttributes(Interactor object)	writeAttributes.
protected void	XmlInteractorWriter.writeInteractorType(Interactor object)	writeInteractorType.
protected void	XmlInteractorWriter.writeNames(Interactor object)	writeNames.
protected void	XmlInteractorWriter.writeOrganism(Interactor object)	writeOrganism.
protected void	XmlInteractorWriter.writeOtherSetMembers(Interactor object, boolean needToWriteXref, boolean needToWritePrimaryRef)	writeOtherSetMembers.
protected void	XmlInteractorWriter.writeXref(Interactor object)	writeXref.
protected void	XmlInteractorWriter.writeXrefFromInteractorIdentifiers(Interactor object)	writeXrefFromInteractorIdentifiers.
protected void	XmlInteractorWriter.writeXrefFromInteractorXrefs(Interactor object)	writeXrefFromInteractorXrefs.

Uses of Interactor in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts that return types with arguments of type Interactor

Modifier and Type	Method	Description
PsiXmlElementWriter<Interactor>	AbstractXmlParticipantWriter.getInteractorWriter()	Getter for the field interactorWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts with parameters of type Interactor

Modifier and Type	Method	Description
protected abstract void	AbstractXmlExperimentalInteractorWriter.writeInteractor(Interactor interactor)	writeInteractor.
protected void	AbstractXmlModelledParticipantWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected abstract void	AbstractXmlParticipantWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	AbstractXmlParticipantWriter.writeMoleculeDescription(Interactor interactor)	writeMoleculeDescription.
protected void	AbstractXmlParticipantWriter.writeMoleculeRef(Interactor interactor)	writeMoleculeRef.

Method parameters in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts with type arguments of type Interactor

Modifier and Type	Method	Description
void	AbstractXmlParticipantWriter.setInteractorWriter(PsiXmlElementWriter<Interactor> interactorWriter)	Setter for the field interactorWriter.

Uses of Interactor in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30 that return types with arguments of type Interactor

Modifier and Type	Method	Description
PsiXmlElementWriter<Interactor>	AbstractXmlParticipantCandidateWriter.getInteractorWriter()	Getter for the field interactorWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30 with parameters of type Interactor

Modifier and Type	Method	Description
protected abstract void	AbstractXmlParticipantCandidateWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	AbstractXmlParticipantCandidateWriter.writeMoleculeDescription(Interactor interactor)	writeMoleculeDescription.
protected void	AbstractXmlParticipantCandidateWriter.writeMoleculeRef(Interactor interactor)	writeMoleculeRef.

Method parameters in psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30 with type arguments of type Interactor

Modifier and Type	Method	Description
void	AbstractXmlParticipantCandidateWriter.setInteractorWriter(PsiXmlElementWriter<Interactor> interactorWriter)	Setter for the field interactorWriter.

Uses of Interactor in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml25 with parameters of type Interactor

Modifier and Type	Method	Description
protected void	XmlModelledParticipantWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	XmlNamedParticipantWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	XmlParticipantEvidenceWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	XmlParticipantWriter.writeMolecule(Interactor interactor)	writeMolecule.

Uses of Interactor in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.compact.xml30 with parameters of type Interactor

Modifier and Type	Method	Description
protected void	XmlExperimentalParticipantCandidateWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	XmlModelledParticipantCandidateWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	XmlModelledParticipantWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	XmlParticipantEvidenceWriter.writeMolecule(Interactor interactor)	writeMolecule.

Uses of Interactor in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25 with parameters of type Interactor

Modifier and Type	Method	Description
protected void	XmlModelledParticipantWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	XmlNamedParticipantWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	XmlParticipantEvidenceWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	XmlParticipantWriter.writeMolecule(Interactor interactor)	writeMolecule.

Uses of Interactor in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml30 with parameters of type Interactor

Modifier and Type	Method	Description
protected void	XmlExperimentalParticipantCandidateWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	XmlModelledParticipantCandidateWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	XmlModelledParticipantWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	XmlNamedParticipantEvidenceWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	XmlParticipantEvidenceWriter.writeMolecule(Interactor interactor)	writeMolecule.

Uses of Interactor in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact with parameters of type Interactor

Modifier and Type	Method	Description
protected void	XmlExperimentalInteractorWriter.writeInteractor(Interactor interactor)	writeInteractor.

