Uses of Interface psidev.psi.mi.jami.datasource.FileSourceContext (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

Packages that use FileSourceContext
Package	Description
psidev.psi.mi.jami.crosslink.extension
psidev.psi.mi.jami.crosslink.extension.datasource
psidev.psi.mi.jami.crosslink.io.parser
psidev.psi.mi.jami.datasource
psidev.psi.mi.jami.listener
psidev.psi.mi.jami.listener.impl
psidev.psi.mi.jami.tab.extension
psidev.psi.mi.jami.tab.extension.datasource
psidev.psi.mi.jami.tab.listener
psidev.psi.mi.jami.xml.model
psidev.psi.mi.jami.xml.model.extension
psidev.psi.mi.jami.xml.model.extension.binary
psidev.psi.mi.jami.xml.model.extension.binary.xml253
psidev.psi.mi.jami.xml.model.extension.binary.xml254
psidev.psi.mi.jami.xml.model.extension.binary.xml30
psidev.psi.mi.jami.xml.model.extension.datasource
psidev.psi.mi.jami.xml.model.extension.xml253
psidev.psi.mi.jami.xml.model.extension.xml254
psidev.psi.mi.jami.xml.model.extension.xml300
psidev.psi.mi.jami.xml.model.reference
psidev.psi.mi.jami.xml.model.reference.xml253
psidev.psi.mi.jami.xml.model.reference.xml254
psidev.psi.mi.jami.xml.model.reference.xml300
psidev.psi.mi.jami.xml.model.xml253
psidev.psi.mi.jami.xml.model.xml254
psidev.psi.mi.jami.xml.model.xml30

Uses of FileSourceContext in psidev.psi.mi.jami.crosslink.extension

Classes in psidev.psi.mi.jami.crosslink.extension that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`CsvBinaryInteractionEvidence`	Crosslink CSV implementation of BinaryInteractionEvidence
`class`	`CsvExperimentalParticipantCandidate`	Crosslink CSV extension of ExperimentalParticipantCandidate.
`class`	`CsvExperimentalParticipantPool`	Crosslink CSV extension of ParticipantEvidencePool.
`class`	`CsvFeatureEvidence`	CrossLink CSV extension for FeatureEvidence
`class`	`CsvInteractionEvidence`	CSV extension for InteractionEvidence
`class`	`CsvParticipantEvidence`	Crosslink CSV extension of ParticipantEvidence.
`class`	`CsvProtein`	Crosslink CSV extension of Protein.
`class`	`CsvRange`	Crosslink CSV extension of Range It contains a FileSourceLocator
`class`	`CsvXref`	CSV extension for Xref.

Uses of FileSourceContext in psidev.psi.mi.jami.crosslink.extension.datasource

Methods in psidev.psi.mi.jami.crosslink.extension.datasource with parameters of type FileSourceContext
Modifier and Type	Method	Description
`void`	AbstractCsvSource.`onAliasWithoutName(FileSourceContext context)`	Listen to an event fired when an alias does not have a name
`void`	AbstractCsvStreamSource.`onAliasWithoutName(FileSourceContext context)`	Listen to an event fired when an alias does not have a name
`void`	CsvMixedEvidenceSource.`onAliasWithoutName(FileSourceContext context)`	Listen to an event fired when an alias does not have a name
`void`	CsvNaryEvidenceSource.`onAliasWithoutName(FileSourceContext context)`	Listen to an event fired when an alias does not have a name
`void`	AbstractCsvSource.`onAnnotationWithoutTopic(FileSourceContext context)`	Listen to an event fired when an annotation does not have a topic
`void`	AbstractCsvStreamSource.`onAnnotationWithoutTopic(FileSourceContext context)`	Listen to an event fired when an annotation does not have a topic
`void`	CsvMixedEvidenceSource.`onAnnotationWithoutTopic(FileSourceContext context)`	Listen to an event fired when an annotation does not have a topic
`void`	CsvNaryEvidenceSource.`onAnnotationWithoutTopic(FileSourceContext context)`	Listen to an event fired when an annotation does not have a topic
`void`	AbstractCsvSource.`onInteractionWithoutParticipants(Interaction interaction, FileSourceContext context)`	Listen to an event fired when an interaction is read and does not have any participants.
`void`	AbstractCsvStreamSource.`onInteractionWithoutParticipants(Interaction interaction, FileSourceContext context)`	Listen to an event fired when an interaction is read and does not have any participants.
`void`	CsvMixedEvidenceSource.`onInteractionWithoutParticipants(Interaction interaction, FileSourceContext context)`	Listen to an event fired when an interaction is read and does not have any participants.
`void`	CsvNaryEvidenceSource.`onInteractionWithoutParticipants(Interaction interaction, FileSourceContext context)`	Listen to an event fired when an interaction is read and does not have any participants.
`void`	AbstractCsvSource.`onInvalidOrganismTaxid(String taxid, FileSourceContext context)`	Listen to an event fired when an organism does not have a valid taxid (positive integer or -1, -2, -3, -4, -5)
`void`	AbstractCsvStreamSource.`onInvalidOrganismTaxid(String taxid, FileSourceContext context)`	Listen to an event fired when an organism does not have a valid taxid (positive integer or -1, -2, -3, -4, -5)
`void`	CsvMixedEvidenceSource.`onInvalidOrganismTaxid(String taxid, FileSourceContext context)`	Listen to an event fired when an organism does not have a valid taxid (positive integer or -1, -2, -3, -4, -5)
`void`	CsvNaryEvidenceSource.`onInvalidOrganismTaxid(String taxid, FileSourceContext context)`	Listen to an event fired when an organism does not have a valid taxid (positive integer or -1, -2, -3, -4, -5)
`void`	AbstractCsvSource.`onInvalidPosition(String message, FileSourceContext context)`	Listen to an event fired when a position is not valid
`void`	AbstractCsvStreamSource.`onInvalidPosition(String message, FileSourceContext context)`	Listen to an event fired when a position is not valid
`void`	CsvMixedEvidenceSource.`onInvalidPosition(String message, FileSourceContext context)`	Listen to an event fired when a position is not valid
`void`	CsvNaryEvidenceSource.`onInvalidPosition(String message, FileSourceContext context)`	Listen to an event fired when a position is not valid
`void`	AbstractCsvSource.`onInvalidRange(String message, FileSourceContext context)`	Listen to an event fired when a range is not valid
`void`	AbstractCsvStreamSource.`onInvalidRange(String message, FileSourceContext context)`	Listen to an event fired when a range is not valid
`void`	CsvMixedEvidenceSource.`onInvalidRange(String message, FileSourceContext context)`	Listen to an event fired when a range is not valid
`void`	CsvNaryEvidenceSource.`onInvalidRange(String message, FileSourceContext context)`	Listen to an event fired when a range is not valid
`void`	AbstractCsvSource.`onInvalidStoichiometry(String message, FileSourceContext context)`	Listen to an event fired when a stoichiometry is not valid
`void`	AbstractCsvStreamSource.`onInvalidStoichiometry(String message, FileSourceContext context)`	Listen to an event fired when a stoichiometry is not valid
`void`	CsvMixedEvidenceSource.`onInvalidStoichiometry(String message, FileSourceContext context)`	Listen to an event fired when a stoichiometry is not valid
`void`	CsvNaryEvidenceSource.`onInvalidStoichiometry(String message, FileSourceContext context)`	Listen to an event fired when a stoichiometry is not valid
`void`	AbstractCsvSource.`onInvalidSyntax(FileSourceContext context, Exception e)`	Listen to an invalid syntax causing an Exception
`void`	AbstractCsvStreamSource.`onInvalidSyntax(FileSourceContext context, Exception e)`	Listen to an invalid syntax causing an Exception
`void`	CsvMixedEvidenceSource.`onInvalidSyntax(FileSourceContext context, Exception e)`	Listen to an invalid syntax causing an Exception
`void`	CsvNaryEvidenceSource.`onInvalidSyntax(FileSourceContext context, Exception e)`	Listen to an invalid syntax causing an Exception
`void`	AbstractCsvSource.`onMissingChecksumMethod(FileSourceContext context)`	Listen to an event fired when a checksum does not have a method
`void`	AbstractCsvStreamSource.`onMissingChecksumMethod(FileSourceContext context)`	Listen to an event fired when a checksum does not have a method
`void`	CsvMixedEvidenceSource.`onMissingChecksumMethod(FileSourceContext context)`	Listen to an event fired when a checksum does not have a method
`void`	CsvNaryEvidenceSource.`onMissingChecksumMethod(FileSourceContext context)`	Listen to an event fired when a checksum does not have a method
`void`	AbstractCsvSource.`onMissingChecksumValue(FileSourceContext context)`	Listen to an event fired when a checksum does not have a value
`void`	AbstractCsvStreamSource.`onMissingChecksumValue(FileSourceContext context)`	Listen to an event fired when a checksum does not have a value
`void`	CsvMixedEvidenceSource.`onMissingChecksumValue(FileSourceContext context)`	Listen to an event fired when a checksum does not have a value
`void`	CsvNaryEvidenceSource.`onMissingChecksumValue(FileSourceContext context)`	Listen to an event fired when a checksum does not have a value
`void`	AbstractCsvSource.`onMissingConfidenceType(FileSourceContext context)`	Listen to an event fired when a confidence does not have a confidence type
`void`	AbstractCsvStreamSource.`onMissingConfidenceType(FileSourceContext context)`	Listen to an event fired when a confidence does not have a confidence type
`void`	CsvMixedEvidenceSource.`onMissingConfidenceType(FileSourceContext context)`	Listen to an event fired when a confidence does not have a confidence type
`void`	CsvNaryEvidenceSource.`onMissingConfidenceType(FileSourceContext context)`	Listen to an event fired when a confidence does not have a confidence type
`void`	AbstractCsvSource.`onMissingConfidenceValue(FileSourceContext context)`	Listen to an event fired when a confidence does not have a value
`void`	AbstractCsvStreamSource.`onMissingConfidenceValue(FileSourceContext context)`	Listen to an event fired when a confidence does not have a value
`void`	CsvMixedEvidenceSource.`onMissingConfidenceValue(FileSourceContext context)`	Listen to an event fired when a confidence does not have a value
`void`	CsvNaryEvidenceSource.`onMissingConfidenceValue(FileSourceContext context)`	Listen to an event fired when a confidence does not have a value
`void`	AbstractCsvSource.`onMissingCvTermName(CvTerm term, FileSourceContext context, String message)`	Listen to an event fired when a CvTerm is read and does not have any names.
`void`	AbstractCsvStreamSource.`onMissingCvTermName(CvTerm term, FileSourceContext context, String message)`	Listen to an event fired when a CvTerm is read and does not have any names.
`void`	CsvMixedEvidenceSource.`onMissingCvTermName(CvTerm term, FileSourceContext context, String message)`	Listen to an event fired when a CvTerm is read and does not have any names.
`void`	CsvNaryEvidenceSource.`onMissingCvTermName(CvTerm term, FileSourceContext context, String message)`	Listen to an event fired when a CvTerm is read and does not have any names.
`void`	AbstractCsvSource.`onMissingInteractorName(Interactor interactor, FileSourceContext context)`	Listen to an event fired when an interactor is read and does not have any names.
`void`	AbstractCsvStreamSource.`onMissingInteractorName(Interactor interactor, FileSourceContext context)`	Listen to an event fired when an interactor is read and does not have any names.
`void`	CsvMixedEvidenceSource.`onMissingInteractorName(Interactor interactor, FileSourceContext context)`	Listen to an event fired when an interactor is read and does not have any names.
`void`	CsvNaryEvidenceSource.`onMissingInteractorName(Interactor interactor, FileSourceContext context)`	Listen to an event fired when an interactor is read and does not have any names.
`void`	AbstractCsvSource.`onMissingParameterType(FileSourceContext context)`	Listen to an event fired when a parameter does not have a type
`void`	AbstractCsvStreamSource.`onMissingParameterType(FileSourceContext context)`	Listen to an event fired when a parameter does not have a type
`void`	CsvMixedEvidenceSource.`onMissingParameterType(FileSourceContext context)`	Listen to an event fired when a parameter does not have a type
`void`	CsvNaryEvidenceSource.`onMissingParameterType(FileSourceContext context)`	Listen to an event fired when a parameter does not have a type
`void`	AbstractCsvSource.`onMissingParameterValue(FileSourceContext context)`	Listen to an event fired when a parameter does not have a value
`void`	AbstractCsvStreamSource.`onMissingParameterValue(FileSourceContext context)`	Listen to an event fired when a parameter does not have a value
`void`	CsvMixedEvidenceSource.`onMissingParameterValue(FileSourceContext context)`	Listen to an event fired when a parameter does not have a value
`void`	CsvNaryEvidenceSource.`onMissingParameterValue(FileSourceContext context)`	Listen to an event fired when a parameter does not have a value
`void`	AbstractCsvSource.`onParticipantWithoutInteractor(Participant participant, FileSourceContext context)`	Listen to en event fired when a Participant is read and no interactor details has been provided.
`void`	AbstractCsvStreamSource.`onParticipantWithoutInteractor(Participant participant, FileSourceContext context)`	Listen to en event fired when a Participant is read and no interactor details has been provided.
`void`	CsvMixedEvidenceSource.`onParticipantWithoutInteractor(Participant participant, FileSourceContext context)`	Listen to en event fired when a Participant is read and no interactor details has been provided.
`void`	CsvNaryEvidenceSource.`onParticipantWithoutInteractor(Participant participant, FileSourceContext context)`	Listen to en event fired when a Participant is read and no interactor details has been provided.
`void`	AbstractCsvSource.`onSyntaxWarning(FileSourceContext context, String message)`	Listen to an event fired when the syntax of the file is valid but the content is not expected or some information may be lost.
`void`	AbstractCsvStreamSource.`onSyntaxWarning(FileSourceContext context, String message)`	Listen to an event fired when the syntax of the file is valid but the content is not expected or some information may be lost.
`void`	CsvMixedEvidenceSource.`onSyntaxWarning(FileSourceContext context, String message)`	Listen to an event fired when the syntax of the file is valid but the content is not expected or some information may be lost.
`void`	CsvNaryEvidenceSource.`onSyntaxWarning(FileSourceContext context, String message)`	Listen to an event fired when the syntax of the file is valid but the content is not expected or some information may be lost.
`void`	AbstractCsvSource.`onXrefWithoutDatabase(FileSourceContext context)`	Listen to an event fired when a xref does not have a database
`void`	AbstractCsvStreamSource.`onXrefWithoutDatabase(FileSourceContext context)`	Listen to an event fired when a xref does not have a database
`void`	CsvMixedEvidenceSource.`onXrefWithoutDatabase(FileSourceContext context)`	Listen to an event fired when a xref does not have a database
`void`	CsvNaryEvidenceSource.`onXrefWithoutDatabase(FileSourceContext context)`	Listen to an event fired when a xref does not have a database
`void`	AbstractCsvSource.`onXrefWithoutId(FileSourceContext context)`	Listen to an event fired when a xref does not have an id
`void`	AbstractCsvStreamSource.`onXrefWithoutId(FileSourceContext context)`	Listen to an event fired when a xref does not have an id
`void`	CsvMixedEvidenceSource.`onXrefWithoutId(FileSourceContext context)`	Listen to an event fired when a xref does not have an id
`void`	CsvNaryEvidenceSource.`onXrefWithoutId(FileSourceContext context)`	Listen to an event fired when a xref does not have an id

