Uses of Interface
psidev.psi.mi.jami.datasource.InteractionWriter

Packages that use InteractionWriter

Package	Description
psidev.psi.mi.jami.factory
psidev.psi.mi.jami.html
psidev.psi.mi.jami.json.binary
psidev.psi.mi.jami.json.nary
psidev.psi.mi.jami.tab.extension.factory
psidev.psi.mi.jami.tab.io.writer
psidev.psi.mi.jami.tab.io.writer.extended
psidev.psi.mi.jami.xml.io.writer
psidev.psi.mi.jami.xml.io.writer.compact
psidev.psi.mi.jami.xml.io.writer.compact.extended
psidev.psi.mi.jami.xml.io.writer.expanded
psidev.psi.mi.jami.xml.io.writer.expanded.extended
psidev.psi.mi.jami.xml.model.extension.factory

Uses of InteractionWriter in psidev.psi.mi.jami.factory

Methods in psidev.psi.mi.jami.factory that return InteractionWriter

Modifier and Type	Method	Description
InteractionWriter	InteractionWriterFactory.getInteractionWriterWith(Map<String,Object> requiredOptions)	getInteractionWriterWith

Method parameters in psidev.psi.mi.jami.factory with type arguments of type InteractionWriter

Modifier and Type	Method	Description
void	InteractionWriterFactory.registerDataSourceWriter(Class<? extends InteractionWriter> dataSourceClass, Map<String,Object> supportedOptions)	Register a datasource writer with options in this factory
void	InteractionWriterFactory.removeDataSourceWriter(Class<? extends InteractionWriter> dataSourceClass)	Remove the interactionDataSourceWriter from this factory

Uses of InteractionWriter in psidev.psi.mi.jami.html

Classes in psidev.psi.mi.jami.html that implement InteractionWriter

Modifier and Type	Class	Description
class	AbstractMIHtmlWriter<T extends Interaction,P extends Participant,F extends Feature>	Abstract class for MI HTML writer
class	LightMIHtmlWriter	Writer for light interactions
class	MIEvidenceHtmlWriter	HTML writer for PSI-MI interaction evidences.
class	MIHtmlWriter	MI writer for a mix of interactions
class	MIModelledHtmlWriter	Writer for modelled interactions

Uses of InteractionWriter in psidev.psi.mi.jami.json.binary

Classes in psidev.psi.mi.jami.json.binary that implement InteractionWriter

Modifier and Type	Class	Description
class	AbstractMIJsonBinaryWriter<I extends BinaryInteraction>	Abstract JSON writer for binary interactions (binary json format)
class	AbstractMIJsonWriter<I extends Interaction,B extends BinaryInteraction>	The jsonWriter which writes the interactions
class	LightMIJsonBinaryWriter	JSON writer for light interactions
class	LightMIJsonWriter	The jsonWriter which writes the light interactions
class	MIJsonBinaryEvidenceWriter	JSON writer for InteractionEvidences
class	MIJsonBinaryWriter	JSON writer for mix of modelled and experimental interactions and
class	MIJsonEvidenceWriter	The jsonWriter which writes the interaction evidences
class	MIJsonModelledBinaryWriter	JSON writer for ModelledInteractions
class	MIJsonModelledWriter	The jsonWriter which writes the modelled interactions
class	MIJsonWriter	The jsonWriter which writes all interactions

Uses of InteractionWriter in psidev.psi.mi.jami.json.nary

Classes in psidev.psi.mi.jami.json.nary that implement InteractionWriter

Modifier and Type	Class	Description
class	AbstractMIJsonWriter<I extends Interaction>	Abstract JSON writer for interactions (n-ary json format)
class	LightMIJsonWriter	Abstract JSON writer for interactions (n-ary json format)
class	MIJsonEvidenceWriter	Abstract JSON writer for interactions (n-ary json format)
class	MIJsonModelledWriter	Abstract JSON writer for interactions (n-ary json format)
class	MIJsonWriter	The jsonWriter which writes the all interactions

Uses of InteractionWriter in psidev.psi.mi.jami.tab.extension.factory

Methods in psidev.psi.mi.jami.tab.extension.factory that return InteractionWriter

Modifier and Type	Method	Description
InteractionWriter	MitabWriterFactory.createMitabBinaryWriter(InteractionCategory interactionCategory, MitabVersion version, boolean extended)	createMitabBinaryWriter.
InteractionWriter	MitabWriterFactory.createMitabWriter(InteractionCategory interactionCategory, ComplexType complexType, MitabVersion version, boolean extended)	createMitabWriter.
InteractionWriter	MitabWriterFactory.createMitabWriter(InteractionCategory interactionCategory, MitabVersion version, boolean extended)	createMitabWriter.