Uses of Interactor in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.compact.xml30 with parameters of type Interactor

Modifier and Type	Method	Description
protected void	XmlExperimentalParticipantCandidateWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	XmlModelledParticipantCandidateWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	XmlParticipantEvidenceWriter.writeMolecule(Interactor interactor)	writeMolecule.

Uses of Interactor in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded that return types with arguments of type Interactor

Modifier and Type	Method	Description
PsiXmlElementWriter<Interactor>	XmlExperimentalInteractorWriter.getInteractorWriter()	Getter for the field interactorWriter.

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded with parameters of type Interactor

Modifier and Type	Method	Description
protected void	XmlExperimentalInteractorWriter.writeInteractor(Interactor interactor)	writeInteractor.

Method parameters in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded with type arguments of type Interactor

Modifier and Type	Method	Description
void	XmlExperimentalInteractorWriter.setInteractorWriter(PsiXmlElementWriter<Interactor> interactorWriter)	Setter for the field interactorWriter.

Uses of Interactor in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml30

Methods in psidev.psi.mi.jami.xml.io.writer.elements.impl.extended.expanded.xml30 with parameters of type Interactor

Modifier and Type	Method	Description
protected void	XmlExperimentalParticipantCandidateWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	XmlModelledParticipantCandidateWriter.writeMolecule(Interactor interactor)	writeMolecule.
protected void	XmlParticipantEvidenceWriter.writeMolecule(Interactor interactor)	writeMolecule.

Uses of Interactor in psidev.psi.mi.jami.xml.model

Methods in psidev.psi.mi.jami.xml.model that return types with arguments of type Interactor

Modifier and Type	Method	Description
List<Interactor>	AbstractBaseEntry.getInteractors()	getInteractors.
List<Interactor>	AbstractBaseEntry.AbstractJAXBInteractorsWrapper.getJAXBInteractors()

Uses of Interactor in psidev.psi.mi.jami.xml.model.extension

Subinterfaces of Interactor in psidev.psi.mi.jami.xml.model.extension

Modifier and Type	Interface	Description
interface	ExtendedPsiXmlInteractor	Interface for interactors in PSI-XML standards

Classes in psidev.psi.mi.jami.xml.model.extension that implement Interactor

Modifier and Type	Class	Description
class	AbstractBaseXmlInteractor	The Xml implementation of Interactor

Methods in psidev.psi.mi.jami.xml.model.extension that return Interactor

Modifier and Type	Method	Description
Interactor	AbstractExperimentalInteractor.getInteractor()	Getter for the field interactor.

Methods in psidev.psi.mi.jami.xml.model.extension with parameters of type Interactor

Modifier and Type	Method	Description
void	AbstractExperimentalInteractor.setInteractor(Interactor interactor)	Setter for the field interactor.

Uses of Interactor in psidev.psi.mi.jami.xml.model.extension.binary.xml30

Classes in psidev.psi.mi.jami.xml.model.extension.binary.xml30 that implement Interactor

Modifier and Type	Class	Description
class	XmlModelledBinaryInteraction	Xml implementation of ModelledInteraction
class	XmlModelledBinaryInteractionWrapper	Wrapper for Xml binary interactions

Uses of Interactor in psidev.psi.mi.jami.xml.model.extension.datasource

Methods in psidev.psi.mi.jami.xml.model.extension.datasource with parameters of type Interactor

Modifier and Type	Method	Description
void	AbstractPsiXmlStream.onMissingInteractorName(Interactor interactor, FileSourceContext context)	Listen to an event fired when an interactor is read and does not have any names.
void	DefaultPsiXmlStreamSource.onMissingInteractorName(Interactor interactor, FileSourceContext context)	Listen to an event fired when an interactor is read and does not have any names.

Uses of Interactor in psidev.psi.mi.jami.xml.model.extension.factory

Methods in psidev.psi.mi.jami.xml.model.extension.factory that return Interactor

Modifier and Type	Method	Description
Interactor	XmlInteractorFactory.createInteractor(String name, CvTerm type)	Creates a default interactor from the name and interactor type
Interactor	XmlInteractorFactory.createInteractorFromXmlInteractorInstance(AbstractBaseXmlInteractor source)	createInteractorFromXmlInteractorInstance.