Uses of FileSourceContext in psidev.psi.mi.jami.crosslink.io.parser

Methods in psidev.psi.mi.jami.crosslink.io.parser with parameters of type FileSourceContext
Modifier and Type	Method	Description
`protected void`	AbstractCsvInteractionEvidenceParser.`processInvalidPosition(String message, FileSourceContext context)`	processInvalidPosition.

Uses of FileSourceContext in psidev.psi.mi.jami.datasource

Classes in psidev.psi.mi.jami.datasource that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`DefaultFileSourceContext`	A DefaultFileSourceContext is the basic implementation of FileSourceContext and contains some file location information

Uses of FileSourceContext in psidev.psi.mi.jami.listener

Methods in psidev.psi.mi.jami.listener with parameters of type FileSourceContext
Modifier and Type	Method	Description
`void`	MIFileParserListener.`onAliasWithoutName(FileSourceContext context)`	Listen to an event fired when an alias does not have a name
`void`	MIFileParserListener.`onAnnotationWithoutTopic(FileSourceContext context)`	Listen to an event fired when an annotation does not have a topic
`void`	MIFileParserListener.`onInteractionWithoutParticipants(Interaction interaction, FileSourceContext context)`	Listen to an event fired when an interaction is read and does not have any participants.
`void`	MIFileParserListener.`onInvalidOrganismTaxid(String taxid, FileSourceContext context)`	Listen to an event fired when an organism does not have a valid taxid (positive integer or -1, -2, -3, -4, -5)
`void`	MIFileParserListener.`onInvalidPosition(String message, FileSourceContext context)`	Listen to an event fired when a position is not valid
`void`	MIFileParserListener.`onInvalidRange(String message, FileSourceContext context)`	Listen to an event fired when a range is not valid
`void`	MIFileParserListener.`onInvalidStoichiometry(String message, FileSourceContext context)`	Listen to an event fired when a stoichiometry is not valid
`void`	MIFileParserListener.`onInvalidSyntax(FileSourceContext context, Exception e)`	Listen to an invalid syntax causing an Exception
`void`	MIFileParserListener.`onMissingChecksumMethod(FileSourceContext context)`	Listen to an event fired when a checksum does not have a method
`void`	MIFileParserListener.`onMissingChecksumValue(FileSourceContext context)`	Listen to an event fired when a checksum does not have a value
`void`	MIFileParserListener.`onMissingConfidenceType(FileSourceContext context)`	Listen to an event fired when a confidence does not have a confidence type
`void`	MIFileParserListener.`onMissingConfidenceValue(FileSourceContext context)`	Listen to an event fired when a confidence does not have a value
`void`	MIFileParserListener.`onMissingCvTermName(CvTerm term, FileSourceContext context, String message)`	Listen to an event fired when a CvTerm is read and does not have any names.
`void`	MIFileParserListener.`onMissingInteractorName(Interactor interactor, FileSourceContext context)`	Listen to an event fired when an interactor is read and does not have any names.
`void`	MIFileParserListener.`onMissingParameterType(FileSourceContext context)`	Listen to an event fired when a parameter does not have a type
`void`	MIFileParserListener.`onMissingParameterValue(FileSourceContext context)`	Listen to an event fired when a parameter does not have a value
`void`	MIFileParserListener.`onParticipantWithoutInteractor(Participant participant, FileSourceContext context)`	Listen to en event fired when a Participant is read and no interactor details has been provided.
`void`	MIFileParserListener.`onSyntaxWarning(FileSourceContext context, String message)`	Listen to an event fired when the syntax of the file is valid but the content is not expected or some information may be lost.
`void`	MIFileParserListener.`onXrefWithoutDatabase(FileSourceContext context)`	Listen to an event fired when a xref does not have a database
`void`	MIFileParserListener.`onXrefWithoutId(FileSourceContext context)`	Listen to an event fired when a xref does not have an id