Uses of InteractionWriter in psidev.psi.mi.jami.tab.io.writer

Classes in psidev.psi.mi.jami.tab.io.writer that implement InteractionWriter

Modifier and Type	Class	Description
class	AbstractMitab25BinaryWriter<T extends BinaryInteraction,P extends Participant>	Abstract class for BinaryInteraction writer.
class	AbstractMitab26BinaryWriter<T extends BinaryInteraction,P extends Participant>	Abstract class for MITAB 2.6 writer of binary interactions
class	AbstractMitab27BinaryWriter<T extends BinaryInteraction,P extends Participant>	Abstract mitab 2.7 writer for binary interactions
class	AbstractMitab28BinaryWriter<T extends BinaryInteraction,P extends Participant>	Abstract mitab 2.8 writer for binary interactions
class	AbstractMitabWriter<T extends Interaction,B extends BinaryInteraction,P extends Participant>	Abstract writer for Mitab 2.5.
class	DefaultMitabWriter	Generic writer for MITAB
class	LightMitab25BinaryWriter	Mitab 2.5 writer for light binary interactions (no experimental details)
class	LightMitab25Writer	The mitab 2.5 writer for light Interaction (no experimental details)
class	LightMitab26BinaryWriter	Mitab 2.6 writer for light binary interactions
class	LightMitab26Writer	Mitab 2.6 writer for light interaction
class	LightMitab27BinaryWriter	Mitab 2.7 writer for light binary interactions
class	LightMitab27Writer	Mitab 2.7 writer for light interaction
class	LightMitab28BinaryWriter	Mitab 2.8 writer for light binary interactions
class	LightMitab28Writer	Mitab 2.8 writer for light interaction
class	Mitab25BinaryEvidenceWriter	Mitab 2.5 writer for binary interaction evidences
class	Mitab25BinaryWriter	The basic Mitab 2.5 writer for BinaryInteraction
class	Mitab25EvidenceWriter	The mitab 2.5 writer for interaction evidence
class	Mitab25ModelledBinaryWriter	Mitab 2.5 writer for modelled binary interactions
class	Mitab25ModelledWriter	The mitab 2.5 writer for ModelledInteraction
class	Mitab25Writer	The simple MITAB 2.5 writer will write interactions using the JAMI interfaces.
class	Mitab26BinaryEvidenceWriter	Mitab 2.6 writer for binary interaction evidences
class	Mitab26BinaryWriter	The basic Mitab 2.6 writer for BinaryInteraction
class	Mitab26EvidenceWriter	Mitab 2.6 writer for interaction evidence
class	Mitab26ModelledBinaryWriter	Mitab 2.6 writer for modelled binary interactions
class	Mitab26ModelledWriter	Mitab 2.6 writer for Modelled interaction
class	Mitab26Writer	The simple MITAB 2.6 writer will write interactions using the JAMI interfaces.
class	Mitab27BinaryEvidenceWriter	Mitab 2.7 writer for binary interaction evidences
class	Mitab27BinaryWriter	The basic Mitab 2.7 writer for BinaryInteraction
class	Mitab27EvidenceWriter	Mitab 2.7 writer for interaction evidence
class	Mitab27ModelledBinaryWriter	Mitab 2.7 writer for modelled binary interactions
class	Mitab27ModelledWriter	Mitab 2.7 writer for Modelled interaction
class	Mitab27Writer	The simple MITAB 2.7 writer will write interactions using the JAMI interfaces.
class	Mitab28BinaryEvidenceWriter	Mitab 2.8 writer for binary interaction evidences
class	Mitab28BinaryWriter	The basic Mitab 2.8 writer for BinaryInteraction
class	Mitab28EvidenceWriter	Mitab 2.8 writer for interaction evidence
class	Mitab28ModelledBinaryWriter	Mitab 2.8 writer for modelled binary interactions
class	Mitab28ModelledWriter	Mitab 2.8 writer for Modelled interaction
class	Mitab28Writer	The simple MITAB 2.8 writer will write interactions using the JAMI interfaces.