Uses of Interactor in psidev.psi.mi.jami.xml.model.extension.xml253

Classes in psidev.psi.mi.jami.xml.model.extension.xml253 that implement Interactor

Modifier and Type	Class	Description
class	AbstractXmlComplex	Xml implementation for complex
class	AbstractXmlInteractor	The Xml implementation of Interactor
class	DefaultXmlComplex	Xml implementation for complex
class	DefaultXmlInteractor	The Xml implementation of Interactor
class	XmlBasicInteractionComplexWrapper	Wrapper of basic interactions If we add new modelled participants/remove participants, they will be added/removed from the list of participants of the wrapped interaction.
class	XmlBioactiveEntity	Xml implementation of BioactiveEntity
class	XmlComplex	Xml implementation of ModelledInteraction
class	XmlGene	Xml implementation of a Gene
class	XmlInteractionEvidenceComplexWrapper	Xml wrapper for interaction evidences used as complex
class	XmlInteractor	The Xml implementation of Interactor
class	XmlInteractorPool	Xml implementation for InteractorSet
class	XmlModelledInteractionComplexWrapper	Wrapper for complexes that were loaded as abstract interactions
class	XmlMolecule	Xml implementation of molecule
class	XmlNucleicAcid	Xml implementation of Nucleic acid
class	XmlPolymer	Xml implementation of Polymer
class	XmlProtein	Xml implementation of protein

Methods in psidev.psi.mi.jami.xml.model.extension.xml253 that return Interactor

Modifier and Type	Method	Description
Interactor	AbstractXmlEntity.getInteractor()	Getter for the field interactor.
Interactor	XmlExperimentalParticipantCandidateWrapper.getInteractor()	The molecule/complex of molecules which interacts.
Interactor	XmlParticipantCandidateWrapper.getInteractor()	The molecule/complex of molecules which interacts.
Interactor	XmlParticipantEvidenceWrapper.getInteractor()	The molecule/complex of molecules which interacts.
Interactor	XmlParticipantWrapper.getInteractor()	The molecule/complex of molecules which interacts.

Methods in psidev.psi.mi.jami.xml.model.extension.xml253 that return types with arguments of type Interactor

Modifier and Type	Method	Description
Iterator<Interactor>	XmlInteractorPool.iterator()	iterator.

Methods in psidev.psi.mi.jami.xml.model.extension.xml253 with parameters of type Interactor

Modifier and Type	Method	Description
boolean	XmlInteractorPool.add(Interactor interactor)	add.
void	AbstractXmlParticipantPool.onInteractorUpdate(Entity entity, Interactor oldInteractor)	onInteractorUpdate
void	AbstractXmlEntity.setInteractor(Interactor interactor)	Sets the interactor
void	AbstractXmlParticipantPool.setInteractor(Interactor interactor)	Sets the interactor
void	XmlExperimentalParticipantCandidateWrapper.setInteractor(Interactor interactor)	Sets the interactor
void	XmlParticipantCandidateWrapper.setInteractor(Interactor interactor)	Sets the interactor
void	XmlParticipantEvidenceWrapper.setInteractor(Interactor interactor)	Sets the interactor
void	XmlParticipantWrapper.setInteractor(Interactor interactor)	Sets the interactor

Method parameters in psidev.psi.mi.jami.xml.model.extension.xml253 with type arguments of type Interactor

Modifier and Type	Method	Description
boolean	XmlInteractorPool.addAll(Collection<? extends Interactor> interactors)
protected void	XmlInteractorPool.initialiseInteractorCandidatesSetWith(Set<Interactor> interactorCandidates)	initialiseInteractorCandidatesSetWith.

Constructors in psidev.psi.mi.jami.xml.model.extension.xml253 with parameters of type Interactor