Uses of FileSourceContext in psidev.psi.mi.jami.listener.impl

Methods in psidev.psi.mi.jami.listener.impl with parameters of type FileSourceContext
Modifier and Type	Method	Description
`void`	MIFileParserCompositeListener.`onAliasWithoutName(FileSourceContext context)`	Listen to an event fired when an alias does not have a name
`void`	MIFileParserLogger.`onAliasWithoutName(FileSourceContext context)`	Listen to an event fired when an alias does not have a name
`void`	MIFileParserCompositeListener.`onAnnotationWithoutTopic(FileSourceContext context)`	Listen to an event fired when an annotation does not have a topic
`void`	MIFileParserLogger.`onAnnotationWithoutTopic(FileSourceContext context)`	Listen to an event fired when an annotation does not have a topic
`void`	MIFileParserCompositeListener.`onInteractionWithoutParticipants(Interaction interaction, FileSourceContext context)`	Listen to an event fired when an interaction is read and does not have any participants.
`void`	MIFileParserLogger.`onInteractionWithoutParticipants(Interaction interaction, FileSourceContext context)`	Listen to an event fired when an interaction is read and does not have any participants.
`void`	MIFileParserCompositeListener.`onInvalidOrganismTaxid(String taxid, FileSourceContext context)`	Listen to an event fired when an organism does not have a valid taxid (positive integer or -1, -2, -3, -4, -5)
`void`	MIFileParserLogger.`onInvalidOrganismTaxid(String taxid, FileSourceContext context)`	Listen to an event fired when an organism does not have a valid taxid (positive integer or -1, -2, -3, -4, -5)
`void`	MIFileParserCompositeListener.`onInvalidPosition(String message, FileSourceContext context)`	Listen to an event fired when a position is not valid
`void`	MIFileParserLogger.`onInvalidPosition(String message, FileSourceContext context)`	Listen to an event fired when a position is not valid
`void`	MIFileParserCompositeListener.`onInvalidRange(String message, FileSourceContext context)`	Listen to an event fired when a range is not valid
`void`	MIFileParserLogger.`onInvalidRange(String message, FileSourceContext context)`	Listen to an event fired when a range is not valid
`void`	MIFileParserCompositeListener.`onInvalidStoichiometry(String message, FileSourceContext context)`	Listen to an event fired when a stoichiometry is not valid
`void`	MIFileParserLogger.`onInvalidStoichiometry(String message, FileSourceContext context)`	Listen to an event fired when a stoichiometry is not valid
`void`	MIFileParserCompositeListener.`onInvalidSyntax(FileSourceContext context, Exception e)`	Listen to an invalid syntax causing an Exception
`void`	MIFileParserLogger.`onInvalidSyntax(FileSourceContext context, Exception e)`	Listen to an invalid syntax causing an Exception
`void`	MIFileParserCompositeListener.`onMissingChecksumMethod(FileSourceContext context)`	Listen to an event fired when a checksum does not have a method
`void`	MIFileParserLogger.`onMissingChecksumMethod(FileSourceContext context)`	Listen to an event fired when a checksum does not have a method
`void`	MIFileParserCompositeListener.`onMissingChecksumValue(FileSourceContext context)`	Listen to an event fired when a checksum does not have a value
`void`	MIFileParserLogger.`onMissingChecksumValue(FileSourceContext context)`	Listen to an event fired when a checksum does not have a value
`void`	MIFileParserCompositeListener.`onMissingConfidenceType(FileSourceContext context)`	Listen to an event fired when a confidence does not have a confidence type
`void`	MIFileParserLogger.`onMissingConfidenceType(FileSourceContext context)`	Listen to an event fired when a confidence does not have a confidence type
`void`	MIFileParserCompositeListener.`onMissingConfidenceValue(FileSourceContext context)`	Listen to an event fired when a confidence does not have a value
`void`	MIFileParserLogger.`onMissingConfidenceValue(FileSourceContext context)`	Listen to an event fired when a confidence does not have a value
`void`	MIFileParserCompositeListener.`onMissingCvTermName(CvTerm term, FileSourceContext context, String message)`	Listen to an event fired when a CvTerm is read and does not have any names.
`void`	MIFileParserLogger.`onMissingCvTermName(CvTerm term, FileSourceContext context, String message)`	Listen to an event fired when a CvTerm is read and does not have any names.
`void`	MIFileParserCompositeListener.`onMissingInteractorName(Interactor interactor, FileSourceContext context)`	Listen to an event fired when an interactor is read and does not have any names.
`void`	MIFileParserLogger.`onMissingInteractorName(Interactor interactor, FileSourceContext context)`	Listen to an event fired when an interactor is read and does not have any names.
`void`	MIFileParserCompositeListener.`onMissingParameterType(FileSourceContext context)`	Listen to an event fired when a parameter does not have a type
`void`	MIFileParserLogger.`onMissingParameterType(FileSourceContext context)`	Listen to an event fired when a parameter does not have a type
`void`	MIFileParserCompositeListener.`onMissingParameterValue(FileSourceContext context)`	Listen to an event fired when a parameter does not have a value
`void`	MIFileParserLogger.`onMissingParameterValue(FileSourceContext context)`	Listen to an event fired when a parameter does not have a value
`void`	MIFileParserCompositeListener.`onParticipantWithoutInteractor(Participant participant, FileSourceContext context)`	Listen to en event fired when a Participant is read and no interactor details has been provided.
`void`	MIFileParserLogger.`onParticipantWithoutInteractor(Participant participant, FileSourceContext context)`	Listen to en event fired when a Participant is read and no interactor details has been provided.
`void`	MIFileParserCompositeListener.`onSyntaxWarning(FileSourceContext context, String message)`	Listen to an event fired when the syntax of the file is valid but the content is not expected or some information may be lost.
`void`	MIFileParserLogger.`onSyntaxWarning(FileSourceContext context, String message)`	Listen to an event fired when the syntax of the file is valid but the content is not expected or some information may be lost.
`void`	MIFileParserCompositeListener.`onXrefWithoutDatabase(FileSourceContext context)`	Listen to an event fired when a xref does not have a database
`void`	MIFileParserLogger.`onXrefWithoutDatabase(FileSourceContext context)`	Listen to an event fired when a xref does not have a database
`void`	MIFileParserCompositeListener.`onXrefWithoutId(FileSourceContext context)`	Listen to an event fired when a xref does not have an id
`void`	MIFileParserLogger.`onXrefWithoutId(FileSourceContext context)`	Listen to an event fired when a xref does not have an id

Uses of FileSourceContext in psidev.psi.mi.jami.tab.extension

Subinterfaces of FileSourceContext in psidev.psi.mi.jami.tab.extension
Modifier and Type	Interface	Description
`interface`	`MitabFeature<P extends Entity,F extends Feature>`	Basic interface for Mitab features

Classes in psidev.psi.mi.jami.tab.extension that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`DefaultMitabFeature`	A DefaultMitabFeature is a feature in MITAB with some free text.
`class`	`MitabAlias`	Extended alias in MITAB
`class`	`MitabAnnotation`	Extension of Annotation for Mitab with a sourceLocator
`class`	`MitabAuthor`	This class wraps information about the first author found in mitab column 8
`class`	`MitabBinaryInteraction`	A MitabBinaryInteraction is a binaryInteraction with a MitabSourceLocator
`class`	`MitabBinaryInteractionEvidence`	TODO comment this
`class`	`MitabBioactiveEntity`	Mitab extension for BioactiveEntity.
`class`	`MitabCausalRelationship`
`class`	`MitabChecksum`	Mitab extension for Checksum.
`class`	`MitabComplex`	Mitab extension for Complex.
`class`	`MitabConfidence`	A MitabConfidence is a confidence with some text
`class`	`MitabCvTerm`	Mitab extension for CvTerm.
`class`	`MitabDate`	This class wraps a date and a fileSourceLocator
`class`	`MitabExperiment`	Mitab extension for Experiment.
`class`	`MitabFeatureEvidence`	Mitab extension for FeatureEvidence
`class`	`MitabGene`	Mitab extension for Gene.
`class`	`MitabInteraction`	Mitab extension for Interaction It contains a SourceLocator
`class`	`MitabInteractionEvidence`	Mitab extension for InteractionEvidence
`class`	`MitabInteractor`	Mitab extension for interactor.
`class`	`MitabInteractorPool`	The mitab extension for InteractorSet
`class`	`MitabModelledBinaryInteraction`	A MitabBinaryInteraction is a modelled binaryInteraction with a MitabSourceLocator
`class`	`MitabModelledFeature`	Mitab extension of ModelledFeature
`class`	`MitabModelledInteraction`	Mitab extension for ModelledInteraction.
`class`	`MitabModelledParticipant`	Mitab extension for ModelledParticipant It contains a FileSourceLocator
`class`	`MitabMolecule`	Mitab extension for Molecule
`class`	`MitabNucleicAcid`	Mitab extension for NucleicAcid It will contain a FileSourceLocator
`class`	`MitabOrganism`	Mitab extension of Organism.
`class`	`MitabParameter`	Mitab extension of Parameter
`class`	`MitabParticipant`	Mitab extension for Participant.
`class`	`MitabParticipantEvidence`	Mitab extension of ParticipantEvidence.
`class`	`MitabPolymer`	Mitab extension of Polymer.
`class`	`MitabProtein`	Mitab extension of Protein.
`class`	`MitabPublication`	Mitab extension of Publication.
`class`	`MitabRange`	Mitab extension of Range It contains a FileSourceLocator
`class`	`MitabSource`	Mitab extension of DefaultMitabSource It contains a FileSourceLocator
`class`	`MitabStoichiometry`	Mitab extension for Stoichiometry.
`class`	`MitabXref`	Mitab extension for Xref.