Methods in psidev.psi.mi.jami.tab.io.writer that return InteractionWriter

Modifier and Type	Method	Description
protected InteractionWriter	DefaultMitabWriter.getDelegate()	Getter for the field delegate.

Methods in psidev.psi.mi.jami.tab.io.writer with parameters of type InteractionWriter

Modifier and Type	Method	Description
protected void	DefaultMitabWriter.setDelegate(InteractionWriter delegate)	Setter for the field delegate.

Uses of InteractionWriter in psidev.psi.mi.jami.tab.io.writer.extended

Classes in psidev.psi.mi.jami.tab.io.writer.extended that implement InteractionWriter

Modifier and Type	Class	Description
class	Mitab25BinaryEvidenceWriter	Extended Mitab 2.5 writer for binary interaction evidences
class	Mitab25BinaryWriter	The basic Mitab 2.5 writer for BinaryInteraction
class	Mitab25EvidenceWriter	The mitab 2.5 writer for interaction evidence
class	Mitab25ModelledBinaryWriter	Mitab 2.5 writer for modelled binary interactions
class	Mitab25ModelledWriter	The mitab 2.5 writer for ModelledInteraction
class	Mitab25Writer	The simple MITAB 2.5 writer will write interactions using the JAMI interfaces.
class	Mitab26BinaryEvidenceWriter	Mitab 2.6 writer for binary interaction evidences
class	Mitab26BinaryWriter	The basic Mitab 2.6 writer for BinaryInteraction
class	Mitab26EvidenceWriter	Mitab 2.6 writer for interaction evidence
class	Mitab26ModelledBinaryWriter	Mitab 2.6 writer for modelled binary interactions
class	Mitab26ModelledWriter	Mitab 2.6 writer for Modelled interaction
class	Mitab26Writer	The simple MITAB 2.6 writer will write interactions using the JAMI interfaces.
class	Mitab27BinaryEvidenceWriter	Mitab 2.7 writer for binary interaction evidences
class	Mitab27BinaryWriter	The basic Mitab 2.7 writer for BinaryInteraction
class	Mitab27EvidenceWriter	Mitab 2.7 writer for interaction evidence
class	Mitab27ModelledBinaryWriter	Mitab 2.7 writer for modelled binary interactions
class	Mitab27ModelledWriter	Mitab 2.7 writer for Modelled interaction
class	Mitab27Writer	The simple MITAB 2.7 writer will write interactions using the JAMI interfaces.
class	Mitab28BinaryEvidenceWriter	Mitab 2.8 writer for binary interaction evidences
class	Mitab28BinaryWriter	The basic Mitab 2.8 writer for BinaryInteraction
class	Mitab28EvidenceWriter	Mitab 2.8 writer for interaction evidence
class	Mitab28ModelledBinaryWriter	Mitab 2.8 writer for modelled binary interactions
class	Mitab28ModelledWriter	Mitab 2.8 writer for Modelled interaction
class	Mitab28Writer	The simple MITAB 2.8 writer will write interactions using the JAMI interfaces.

Uses of InteractionWriter in psidev.psi.mi.jami.xml.io.writer

Classes in psidev.psi.mi.jami.xml.io.writer that implement InteractionWriter

Modifier and Type	Class	Description
class	AbstractXmlWriter<T extends Interaction>	Abstract class for XML writer of interactions
class	DefaultXmlWriter	Generic writer for PSI-MI XML

Methods in psidev.psi.mi.jami.xml.io.writer that return InteractionWriter

Modifier and Type	Method	Description
protected InteractionWriter	DefaultXmlWriter.getDelegate()	Getter for the field delegate.

Methods in psidev.psi.mi.jami.xml.io.writer with parameters of type InteractionWriter

Modifier and Type	Method	Description
protected void	DefaultXmlWriter.setDelegate(InteractionWriter delegate)	Setter for the field delegate.