Constructor	Description
AbstractXmlEntity(Interactor interactor)	Constructor for AbstractXmlEntity.
AbstractXmlEntity(Interactor interactor, Stoichiometry stoichiometry)	Constructor for AbstractXmlEntity.
AbstractXmlParticipant(Interactor interactor)	Constructor for AbstractXmlParticipant.
AbstractXmlParticipant(Interactor interactor, CvTerm bioRole)	Constructor for AbstractXmlParticipant.
AbstractXmlParticipant(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for AbstractXmlParticipant.
AbstractXmlParticipant(Interactor interactor, Stoichiometry stoichiometry)	Constructor for AbstractXmlParticipant.
XmlExperimentalParticipantCandidate(Interactor interactor)	Constructor for XmlExperimentalParticipantCandidate.
XmlExperimentalParticipantCandidate(Interactor interactor, Stoichiometry stoichiometry)	Constructor for XmlExperimentalParticipantCandidate.
XmlModelledParticipant(Interactor interactor)	Constructor for XmlModelledParticipant.
XmlModelledParticipant(Interactor interactor, CvTerm bioRole)	Constructor for XmlModelledParticipant.
XmlModelledParticipant(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for XmlModelledParticipant.
XmlModelledParticipant(Interactor interactor, Stoichiometry stoichiometry)	Constructor for XmlModelledParticipant.
XmlModelledParticipantCandidate(Interactor interactor)	Constructor for XmlModelledParticipantCandidate.
XmlModelledParticipantCandidate(Interactor interactor, Stoichiometry stoichiometry)	Constructor for XmlModelledParticipantCandidate.
XmlParticipant(Interactor interactor)	Constructor for XmlParticipant.
XmlParticipant(Interactor interactor, CvTerm bioRole)	Constructor for XmlParticipant.
XmlParticipant(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for XmlParticipant.
XmlParticipant(Interactor interactor, Stoichiometry stoichiometry)	Constructor for XmlParticipant.
XmlParticipantEvidence(Interactor interactor)	Constructor for XmlParticipantEvidence.
XmlParticipantEvidence(Interactor interactor, CvTerm bioRole)	Constructor for XmlParticipantEvidence.
XmlParticipantEvidence(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for XmlParticipantEvidence.
XmlParticipantEvidence(Interactor interactor, Stoichiometry stoichiometry)	Constructor for XmlParticipantEvidence.

Uses of Interactor in psidev.psi.mi.jami.xml.model.extension.xml254

Classes in psidev.psi.mi.jami.xml.model.extension.xml254 that implement Interactor

Modifier and Type	Class	Description
class	AbstractXmlComplex	Xml implementation for complex
class	AbstractXmlInteractor	The Xml implementation of Interactor
class	DefaultXmlComplex	Xml implementation for complex
class	DefaultXmlInteractor	The Xml implementation of Interactor
class	XmlBasicInteractionComplexWrapper	Wrapper of basic interactions If we add new modelled participants/remove participants, they will be added/removed from the list of participants of the wrapped interaction.
class	XmlBioactiveEntity	Xml implementation of BioactiveEntity
class	XmlComplex	Xml implementation of ModelledInteraction
class	XmlGene	Xml implementation of a Gene
class	XmlInteractionEvidenceComplexWrapper	Xml wrapper for interaction evidences used as complex
class	XmlInteractor	The Xml implementation of Interactor
class	XmlInteractorPool	Xml implementation for InteractorSet
class	XmlModelledInteractionComplexWrapper	Wrapper for complexes that were loaded as abstract interactions
class	XmlMolecule	Xml implementation of molecule
class	XmlNucleicAcid	Xml implementation of Nucleic acid
class	XmlPolymer	Xml implementation of Polymer
class	XmlProtein	Xml implementation of protein

Methods in psidev.psi.mi.jami.xml.model.extension.xml254 that return Interactor

Modifier and Type	Method	Description
Interactor	AbstractXmlEntity.getInteractor()	Getter for the field interactor.
Interactor	XmlExperimentalParticipantCandidateWrapper.getInteractor()	The molecule/complex of molecules which interacts.
Interactor	XmlParticipantCandidateWrapper.getInteractor()	The molecule/complex of molecules which interacts.
Interactor	XmlParticipantEvidenceWrapper.getInteractor()	The molecule/complex of molecules which interacts.
Interactor	XmlParticipantWrapper.getInteractor()	The molecule/complex of molecules which interacts.

Methods in psidev.psi.mi.jami.xml.model.extension.xml254 that return types with arguments of type Interactor

Modifier and Type	Method	Description
Iterator<Interactor>	XmlInteractorPool.iterator()	iterator.