Uses of FileSourceContext in psidev.psi.mi.jami.tab.extension.datasource

Methods in psidev.psi.mi.jami.tab.extension.datasource with parameters of type FileSourceContext
Modifier and Type	Method	Description
`void`	AbstractMitabSource.`onAliasWithoutName(FileSourceContext context)`	Listen to an event fired when an alias does not have a name
`void`	AbstractMitabStreamSource.`onAliasWithoutName(FileSourceContext context)`	Listen to an event fired when an alias does not have a name
`void`	DefaultMitabStreamSource.`onAliasWithoutName(FileSourceContext context)`	Listen to an event fired when an alias does not have a name
`void`	AbstractMitabSource.`onAnnotationWithoutTopic(FileSourceContext context)`	Listen to an event fired when an annotation does not have a topic
`void`	AbstractMitabStreamSource.`onAnnotationWithoutTopic(FileSourceContext context)`	Listen to an event fired when an annotation does not have a topic
`void`	DefaultMitabStreamSource.`onAnnotationWithoutTopic(FileSourceContext context)`	Listen to an event fired when an annotation does not have a topic
`void`	AbstractMitabSource.`onInteractionWithoutParticipants(Interaction interaction, FileSourceContext context)`	Listen to an event fired when an interaction is read and does not have any participants.
`void`	AbstractMitabStreamSource.`onInteractionWithoutParticipants(Interaction interaction, FileSourceContext context)`	Listen to an event fired when an interaction is read and does not have any participants.
`void`	DefaultMitabStreamSource.`onInteractionWithoutParticipants(Interaction interaction, FileSourceContext context)`	Listen to an event fired when an interaction is read and does not have any participants.
`void`	AbstractMitabSource.`onInvalidOrganismTaxid(String taxid, FileSourceContext context)`	Listen to an event fired when an organism does not have a valid taxid (positive integer or -1, -2, -3, -4, -5)
`void`	AbstractMitabStreamSource.`onInvalidOrganismTaxid(String taxid, FileSourceContext context)`	Listen to an event fired when an organism does not have a valid taxid (positive integer or -1, -2, -3, -4, -5)
`void`	DefaultMitabStreamSource.`onInvalidOrganismTaxid(String taxid, FileSourceContext context)`	Listen to an event fired when an organism does not have a valid taxid (positive integer or -1, -2, -3, -4, -5)
`void`	AbstractMitabSource.`onInvalidPosition(String message, FileSourceContext context)`	Listen to an event fired when a position is not valid
`void`	AbstractMitabStreamSource.`onInvalidPosition(String message, FileSourceContext context)`	Listen to an event fired when a position is not valid
`void`	DefaultMitabStreamSource.`onInvalidPosition(String message, FileSourceContext context)`	Listen to an event fired when a position is not valid
`void`	AbstractMitabSource.`onInvalidRange(String message, FileSourceContext context)`	Listen to an event fired when a range is not valid
`void`	AbstractMitabStreamSource.`onInvalidRange(String message, FileSourceContext context)`	Listen to an event fired when a range is not valid
`void`	DefaultMitabStreamSource.`onInvalidRange(String message, FileSourceContext context)`	Listen to an event fired when a range is not valid
`void`	AbstractMitabSource.`onInvalidStoichiometry(String message, FileSourceContext context)`	Listen to an event fired when a stoichiometry is not valid
`void`	AbstractMitabStreamSource.`onInvalidStoichiometry(String message, FileSourceContext context)`	Listen to an event fired when a stoichiometry is not valid
`void`	DefaultMitabStreamSource.`onInvalidStoichiometry(String message, FileSourceContext context)`	Listen to an event fired when a stoichiometry is not valid
`void`	AbstractMitabSource.`onInvalidSyntax(FileSourceContext context, Exception e)`	Listen to an invalid syntax causing an Exception
`void`	AbstractMitabStreamSource.`onInvalidSyntax(FileSourceContext context, Exception e)`	Listen to an invalid syntax causing an Exception
`void`	DefaultMitabStreamSource.`onInvalidSyntax(FileSourceContext context, Exception e)`	Listen to an invalid syntax causing an Exception
`void`	AbstractMitabSource.`onMissingChecksumMethod(FileSourceContext context)`	Listen to an event fired when a checksum does not have a method
`void`	AbstractMitabStreamSource.`onMissingChecksumMethod(FileSourceContext context)`	Listen to an event fired when a checksum does not have a method
`void`	DefaultMitabStreamSource.`onMissingChecksumMethod(FileSourceContext context)`	Listen to an event fired when a checksum does not have a method
`void`	AbstractMitabSource.`onMissingChecksumValue(FileSourceContext context)`	Listen to an event fired when a checksum does not have a value
`void`	AbstractMitabStreamSource.`onMissingChecksumValue(FileSourceContext context)`	Listen to an event fired when a checksum does not have a value
`void`	DefaultMitabStreamSource.`onMissingChecksumValue(FileSourceContext context)`	Listen to an event fired when a checksum does not have a value
`void`	AbstractMitabSource.`onMissingConfidenceType(FileSourceContext context)`	Listen to an event fired when a confidence does not have a confidence type
`void`	AbstractMitabStreamSource.`onMissingConfidenceType(FileSourceContext context)`	Listen to an event fired when a confidence does not have a confidence type
`void`	DefaultMitabStreamSource.`onMissingConfidenceType(FileSourceContext context)`	Listen to an event fired when a confidence does not have a confidence type
`void`	AbstractMitabSource.`onMissingConfidenceValue(FileSourceContext context)`	Listen to an event fired when a confidence does not have a value
`void`	AbstractMitabStreamSource.`onMissingConfidenceValue(FileSourceContext context)`	Listen to an event fired when a confidence does not have a value
`void`	DefaultMitabStreamSource.`onMissingConfidenceValue(FileSourceContext context)`	Listen to an event fired when a confidence does not have a value
`void`	AbstractMitabSource.`onMissingCvTermName(CvTerm term, FileSourceContext context, String message)`	Listen to an event fired when a CvTerm is read and does not have any names.
`void`	AbstractMitabStreamSource.`onMissingCvTermName(CvTerm term, FileSourceContext context, String message)`	Listen to an event fired when a CvTerm is read and does not have any names.
`void`	DefaultMitabStreamSource.`onMissingCvTermName(CvTerm term, FileSourceContext context, String message)`	Listen to an event fired when a CvTerm is read and does not have any names.
`void`	AbstractMitabSource.`onMissingInteractorName(Interactor interactor, FileSourceContext context)`	Listen to an event fired when an interactor is read and does not have any names.
`void`	AbstractMitabStreamSource.`onMissingInteractorName(Interactor interactor, FileSourceContext context)`	Listen to an event fired when an interactor is read and does not have any names.
`void`	DefaultMitabStreamSource.`onMissingInteractorName(Interactor interactor, FileSourceContext context)`	Listen to an event fired when an interactor is read and does not have any names.
`void`	AbstractMitabSource.`onMissingParameterType(FileSourceContext context)`	Listen to an event fired when a parameter does not have a type
`void`	AbstractMitabStreamSource.`onMissingParameterType(FileSourceContext context)`	Listen to an event fired when a parameter does not have a type
`void`	DefaultMitabStreamSource.`onMissingParameterType(FileSourceContext context)`	Listen to an event fired when a parameter does not have a type
`void`	AbstractMitabSource.`onMissingParameterValue(FileSourceContext context)`	Listen to an event fired when a parameter does not have a value
`void`	AbstractMitabStreamSource.`onMissingParameterValue(FileSourceContext context)`	Listen to an event fired when a parameter does not have a value
`void`	DefaultMitabStreamSource.`onMissingParameterValue(FileSourceContext context)`	Listen to an event fired when a parameter does not have a value
`void`	AbstractMitabSource.`onParticipantWithoutInteractor(Participant participant, FileSourceContext context)`	Listen to en event fired when a Participant is read and no interactor details has been provided.
`void`	AbstractMitabStreamSource.`onParticipantWithoutInteractor(Participant participant, FileSourceContext context)`	Listen to en event fired when a Participant is read and no interactor details has been provided.
`void`	DefaultMitabStreamSource.`onParticipantWithoutInteractor(Participant participant, FileSourceContext context)`	Listen to en event fired when a Participant is read and no interactor details has been provided.
`void`	AbstractMitabSource.`onSeveralCvTermsFound(Collection<MitabCvTerm> terms, FileSourceContext context, String message)`	Listen to an event where several CvTerms were found and only one was expected.
`void`	AbstractMitabStreamSource.`onSeveralCvTermsFound(Collection<MitabCvTerm> terms, FileSourceContext context, String message)`	Listen to an event where several CvTerms were found and only one was expected.
`void`	DefaultMitabStreamSource.`onSeveralCvTermsFound(Collection<MitabCvTerm> terms, FileSourceContext context, String message)`	Listen to an event where several CvTerms were found and only one was expected.
`void`	AbstractMitabSource.`onSeveralHostOrganismFound(Collection<MitabOrganism> organisms, FileSourceContext context)`	Listen to an event where several host organisms were found in a single experiment and only one was expected.
`void`	AbstractMitabStreamSource.`onSeveralHostOrganismFound(Collection<MitabOrganism> organisms, FileSourceContext context)`	Listen to an event where several host organisms were found in a single experiment and only one was expected.
`void`	DefaultMitabStreamSource.`onSeveralHostOrganismFound(Collection<MitabOrganism> organisms, FileSourceContext context)`	Listen to an event where several host organisms were found in a single experiment and only one was expected.
`void`	AbstractMitabSource.`onSyntaxWarning(FileSourceContext context, String message)`	Listen to an event fired when the syntax of the file is valid but the content is not expected or some information may be lost.
`void`	AbstractMitabStreamSource.`onSyntaxWarning(FileSourceContext context, String message)`	Listen to an event fired when the syntax of the file is valid but the content is not expected or some information may be lost.
`void`	DefaultMitabStreamSource.`onSyntaxWarning(FileSourceContext context, String message)`	Listen to an event fired when the syntax of the file is valid but the content is not expected or some information may be lost.
`void`	AbstractMitabSource.`onXrefWithoutDatabase(FileSourceContext context)`	Listen to an event fired when a xref does not have a database
`void`	AbstractMitabStreamSource.`onXrefWithoutDatabase(FileSourceContext context)`	Listen to an event fired when a xref does not have a database
`void`	DefaultMitabStreamSource.`onXrefWithoutDatabase(FileSourceContext context)`	Listen to an event fired when a xref does not have a database
`void`	AbstractMitabSource.`onXrefWithoutId(FileSourceContext context)`	Listen to an event fired when a xref does not have an id
`void`	AbstractMitabStreamSource.`onXrefWithoutId(FileSourceContext context)`	Listen to an event fired when a xref does not have an id
`void`	DefaultMitabStreamSource.`onXrefWithoutId(FileSourceContext context)`	Listen to an event fired when a xref does not have an id