Uses of InteractionWriter in psidev.psi.mi.jami.xml.io.writer.compact

Classes in psidev.psi.mi.jami.xml.io.writer.compact that implement InteractionWriter

Modifier and Type	Class	Description
class	AbstractCompactXmlMixWriter<I extends Interaction,M extends ModelledInteraction,E extends InteractionEvidence>	Abstract class for a compact PSI-XML writer of mixed interactions
class	AbstractCompactXmlWriter<T extends Interaction>	Abstract class for Compact XML writers.
class	CompactXmlBinaryEvidenceWriter	Compact PSI-XML writer for binary interaction evidences (full experimental evidences)
class	CompactXmlBinaryWriter	Compact PSI-XML writer for a mix of binary interactions
class	CompactXmlComplexWriter	Compact PSI-XML writer for named biological complexes (no experimental evidences).
class	CompactXmlEvidenceWriter	Compact PSI-XML writer for interaction evidences (full experimental evidences)
class	CompactXmlModelledBinaryWriter	Compact PSI-XML writer for modelled binary interactions (no experimental evidences)
class	CompactXmlModelledWriter	Compact PSI-XML writer for abstract interactions (no experimental evidences)
class	CompactXmlNamedBinaryEvidenceWriter	Compact PSI-XML writer for named binary interaction evidences (full experimental evidences) Participants, features and experiments also have expanded names to write
class	CompactXmlNamedBinaryWriter	Compact PSI-XML writer for a mix of named binary interactions
class	CompactXmlNamedEvidenceWriter	Compact PSI-XML writer for named interaction evidences (full experimental evidences) Participants, features and experiments also have expanded names to write
class	CompactXmlNamedModelledBinaryWriter	Compact PSI-XML writer for named modelled binary interactions (no experimental evidences).
class	CompactXmlNamedModelledWriter	Compact PSI-XML writer for named abstract interactions (no experimental evidences).
class	CompactXmlNamedWriter	Compact PSI-XML writer for a mix of named interactions
class	CompactXmlWriter	Compact PSI-XML writer for a mix of interactions
class	LightCompactXmlBinaryWriter	Compact PSI-XML writer for light binary interactions (no experimental evidences)
class	LightCompactXmlNamedBinaryWriter	Compact PSI-XML writer for light binary interactions (no experimental evidences) having names.
class	LightCompactXmlNamedWriter	Compact PSI-XML writer for light interactions (no experimental evidences) having names.
class	LightCompactXmlWriter	Compact PSI-XML writer for light interactions (no experimental evidences)

Uses of InteractionWriter in psidev.psi.mi.jami.xml.io.writer.compact.extended

Classes in psidev.psi.mi.jami.xml.io.writer.compact.extended that implement InteractionWriter

Modifier and Type	Class	Description
class	CompactXmlBinaryEvidenceWriter	Compact PSI-XML writer for expanded binary interaction evidences (full experimental evidences)
class	CompactXmlBinaryWriter	Compact PSI-XML writer for a mix of expanded binary interactions
class	CompactXmlComplexWriter	Compact PSI-XML writer for biological complexes (no experimental evidences)
class	CompactXmlEvidenceWriter	Compact PSI-XML writer for expanded interaction evidences (full experimental evidences)
class	CompactXmlModelledBinaryWriter	Compact PSI-XML writer for modelled binary interactions (no experimental evidences)
class	CompactXmlModelledWriter	Compact PSI-XML writer for abstract interactions (no experimental evidences)
class	CompactXmlWriter	Compact PSI-XML writer for a mix of interactions
class	LightCompactXmlBinaryWriter	Compact PSI-XML writer for light binary interactions (no experimental evidences)
class	LightCompactXmlWriter	Compact PSI-XML writer for light interactions (no experimental evidences)

Uses of InteractionWriter in psidev.psi.mi.jami.xml.io.writer.expanded

Classes in psidev.psi.mi.jami.xml.io.writer.expanded that implement InteractionWriter