Methods in psidev.psi.mi.jami.xml.model.extension.xml254 with parameters of type Interactor

Modifier and Type	Method	Description
boolean	XmlInteractorPool.add(Interactor interactor)	add.
void	AbstractXmlParticipantPool.onInteractorUpdate(Entity entity, Interactor oldInteractor)	onInteractorUpdate
void	AbstractXmlEntity.setInteractor(Interactor interactor)	Sets the interactor
void	AbstractXmlParticipantPool.setInteractor(Interactor interactor)	Sets the interactor
void	XmlExperimentalParticipantCandidateWrapper.setInteractor(Interactor interactor)	Sets the interactor
void	XmlParticipantCandidateWrapper.setInteractor(Interactor interactor)	Sets the interactor
void	XmlParticipantEvidenceWrapper.setInteractor(Interactor interactor)	Sets the interactor
void	XmlParticipantWrapper.setInteractor(Interactor interactor)	Sets the interactor

Method parameters in psidev.psi.mi.jami.xml.model.extension.xml254 with type arguments of type Interactor

Modifier and Type	Method	Description
boolean	XmlInteractorPool.addAll(Collection<? extends Interactor> interactors)
protected void	XmlInteractorPool.initialiseInteractorCandidatesSetWith(Set<Interactor> interactorCandidates)	initialiseInteractorCandidatesSetWith.

Constructors in psidev.psi.mi.jami.xml.model.extension.xml254 with parameters of type Interactor

Constructor	Description
AbstractXmlEntity(Interactor interactor)	Constructor for AbstractXmlEntity.
AbstractXmlEntity(Interactor interactor, Stoichiometry stoichiometry)	Constructor for AbstractXmlEntity.
AbstractXmlParticipant(Interactor interactor)	Constructor for AbstractXmlParticipant.
AbstractXmlParticipant(Interactor interactor, CvTerm bioRole)	Constructor for AbstractXmlParticipant.
AbstractXmlParticipant(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for AbstractXmlParticipant.
AbstractXmlParticipant(Interactor interactor, Stoichiometry stoichiometry)	Constructor for AbstractXmlParticipant.
XmlExperimentalParticipantCandidate(Interactor interactor)	Constructor for XmlExperimentalParticipantCandidate.
XmlExperimentalParticipantCandidate(Interactor interactor, Stoichiometry stoichiometry)	Constructor for XmlExperimentalParticipantCandidate.
XmlModelledParticipant(Interactor interactor)	Constructor for XmlModelledParticipant.
XmlModelledParticipant(Interactor interactor, CvTerm bioRole)	Constructor for XmlModelledParticipant.
XmlModelledParticipant(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for XmlModelledParticipant.
XmlModelledParticipant(Interactor interactor, Stoichiometry stoichiometry)	Constructor for XmlModelledParticipant.
XmlModelledParticipantCandidate(Interactor interactor)	Constructor for XmlModelledParticipantCandidate.
XmlModelledParticipantCandidate(Interactor interactor, Stoichiometry stoichiometry)	Constructor for XmlModelledParticipantCandidate.
XmlParticipant(Interactor interactor)	Constructor for XmlParticipant.
XmlParticipant(Interactor interactor, CvTerm bioRole)	Constructor for XmlParticipant.
XmlParticipant(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for XmlParticipant.
XmlParticipant(Interactor interactor, Stoichiometry stoichiometry)	Constructor for XmlParticipant.
XmlParticipantEvidence(Interactor interactor)	Constructor for XmlParticipantEvidence.
XmlParticipantEvidence(Interactor interactor, CvTerm bioRole)	Constructor for XmlParticipantEvidence.
XmlParticipantEvidence(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for XmlParticipantEvidence.
XmlParticipantEvidence(Interactor interactor, Stoichiometry stoichiometry)	Constructor for XmlParticipantEvidence.

Uses of Interactor in psidev.psi.mi.jami.xml.model.extension.xml300

Subinterfaces of Interactor in psidev.psi.mi.jami.xml.model.extension.xml300

Modifier and Type	Interface	Description
interface	ExtendedPsiXmlModelledInteraction	Extended interaction for PSI-XML 2,5 standards

Classes in psidev.psi.mi.jami.xml.model.extension.xml300 that implement Interactor