Uses of FileSourceContext in psidev.psi.mi.jami.tab.listener

Methods in psidev.psi.mi.jami.tab.listener with parameters of type FileSourceContext
Modifier and Type	Method	Description
`void`	MitabParserCompositeListener.`onSeveralCvTermsFound(Collection<MitabCvTerm> terms, FileSourceContext context, String message)`	Listen to an event where several CvTerms were found and only one was expected.
`void`	MitabParserListener.`onSeveralCvTermsFound(Collection<MitabCvTerm> terms, FileSourceContext context, String message)`	Listen to an event where several CvTerms were found and only one was expected.
`void`	MitabParserLogger.`onSeveralCvTermsFound(Collection<MitabCvTerm> terms, FileSourceContext context, String message)`	Listen to an event where several CvTerms were found and only one was expected.
`void`	MitabParserCompositeListener.`onSeveralHostOrganismFound(Collection<MitabOrganism> organisms, FileSourceContext context)`	Listen to an event where several host organisms were found in a single experiment and only one was expected.
`void`	MitabParserListener.`onSeveralHostOrganismFound(Collection<MitabOrganism> organisms, FileSourceContext context)`	Listen to an event where several host organisms were found in a single experiment and only one was expected.
`void`	MitabParserLogger.`onSeveralHostOrganismFound(Collection<MitabOrganism> organisms, FileSourceContext context)`	Listen to an event where several host organisms were found in a single experiment and only one was expected.

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model

Classes in psidev.psi.mi.jami.xml.model that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`AbstractBaseEntry<T extends Interaction>`	Abstract class for Entry
`static class`	`AbstractBaseEntry.AbstractJAXBAnnotationsWrapper`
`static class`	`AbstractBaseEntry.AbstractJAXBInteractionsWrapper<T>`
`static class`	`AbstractBaseEntry.AbstractJAXBInteractorsWrapper`
`class`	`AbstractEntrySet<T extends AbstractBaseEntry>`	Abstract class for Psi-XML root node.

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.extension

Subinterfaces of FileSourceContext in psidev.psi.mi.jami.xml.model.extension
Modifier and Type	Interface	Description
`interface`	`ExtendedPsiXmlInteraction<T extends Participant>`	Extended interaction for PSI-XML 2,5 standards
`interface`	`ExtendedPsiXmlInteractionEvidence`	Extended interaction evidence for PSI-XML 2,5 standards
`interface`	`ExtendedPsiXmlModelledInteraction`	Extended modelled interaction for PSI-XML 2,5 standards
`interface`	`PsiXmlInteraction<T extends Participant>`	Interaction for PSI-XML which contains the entry

Classes in psidev.psi.mi.jami.xml.model.extension that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`AbstractAvailability`	A text describing the availability of data, e.g.
`class`	`AbstractBaseXmlInteractor`	The Xml implementation of Interactor
`static class`	`AbstractBaseXmlInteractor.AbstractJAXBAttributeWrapper`
`class`	`AbstractExperimentalInteractor`	Java class for experimentalInteractor complex type.
`static class`	`AbstractExperimentalInteractor.AbstractJAXBExperimentRefWrapper`
`class`	`AbstractInferredInteraction`	Java class for inferredInteraction complex type.
`static class`	`AbstractInferredInteraction.AbstractJAXBExperimentRefWrapper`
`class`	`AbstractInferredInteractionParticipant`	Participant of the inferred interaction.
`class`	`AbstractNamesContainer`	A container for aliases, shortname and fullname The JAXB binding is designed to be read-only and is not designed for writing
`class`	`AbstractXmlVariableParameterValue`	XML implementation of variable parameter value
`class`	`XmlChecksum`	Xml implementation of a checksum
`class`	`XmlStoichiometry`	Xml implementation of stoichiometry

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.extension.binary

Classes in psidev.psi.mi.jami.xml.model.extension.binary that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`AbstractExtendedXmlBinaryInteraction<P extends Participant>`	Abstract class for xml binary interactions
`class`	`AbstractXmlBinaryInteraction<P extends Participant>`	Abstract class for xml binary interactions
`class`	`AbstractXmlBinaryInteractionEvidence`	Abstract class for Xml BinaryInteractionEvidence
`class`	`XmlBinaryInteraction`	Xml implementation of binary interaction
`class`	`XmlBinaryInteractionEvidenceWrapper`	Xml implementation of BinaryInteractionWrapper with a source locator
`class`	`XmlBinaryInteractionWrapper`	Wrapper for ModelledBinaryInteraction
`class`	`XmlModelledBinaryInteraction`	Xml implementation of ModelledInteraction
`class`	`XmlModelledBinaryInteractionWrapper`	Wrapper for Xml binary interactions

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.extension.binary.xml253

Classes in psidev.psi.mi.jami.xml.model.extension.binary.xml253 that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`XmlBinaryInteractionEvidence`	Xml implementation of BinaryInteractionEvidence

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.extension.binary.xml254

Classes in psidev.psi.mi.jami.xml.model.extension.binary.xml254 that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`XmlBinaryInteractionEvidence`	Xml implementation of BinaryInteractionEvidence

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.extension.binary.xml30

Classes in psidev.psi.mi.jami.xml.model.extension.binary.xml30 that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`XmlBinaryInteractionEvidence`	Xml implementation of BinaryInteractionEvidence
`class`	`XmlBinaryInteractionEvidenceWrapper`	Xml implementation of BinaryInteractionWrapper with a source locator
`class`	`XmlModelledBinaryInteraction`	Xml implementation of ModelledInteraction
`class`	`XmlModelledBinaryInteractionWrapper`	Wrapper for Xml binary interactions