Modifier and Type	Class	Description
class	AbstractExpandedXmlMixWriter<I extends Interaction,M extends ModelledInteraction,E extends InteractionEvidence>	Abstract class for an expanded PSI-XML writer of mixed interactions
class	AbstractExpandedXmlWriter<T extends Interaction>	Abstract class for expanded PSI-xml writers
class	ExpandedXmlBinaryEvidenceWriter	Expanded PSI-XML writer for binary interaction evidences (full experimental evidences)
class	ExpandedXmlBinaryWriter	Expanded PSI-XML writer for a mix of binary interactions
class	ExpandedXmlComplexWriter	Expanded PSI-XML writer for biological complexes (no experimental evidences).
class	ExpandedXmlEvidenceWriter	Expanded PSI-XML writer for interaction evidences (full experimental evidences)
class	ExpandedXmlModelledBinaryWriter	Expanded PSI-XML writer for modelled binary interactions (no experimental evidences)
class	ExpandedXmlModelledWriter	Expanded PSI-XML writer for abstract interactions (no experimental evidences)
class	ExpandedXmlNamedBinaryEvidenceWriter	Expanded PSI-XML writer for named binary interaction evidences (full experimental evidences) Participants, features and experiments also have expanded names to write
class	ExpandedXmlNamedBinaryWriter	Expanded PSI-XML writer for a mix of named binary interactions
class	ExpandedXmlNamedEvidenceWriter	Expanded PSI-XML writer for named interaction evidences (full experimental evidences) Participants, features and experiments also have expanded names to write
class	ExpandedXmlNamedModelledBinaryWriter	Expanded PSI-XML writer for named modelled binary interactions (no experimental evidences).
class	ExpandedXmlNamedModelledWriter	Expanded PSI-XML writer for named abstract interactions (no experimental evidences).
class	ExpandedXmlNamedWriter	Expanded PSI-XML writer for a mix of named interactions
class	ExpandedXmlWriter	Expanded PSI-XML writer for a mix of interactions
class	LightExpandedXmlBinaryWriter	Expanded PSI-XML writer for light binary interactions (no experimental evidences)
class	LightExpandedXmlNamedBinaryWriter	Expanded PSI-XML writer for light binary interactions (no experimental evidences) having names.
class	LightExpandedXmlNamedWriter	Expanded PSI-XML writer for light interactions (no experimental evidences) having names.
class	LightExpandedXmlWriter	Expanded PSI-XML writer for light interactions (no experimental evidences)

Uses of InteractionWriter in psidev.psi.mi.jami.xml.io.writer.expanded.extended

Classes in psidev.psi.mi.jami.xml.io.writer.expanded.extended that implement InteractionWriter

Modifier and Type	Class	Description
class	ExpandedXmlBinaryEvidenceWriter	Expanded PSI-XML writer for expanded binary interaction evidences (full experimental evidences)
class	ExpandedXmlBinaryWriter	Expanded PSI-XML writer for a mix of expanded binary interactions
class	ExpandedXmlComplexWriter	Expanded PSI-XML writer for biological complexes (no experimental evidences)
class	ExpandedXmlEvidenceWriter	Expanded PSI-XML writer for expanded interaction evidences (full experimental evidences)
class	ExpandedXmlModelledBinaryWriter	Expanded PSI-XML writer for modelled binary interactions (no experimental evidences)
class	ExpandedXmlModelledWriter	Expanded PSI-XML writer for abstract interactions (no experimental evidences)
class	ExpandedXmlWriter	Expanded PSI-XML writer for a mix of interactions
class	LightExpandedXmlBinaryWriter	Expanded PSI-XML writer for light binary interactions (no experimental evidences)
class	LightExpandedXmlWriter	Expanded PSI-XML writer for light interactions (no experimental evidences)

Uses of InteractionWriter in psidev.psi.mi.jami.xml.model.extension.factory

Methods in psidev.psi.mi.jami.xml.model.extension.factory that return InteractionWriter

Modifier and Type	Method	Description
InteractionWriter	PsiXmlWriterFactory.createPsiXmlBinaryWriter(InteractionCategory interactionCategory, PsiXmlVersion version, PsiXmlType type, boolean extended, boolean named)	createPsiXmlBinaryWriter.
InteractionWriter	PsiXmlWriterFactory.createPsiXmlWriter(InteractionCategory interactionCategory, ComplexType complexType, PsiXmlType type, PsiXmlVersion version, boolean extended, boolean named)	createPsiXmlWriter.
InteractionWriter	PsiXmlWriterFactory.createPsiXmlWriter(InteractionCategory interactionCategory, PsiXmlType type, PsiXmlVersion version, boolean extended, boolean named)	createPsiXmlWriter.