Modifier and Type	Class	Description
class	AbstractXmlComplex	Xml implementation for complex
class	AbstractXmlInteractor	The Xml implementation of Interactor
class	DefaultXmlComplex	Xml implementation for complex
class	DefaultXmlInteractor	The Xml implementation of Interactor
class	XmlBasicInteractionComplexWrapper	Wrapper of basic interactions If we add new modelled participants/remove participants, they will be added/removed from the list of participants of the wrapped interaction.
class	XmlBioactiveEntity	Xml implementation of BioactiveEntity
class	XmlComplex	Xml implementation of ModelledInteraction
class	XmlGene	Xml implementation of a Gene
class	XmlInteractionEvidenceComplexWrapper	Xml wrapper for interaction evidences used as complex
class	XmlInteractor	The Xml implementation of Interactor
class	XmlInteractorPool	Xml implementation for InteractorSet
class	XmlModelledInteraction	Xml 3.0.0 implementation of ModelledInteraction
class	XmlModelledInteractionComplexWrapper	Wrapper for complexes that were loaded as abstract interactions
class	XmlMolecule	Xml implementation of molecule
class	XmlNucleicAcid	Xml implementation of Nucleic acid
class	XmlPolymer	Xml implementation of Polymer
class	XmlProtein	Xml implementation of protein

Methods in psidev.psi.mi.jami.xml.model.extension.xml300 that return Interactor

Modifier and Type	Method	Description
Interactor	AbstractXmlEntity.getInteractor()	Getter for the field interactor.
Interactor	XmlExperimentalParticipantCandidateWrapper.getInteractor()	The molecule/complex of molecules which interacts.
Interactor	XmlParticipantCandidateWrapper.getInteractor()	The molecule/complex of molecules which interacts.
Interactor	XmlParticipantEvidenceWrapper.getInteractor()	The molecule/complex of molecules which interacts.
Interactor	XmlParticipantWrapper.getInteractor()	The molecule/complex of molecules which interacts.

Methods in psidev.psi.mi.jami.xml.model.extension.xml300 that return types with arguments of type Interactor

Modifier and Type	Method	Description
Iterator<Interactor>	XmlInteractorPool.iterator()	iterator.

Methods in psidev.psi.mi.jami.xml.model.extension.xml300 with parameters of type Interactor

Modifier and Type	Method	Description
boolean	XmlInteractorPool.add(Interactor interactor)	add.
void	AbstractXmlParticipantPool.onInteractorUpdate(Entity entity, Interactor oldInteractor)	onInteractorUpdate
void	AbstractXmlEntity.setInteractor(Interactor interactor)	Sets the interactor
void	AbstractXmlParticipantPool.setInteractor(Interactor interactor)	Sets the interactor
void	XmlExperimentalParticipantCandidateWrapper.setInteractor(Interactor interactor)	Sets the interactor
void	XmlParticipantCandidateWrapper.setInteractor(Interactor interactor)	Sets the interactor
void	XmlParticipantEvidenceWrapper.setInteractor(Interactor interactor)	Sets the interactor
void	XmlParticipantWrapper.setInteractor(Interactor interactor)	Sets the interactor

Method parameters in psidev.psi.mi.jami.xml.model.extension.xml300 with type arguments of type Interactor

Modifier and Type	Method	Description
boolean	XmlInteractorPool.addAll(Collection<? extends Interactor> interactors)
protected void	XmlInteractorPool.initialiseInteractorCandidatesSetWith(Set<Interactor> interactorCandidates)	initialiseInteractorCandidatesSetWith.

Constructors in psidev.psi.mi.jami.xml.model.extension.xml300 with parameters of type Interactor

Constructor	Description
AbstractXmlEntity(Interactor interactor)	Constructor for AbstractXmlEntity.
AbstractXmlEntity(Interactor interactor, Stoichiometry stoichiometry)	Constructor for AbstractXmlEntity.
AbstractXmlParticipant(Interactor interactor)	Constructor for AbstractXmlParticipant.
AbstractXmlParticipant(Interactor interactor, CvTerm bioRole)	Constructor for AbstractXmlParticipant.
AbstractXmlParticipant(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for AbstractXmlParticipant.
AbstractXmlParticipant(Interactor interactor, Stoichiometry stoichiometry)	Constructor for AbstractXmlParticipant.
XmlExperimentalParticipantCandidate(Interactor interactor)	Constructor for XmlExperimentalParticipantCandidate.
XmlExperimentalParticipantCandidate(Interactor interactor, Stoichiometry stoichiometry)	Constructor for XmlExperimentalParticipantCandidate.
XmlModelledParticipant(Interactor interactor)	Constructor for XmlModelledParticipant.
XmlModelledParticipant(Interactor interactor, CvTerm bioRole)	Constructor for XmlModelledParticipant.
XmlModelledParticipant(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for XmlModelledParticipant.
XmlModelledParticipant(Interactor interactor, Stoichiometry stoichiometry)	Constructor for XmlModelledParticipant.
XmlModelledParticipantCandidate(Interactor interactor)	Constructor for XmlModelledParticipantCandidate.
XmlModelledParticipantCandidate(Interactor interactor, Stoichiometry stoichiometry)	Constructor for XmlModelledParticipantCandidate.
XmlParticipant(Interactor interactor)	Constructor for XmlParticipant.
XmlParticipant(Interactor interactor, CvTerm bioRole)	Constructor for XmlParticipant.
XmlParticipant(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for XmlParticipant.
XmlParticipant(Interactor interactor, Stoichiometry stoichiometry)	Constructor for XmlParticipant.
XmlParticipantEvidence(Interactor interactor)	Constructor for XmlParticipantEvidence.
XmlParticipantEvidence(Interactor interactor, CvTerm bioRole)	Constructor for XmlParticipantEvidence.
XmlParticipantEvidence(Interactor interactor, CvTerm bioRole, Stoichiometry stoichiometry)	Constructor for XmlParticipantEvidence.
XmlParticipantEvidence(Interactor interactor, Stoichiometry stoichiometry)	Constructor for XmlParticipantEvidence.