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.extension.datasource

Methods in psidev.psi.mi.jami.xml.model.extension.datasource with parameters of type FileSourceContext
Modifier and Type	Method	Description
`void`	AbstractPsiXmlStream.`onAliasWithoutName(FileSourceContext context)`	Listen to an event fired when an alias does not have a name
`void`	DefaultPsiXmlStreamSource.`onAliasWithoutName(FileSourceContext context)`	Listen to an event fired when an alias does not have a name
`void`	AbstractPsiXmlStream.`onAnnotationWithoutTopic(FileSourceContext context)`	Listen to an event fired when an annotation does not have a topic
`void`	DefaultPsiXmlStreamSource.`onAnnotationWithoutTopic(FileSourceContext context)`	Listen to an event fired when an annotation does not have a topic
`void`	AbstractPsiXmlStream.`onInteractionWithoutParticipants(Interaction interaction, FileSourceContext context)`	Listen to an event fired when an interaction is read and does not have any participants.
`void`	DefaultPsiXmlStreamSource.`onInteractionWithoutParticipants(Interaction interaction, FileSourceContext context)`	Listen to an event fired when an interaction is read and does not have any participants.
`void`	AbstractPsiXmlStream.`onInvalidOrganismTaxid(String taxid, FileSourceContext context)`	Listen to an event fired when an organism does not have a valid taxid (positive integer or -1, -2, -3, -4, -5)
`void`	DefaultPsiXmlStreamSource.`onInvalidOrganismTaxid(String taxid, FileSourceContext context)`	Listen to an event fired when an organism does not have a valid taxid (positive integer or -1, -2, -3, -4, -5)
`void`	AbstractPsiXmlStream.`onInvalidPosition(String message, FileSourceContext context)`	Listen to an event fired when a position is not valid
`void`	DefaultPsiXmlStreamSource.`onInvalidPosition(String message, FileSourceContext context)`	Listen to an event fired when a position is not valid
`void`	AbstractPsiXmlStream.`onInvalidRange(String message, FileSourceContext context)`	Listen to an event fired when a range is not valid
`void`	DefaultPsiXmlStreamSource.`onInvalidRange(String message, FileSourceContext context)`	Listen to an event fired when a range is not valid
`void`	AbstractPsiXmlStream.`onInvalidStoichiometry(String message, FileSourceContext context)`	Listen to an event fired when a stoichiometry is not valid
`void`	DefaultPsiXmlStreamSource.`onInvalidStoichiometry(String message, FileSourceContext context)`	Listen to an event fired when a stoichiometry is not valid
`void`	AbstractPsiXmlStream.`onInvalidSyntax(FileSourceContext context, Exception e)`	Listen to an invalid syntax causing an Exception
`void`	DefaultPsiXmlStreamSource.`onInvalidSyntax(FileSourceContext context, Exception e)`	Listen to an invalid syntax causing an Exception
`void`	AbstractPsiXmlStream.`onMissingChecksumMethod(FileSourceContext context)`	Listen to an event fired when a checksum does not have a method
`void`	DefaultPsiXmlStreamSource.`onMissingChecksumMethod(FileSourceContext context)`	Listen to an event fired when a checksum does not have a method
`void`	AbstractPsiXmlStream.`onMissingChecksumValue(FileSourceContext context)`	Listen to an event fired when a checksum does not have a value
`void`	DefaultPsiXmlStreamSource.`onMissingChecksumValue(FileSourceContext context)`	Listen to an event fired when a checksum does not have a value
`void`	AbstractPsiXmlStream.`onMissingConfidenceType(FileSourceContext context)`	Listen to an event fired when a confidence does not have a confidence type
`void`	DefaultPsiXmlStreamSource.`onMissingConfidenceType(FileSourceContext context)`	Listen to an event fired when a confidence does not have a confidence type
`void`	AbstractPsiXmlStream.`onMissingConfidenceValue(FileSourceContext context)`	Listen to an event fired when a confidence does not have a value
`void`	DefaultPsiXmlStreamSource.`onMissingConfidenceValue(FileSourceContext context)`	Listen to an event fired when a confidence does not have a value
`void`	AbstractPsiXmlStream.`onMissingCvTermName(CvTerm term, FileSourceContext context, String message)`	Listen to an event fired when a CvTerm is read and does not have any names.
`void`	DefaultPsiXmlStreamSource.`onMissingCvTermName(CvTerm term, FileSourceContext context, String message)`	Listen to an event fired when a CvTerm is read and does not have any names.
`void`	AbstractPsiXmlStream.`onMissingInteractorName(Interactor interactor, FileSourceContext context)`	Listen to an event fired when an interactor is read and does not have any names.
`void`	DefaultPsiXmlStreamSource.`onMissingInteractorName(Interactor interactor, FileSourceContext context)`	Listen to an event fired when an interactor is read and does not have any names.
`void`	AbstractPsiXmlStream.`onMissingParameterType(FileSourceContext context)`	Listen to an event fired when a parameter does not have a type
`void`	DefaultPsiXmlStreamSource.`onMissingParameterType(FileSourceContext context)`	Listen to an event fired when a parameter does not have a type
`void`	AbstractPsiXmlStream.`onMissingParameterValue(FileSourceContext context)`	Listen to an event fired when a parameter does not have a value
`void`	DefaultPsiXmlStreamSource.`onMissingParameterValue(FileSourceContext context)`	Listen to an event fired when a parameter does not have a value
`void`	AbstractPsiXmlStream.`onParticipantWithoutInteractor(Participant participant, FileSourceContext context)`	Listen to en event fired when a Participant is read and no interactor details has been provided.
`void`	DefaultPsiXmlStreamSource.`onParticipantWithoutInteractor(Participant participant, FileSourceContext context)`	Listen to en event fired when a Participant is read and no interactor details has been provided.
`void`	AbstractPsiXmlStream.`onSyntaxWarning(FileSourceContext context, String message)`	Listen to an event fired when the syntax of the file is valid but the content is not expected or some information may be lost.
`void`	DefaultPsiXmlStreamSource.`onSyntaxWarning(FileSourceContext context, String message)`	Listen to an event fired when the syntax of the file is valid but the content is not expected or some information may be lost.
`void`	AbstractPsiXmlStream.`onXrefWithoutDatabase(FileSourceContext context)`	Listen to an event fired when a xref does not have a database
`void`	DefaultPsiXmlStreamSource.`onXrefWithoutDatabase(FileSourceContext context)`	Listen to an event fired when a xref does not have a database
`void`	AbstractPsiXmlStream.`onXrefWithoutId(FileSourceContext context)`	Listen to an event fired when a xref does not have an id
`void`	DefaultPsiXmlStreamSource.`onXrefWithoutId(FileSourceContext context)`	Listen to an event fired when a xref does not have an id

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.extension.xml253

Classes in psidev.psi.mi.jami.xml.model.extension.xml253 that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`AbstractPsiXmlInteraction<T extends Participant>`	Abstract class for xml interactions implementing ExtendedPsiXmlInteraction interface
`static class`	`AbstractPsiXmlInteraction.JAXBInferredInteractionWrapper`
`class`	`AbstractXmlAnnotation`	Xml implementation of an Annotation The JAXB binding is designed to be read-only and is not designed for writing
`class`	`AbstractXmlBasicInteraction`	Xml implementation of interaction
`static class`	`AbstractXmlBasicInteraction.JAXBParticipantWrapper`
`class`	`AbstractXmlComplex`	Xml implementation for complex
`class`	`AbstractXmlConfidence`	abstract Xml implementation of confidence
`class`	`AbstractXmlCvTerm`	Abstract cv term
`static class`	`AbstractXmlCvTerm.JAXBAttributeWrapper`
`class`	`AbstractXmlEntity<F extends Feature>`	Abstract class for XmlEntity
`static class`	`AbstractXmlEntity.JAXBFeatureWrapper<F extends Feature>`
`class`	`AbstractXmlExperiment`	Xml im
`static class`	`AbstractXmlExperiment.JAXBAttributeWrapper`
`static class`	`AbstractXmlExperiment.JAXBConfidenceWrapper`
`static class`	`AbstractXmlExperiment.JAXBHostOrganismWrapper`
`static class`	`AbstractXmlExperiment.JAXBVariableParameterWrapper`
`class`	`AbstractXmlFeature<P extends Entity,F extends Feature>`	Abstract class for Xml features
`static class`	`AbstractXmlFeature.JAXBAttributeWrapper`
`static class`	`AbstractXmlFeature.JAXBRangeWrapper`
`class`	`AbstractXmlInteraction<T extends Participant>`	Abstract class for xml interactions
`static class`	`AbstractXmlInteraction.JAXBAttributeWrapper`
`static class`	`AbstractXmlInteraction.JAXBParticipantWrapper<T extends Participant>`
`class`	`AbstractXmlInteractionEvidence`	Xml implementation of InteractionEvidence
`static class`	`AbstractXmlInteractionEvidence.JAXBConfidenceWrapper`
`static class`	`AbstractXmlInteractionEvidence.JAXBExperimentWrapper`
`static class`	`AbstractXmlInteractionEvidence.JAXBParameterWrapper`
`static class`	`AbstractXmlInteractionEvidence.JAXBParticipantWrapper`
`class`	`AbstractXmlInteractor`	The Xml implementation of Interactor
`static class`	`AbstractXmlInteractor.JAXBAttributeWrapper`
`class`	`AbstractXmlModelledInteraction`	Xml implementation of ModelledInteraction
`static class`	`AbstractXmlModelledInteraction.JAXBConfidenceWrapper`
`static class`	`AbstractXmlModelledInteraction.JAXBExperimentWrapper`
`static class`	`AbstractXmlModelledInteraction.JAXBParameterWrapper`
`static class`	`AbstractXmlModelledInteraction.JAXBParticipantWrapper`
`class`	`AbstractXmlParameter`	Abstract Xml implementation of Parameter
`class`	`AbstractXmlParticipant<I extends Interaction,F extends Feature>`	Abstract class for XmlParticipant
`static class`	`AbstractXmlParticipant.JAXBAttributeWrapper`
`static class`	`AbstractXmlParticipant.JAXBInteractorCandidateWrapper<I extends Interaction,F extends Feature,P extends ParticipantCandidate>`
`class`	`AbstractXmlParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>`	Abstract class for XML Participant pool
`class`	`AbstractXmlPosition`	Abstract class for XmlPosition
`class`	`AbstractXmlSource`	Desciption of the source of the entry, usually an organisation
`static class`	`AbstractXmlSource.JAXBAttributeWrapper`
`class`	`Availability`	A text describing the availability of data, e.g.
`class`	`BibRef`	Xml implementation of a Publication
`static class`	`BibRef.JAXBAttributeWrapper`
`class`	`ComplexNamesContainer`	A container for aliases, shortname and fullname The JAXB binding is designed to be read-only and is not designed for writing
`class`	`CvTermXrefContainer`	Container for both xrefs and identifiers in a CvTerm
`class`	`DefaultAvailability`	A text describing the availability of data, e.g.
`class`	`DefaultXmlAnnotation`	Xml implementation of an Annotation The JAXB binding is designed to be read-only and is not designed for writing
`class`	`DefaultXmlBasicInteraction`	Xml implementation of interaction
`class`	`DefaultXmlComplex`	Xml implementation for complex
`class`	`DefaultXmlExperiment`	Xml im
`class`	`DefaultXmlInteractionEvidence`	Xml implementation of InteractionEvidence
`class`	`DefaultXmlInteractor`	The Xml implementation of Interactor
`class`	`DefaultXmlModelledInteraction`	Xml implementation of ModelledInteraction
`class`	`DefaultXmlSource`	Desciption of the source of the entry, usually an organisation
`class`	`ExperimentalCvTerm`	This elements is controlled by the PSI-MI controlled vocabulary "experimentalPreparation", root term id MI:0346.
`static class`	`ExperimentalCvTerm.JAXBExperimentRefWrapper`
`class`	`ExperimentalInteractor`	Java class for experimentalInteractor complex type.
`static class`	`ExperimentalInteractor.JAXBExperimentRefWrapper`
`class`	`ExperimentXrefContainer`	Xref container for Experiment
`class`	`FeatureXrefContainer`	Xref container for Feature
`class`	`HostOrganism`	The experiment/participant host organism
`static class`	`HostOrganism.JAXBExperimentRefWrapper`
`class`	`InferredInteraction`	Java class for inferredInteraction complex type.
`static class`	`InferredInteraction.JAXBExperimentRefWrapper`
`class`	`InferredInteractionParticipant`	Participant of the inferred interaction.
`class`	`InteractionXrefContainer`	Xref container for interactions
`class`	`InteractorXrefContainer`	Xref container for interactors
`class`	`NamesContainer`	A container for aliases, shortname and fullname The JAXB binding is designed to be read-only and is not designed for writing
`class`	`PublicationXrefContainer`	Xref container for a Publication
`class`	`XmlAlias`	Xml implementation of an Alias.
`class`	`XmlAllostery<T extends AllostericEffector>`	XML implementation of Allostery
`class`	`XmlAnnotation`	Xml implementation of an Annotation The JAXB binding is designed to be read-only and is not designed for writing
`class`	`XmlBasicInteraction`	Xml implementation of interaction
`class`	`XmlBasicInteractionComplexWrapper`	Wrapper of basic interactions If we add new modelled participants/remove participants, they will be added/removed from the list of participants of the wrapped interaction.
`class`	`XmlBioactiveEntity`	Xml implementation of BioactiveEntity
`class`	`XmlComplex`	Xml implementation of ModelledInteraction
`class`	`XmlConfidence`	Xml implementation of confidence
`static class`	`XmlConfidence.JAXBExperimentRefWrapper`
`class`	`XmlCooperativityEvidence`	Xml implementation for cooperativity evidence
`class`	`XmlCvTerm`	Xml implementation of CvTerm.
`class`	`XmlExperiment`	Xml im
`class`	`XmlExperimentalParticipantCandidate`	Xml implementation of ParticipantEvidence
`static class`	`XmlExperimentalParticipantCandidate.JAXBFeatureWrapper`
`class`	`XmlExperimentalParticipantCandidateWrapper`	Wrapper for Xml participants candidates Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
`class`	`XmlExperimentalParticipantPool`	Xml implementation of participant pool
`class`	`XmlExperimentalParticipantPoolWrapper`	Wrapper for Xml participants pools Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
`class`	`XmlFeature`	Simple Xml implementation of a Feature
`class`	`XmlFeatureEvidence`	Xml implementation of a Feature
`static class`	`XmlFeatureEvidence.JAXBExperimentRefWrapper`
`static class`	`XmlFeatureEvidence.JAXBParameterWrapper`
`class`	`XmlFeatureEvidenceWrapper`	Xml wrapper for feature evidences.
`class`	`XmlFeatureModificationEffector`	Xml implementation of feature modification effector
`class`	`XmlFeatureWrapper`	Xml wrapper for basic features
`class`	`XmlGene`	Xml implementation of a Gene
`class`	`XmlInteractionEvidence`	Xml implementation of InteractionEvidence
`class`	`XmlInteractionEvidenceComplexWrapper`	Xml wrapper for interaction evidences used as complex
`class`	`XmlInteractor`	The Xml implementation of Interactor
`class`	`XmlInteractorPool`	Xml implementation for InteractorSet
`class`	`XmlInterval`	Xml implementation of a position which is an interval The JAXB binding is designed to be read-only and is not designed for writing
`class`	`XmlModelledConfidence`	Xml implementation of ModelledConfidence
`class`	`XmlModelledFeature`	The xml implementation of a modelledFeature
`class`	`XmlModelledInteraction`	Xml implementation of ModelledInteraction
`class`	`XmlModelledInteractionComplexWrapper`	Wrapper for complexes that were loaded as abstract interactions
`class`	`XmlModelledParameter`	Xml implementation of ModelledParameter
`class`	`XmlModelledParticipant`	XML implementation of ModelledParticipant
`static class`	`XmlModelledParticipant.JAXBFeatureWrapper`
`static class`	`XmlModelledParticipant.JAXBInteractorCandidatesWrapper`
`class`	`XmlModelledParticipantCandidate`	XML implementation of ModelledParticipantCandidate
`static class`	`XmlModelledParticipantCandidate.JAXBFeatureWrapper`
`class`	`XmlModelledParticipantPool`	Xml implementation of participant pool
`class`	`XmlMolecule`	Xml implementation of molecule
`class`	`XmlMoleculeEffector`	XML implementation of allosteric molecule effector
`class`	`XmlNucleicAcid`	Xml implementation of Nucleic acid
`class`	`XmlOpenCvTerm`	Xml implementation of CvTerm.
`class`	`XmlOrganism`	Xml implementation of an organism
`class`	`XmlParameter`	Xml implementation of Parameter
`class`	`XmlParticipant`	Xml implementation of a simple participant
`static class`	`XmlParticipant.JAXBFeatureWrapper`
`class`	`XmlParticipantCandidateWrapper`	Wrapper for XmlParticipantCandidate so it implements ModelledParticipantCanidate
`class`	`XmlParticipantEvidence`	Xml implementation of ParticipantEvidence
`static class`	`XmlParticipantEvidence.JAXBConfidenceWrapper`
`static class`	`XmlParticipantEvidence.JAXBExperimentalInteractorWrapper`
`static class`	`XmlParticipantEvidence.JAXBExperimentalPreparationWrapper`
`static class`	`XmlParticipantEvidence.JAXBExperimentalRoleWrapper`
`static class`	`XmlParticipantEvidence.JAXBFeatureWrapper`
`static class`	`XmlParticipantEvidence.JAXBHostOrganismWrapper`
`static class`	`XmlParticipantEvidence.JAXBInteractorCandidatesWrapper`
`static class`	`XmlParticipantEvidence.JAXBParameterWrapper`
`static class`	`XmlParticipantEvidence.JAXBParticipantIdentificationWrapper`
`class`	`XmlParticipantEvidenceWrapper`	Wrapper for Xml participants Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
`class`	`XmlParticipantPoolWrapper`	Wrapper for XmlParticipant
`class`	`XmlParticipantWrapper`	Wrapper for XmlParticipant
`class`	`XmlPolymer`	Xml implementation of Polymer
`class`	`XmlPosition`	Xml implementation of a simple Position The JAXB binding is designed to be read-only and is not designed for writing
`class`	`XmlPreAssembly`	Xml implementation of preassembly
`class`	`XmlProtein`	Xml implementation of protein
`class`	`XmlRange`	Xml implementation of Range The JAXB binding is designed to be read-only and is not designed for writing
`class`	`XmlResultingSequence`	Xml implementation of resulting sequence for XML 2.5
`class`	`XmlSource`	Desciption of the source of the entry, usually an organisation
`class`	`XmlStoichiometryRange`	Xml 2.5 implementation of stoichiometry range values
`class`	`XmlVariableParameter`	XML 2.5 implementation of variable parameter
`static class`	`XmlVariableParameter.JAXBVariableValueWrapper`
`class`	`XmlVariableParameterValue`	XML 2.5 implementation of variable parameter value
`class`	`XmlXref`	Refers to a unique object in an external database.
`static class`	`XmlXref.JAXBAttributeWrapper`
`class`	`XrefContainer`	Xref container in XML implementation The JAXB binding is designed to be read-only and is not designed for writing