Uses of Interactor in psidev.psi.mi.jami.xml.model.reference.xml253

Classes in psidev.psi.mi.jami.xml.model.reference.xml253 that implement Interactor

Modifier and Type	Class	Description
class	AbstractComplexRef	Abstract class for references to a complex
class	AbstractInteractorRef	An implementation of XmlIdReference for interactors

Methods in psidev.psi.mi.jami.xml.model.reference.xml253 that return Interactor

Modifier and Type	Method	Description
Interactor	AbstractEntityRef.getInteractor()	getInteractor.

Methods in psidev.psi.mi.jami.xml.model.reference.xml253 with parameters of type Interactor

Modifier and Type	Method	Description
void	AbstractEntityRef.setInteractor(Interactor interactor)	Sets the interactor

Uses of Interactor in psidev.psi.mi.jami.xml.model.reference.xml254

Classes in psidev.psi.mi.jami.xml.model.reference.xml254 that implement Interactor

Modifier and Type	Class	Description
class	AbstractComplexRef	Abstract class for references to a complex
class	AbstractInteractorRef	An implementation of XmlIdReference for interactors

Methods in psidev.psi.mi.jami.xml.model.reference.xml254 that return Interactor

Modifier and Type	Method	Description
Interactor	AbstractEntityRef.getInteractor()	getInteractor.

Methods in psidev.psi.mi.jami.xml.model.reference.xml254 with parameters of type Interactor

Modifier and Type	Method	Description
void	AbstractEntityRef.setInteractor(Interactor interactor)	Sets the interactor

Uses of Interactor in psidev.psi.mi.jami.xml.model.reference.xml300

Classes in psidev.psi.mi.jami.xml.model.reference.xml300 that implement Interactor

Modifier and Type	Class	Description
class	AbstractComplexRef	Abstract class for references to a complex
class	AbstractInteractorRef	An implementation of XmlIdReference for interactors

Methods in psidev.psi.mi.jami.xml.model.reference.xml300 that return Interactor

Modifier and Type	Method	Description
Interactor	AbstractEntityRef.getInteractor()	getInteractor.

Methods in psidev.psi.mi.jami.xml.model.reference.xml300 with parameters of type Interactor

Modifier and Type	Method	Description
void	AbstractEntityRef.setInteractor(Interactor interactor)	Sets the interactor

Uses of Interactor in psidev.psi.mi.jami.xml.model.xml253

Methods in psidev.psi.mi.jami.xml.model.xml253 that return types with arguments of type Interactor

Modifier and Type	Method	Description
List<Interactor>	AbstractEntry.JAXBInteractorsWrapper.getJAXBInteractors()

Uses of Interactor in psidev.psi.mi.jami.xml.model.xml254

Methods in psidev.psi.mi.jami.xml.model.xml254 that return types with arguments of type Interactor

Modifier and Type	Method	Description
List<Interactor>	AbstractEntry.JAXBInteractorsWrapper.getJAXBInteractors()

Uses of Interactor in psidev.psi.mi.jami.xml.model.xml30

Methods in psidev.psi.mi.jami.xml.model.xml30 that return types with arguments of type Interactor

Modifier and Type	Method	Description
List<Interactor>	AbstractEntry.JAXBInteractorsWrapper.getJAXBInteractors()