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.extension.xml254

Classes in psidev.psi.mi.jami.xml.model.extension.xml254 that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`AbstractPsiXmlInteraction<T extends Participant>`	Abstract class for xml interactions implementing ExtendedPsiXmlInteraction interface
`static class`	`AbstractPsiXmlInteraction.JAXBInferredInteractionWrapper`
`class`	`AbstractXmlAnnotation`	Xml implementation of an Annotation The JAXB binding is designed to be read-only and is not designed for writing
`class`	`AbstractXmlBasicInteraction`	Xml implementation of interaction
`static class`	`AbstractXmlBasicInteraction.JAXBParticipantWrapper`
`class`	`AbstractXmlComplex`	Xml implementation for complex
`class`	`AbstractXmlConfidence`	abstract Xml implementation of confidence
`class`	`AbstractXmlCvTerm`	Abstract cv term
`static class`	`AbstractXmlCvTerm.JAXBAttributeWrapper`
`class`	`AbstractXmlEntity<F extends Feature>`	Abstract class for XmlEntity
`static class`	`AbstractXmlEntity.JAXBFeatureWrapper<F extends Feature>`
`class`	`AbstractXmlExperiment`	Xml im
`static class`	`AbstractXmlExperiment.JAXBAttributeWrapper`
`static class`	`AbstractXmlExperiment.JAXBConfidenceWrapper`
`static class`	`AbstractXmlExperiment.JAXBHostOrganismWrapper`
`static class`	`AbstractXmlExperiment.JAXBVariableParameterWrapper`
`class`	`AbstractXmlFeature<P extends Entity,F extends Feature>`	Abstract class for Xml features
`static class`	`AbstractXmlFeature.JAXBAttributeWrapper`
`static class`	`AbstractXmlFeature.JAXBRangeWrapper`
`class`	`AbstractXmlInteraction<T extends Participant>`	Abstract class for xml interactions
`static class`	`AbstractXmlInteraction.JAXBAttributeWrapper`
`static class`	`AbstractXmlInteraction.JAXBParticipantWrapper<T extends Participant>`
`class`	`AbstractXmlInteractionEvidence`	Xml implementation of InteractionEvidence
`static class`	`AbstractXmlInteractionEvidence.JAXBConfidenceWrapper`
`static class`	`AbstractXmlInteractionEvidence.JAXBExperimentWrapper`
`static class`	`AbstractXmlInteractionEvidence.JAXBParameterWrapper`
`static class`	`AbstractXmlInteractionEvidence.JAXBParticipantWrapper`
`class`	`AbstractXmlInteractor`	The Xml implementation of Interactor
`static class`	`AbstractXmlInteractor.JAXBAttributeWrapper`
`class`	`AbstractXmlModelledInteraction`	Xml implementation of ModelledInteraction
`static class`	`AbstractXmlModelledInteraction.JAXBConfidenceWrapper`
`static class`	`AbstractXmlModelledInteraction.JAXBExperimentWrapper`
`static class`	`AbstractXmlModelledInteraction.JAXBParameterWrapper`
`static class`	`AbstractXmlModelledInteraction.JAXBParticipantWrapper`
`class`	`AbstractXmlParameter`	Abstract Xml implementation of Parameter
`class`	`AbstractXmlParticipant<I extends Interaction,F extends Feature>`	Abstract class for XmlParticipant
`static class`	`AbstractXmlParticipant.JAXBAttributeWrapper`
`static class`	`AbstractXmlParticipant.JAXBInteractorCandidateWrapper<I extends Interaction,F extends Feature,P extends ParticipantCandidate>`
`class`	`AbstractXmlParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>`	Abstract class for XML Participant pool
`class`	`AbstractXmlPosition`	Abstract class for XmlPosition
`class`	`AbstractXmlSource`	Desciption of the source of the entry, usually an organisation
`static class`	`AbstractXmlSource.JAXBAttributeWrapper`
`class`	`Availability`	A text describing the availability of data, e.g.
`class`	`BibRef`	Xml implementation of a Publication
`static class`	`BibRef.JAXBAttributeWrapper`
`class`	`ComplexNamesContainer`	A container for aliases, shortname and fullname The JAXB binding is designed to be read-only and is not designed for writing
`class`	`CvTermXrefContainer`	Container for both xrefs and identifiers in a CvTerm
`class`	`DefaultAvailability`	A text describing the availability of data, e.g.
`class`	`DefaultXmlAnnotation`	Xml implementation of an Annotation The JAXB binding is designed to be read-only and is not designed for writing
`class`	`DefaultXmlBasicInteraction`	Xml implementation of interaction
`class`	`DefaultXmlComplex`	Xml implementation for complex
`class`	`DefaultXmlExperiment`	Xml im
`class`	`DefaultXmlInteractionEvidence`	Xml implementation of InteractionEvidence
`class`	`DefaultXmlInteractor`	The Xml implementation of Interactor
`class`	`DefaultXmlModelledInteraction`	Xml implementation of ModelledInteraction
`class`	`DefaultXmlSource`	Desciption of the source of the entry, usually an organisation
`class`	`ExperimentalCvTerm`	This elements is controlled by the PSI-MI controlled vocabulary "experimentalPreparation", root term id MI:0346.
`static class`	`ExperimentalCvTerm.JAXBExperimentRefWrapper`
`class`	`ExperimentalInteractor`	Java class for experimentalInteractor complex type.
`static class`	`ExperimentalInteractor.JAXBExperimentRefWrapper`
`class`	`ExperimentXrefContainer`	Xref container for Experiment
`class`	`FeatureXrefContainer`	Xref container for Feature
`class`	`HostOrganism`	The experiment/participant host organism
`static class`	`HostOrganism.JAXBExperimentRefWrapper`
`class`	`InferredInteraction`	Java class for inferredInteraction complex type.
`static class`	`InferredInteraction.JAXBExperimentRefWrapper`
`class`	`InferredInteractionParticipant`	Participant of the inferred interaction.
`class`	`InteractionXrefContainer`	Xref container for interactions
`class`	`InteractorXrefContainer`	Xref container for interactors
`class`	`NamesContainer`	A container for aliases, shortname and fullname The JAXB binding is designed to be read-only and is not designed for writing
`class`	`PublicationXrefContainer`	Xref container for a Publication
`class`	`XmlAlias`	Xml implementation of an Alias.
`class`	`XmlAllostery<T extends AllostericEffector>`	XML implementation of Allostery
`class`	`XmlAnnotation`	Xml implementation of an Annotation The JAXB binding is designed to be read-only and is not designed for writing
`class`	`XmlBasicInteraction`	Xml implementation of interaction
`class`	`XmlBasicInteractionComplexWrapper`	Wrapper of basic interactions If we add new modelled participants/remove participants, they will be added/removed from the list of participants of the wrapped interaction.
`class`	`XmlBioactiveEntity`	Xml implementation of BioactiveEntity
`class`	`XmlComplex`	Xml implementation of ModelledInteraction
`class`	`XmlConfidence`	Xml implementation of confidence
`static class`	`XmlConfidence.JAXBExperimentRefWrapper`
`class`	`XmlCooperativityEvidence`	Xml implementation for cooperativity evidence
`class`	`XmlCvTerm`	Xml implementation of CvTerm.
`class`	`XmlExperiment`	Xml im
`class`	`XmlExperimentalParticipantCandidate`	Xml implementation of ParticipantEvidence
`static class`	`XmlExperimentalParticipantCandidate.JAXBFeatureWrapper`
`class`	`XmlExperimentalParticipantCandidateWrapper`	Wrapper for Xml participants candidates Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
`class`	`XmlExperimentalParticipantPool`	Xml implementation of participant pool
`class`	`XmlExperimentalParticipantPoolWrapper`	Wrapper for Xml participants pools Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
`class`	`XmlFeature`	Simple Xml implementation of a Feature
`class`	`XmlFeatureEvidence`	Xml implementation of a Feature
`static class`	`XmlFeatureEvidence.JAXBExperimentRefWrapper`
`static class`	`XmlFeatureEvidence.JAXBParameterWrapper`
`class`	`XmlFeatureEvidenceWrapper`	Xml wrapper for feature evidences.
`class`	`XmlFeatureModificationEffector`	Xml implementation of feature modification effector
`class`	`XmlFeatureWrapper`	Xml wrapper for basic features
`class`	`XmlGene`	Xml implementation of a Gene
`class`	`XmlInteractionEvidence`	Xml implementation of InteractionEvidence
`class`	`XmlInteractionEvidenceComplexWrapper`	Xml wrapper for interaction evidences used as complex
`class`	`XmlInteractor`	The Xml implementation of Interactor
`class`	`XmlInteractorPool`	Xml implementation for InteractorSet
`class`	`XmlInterval`	Xml implementation of a position which is an interval The JAXB binding is designed to be read-only and is not designed for writing
`class`	`XmlModelledConfidence`	Xml implementation of ModelledConfidence
`class`	`XmlModelledFeature`	The xml implementation of a modelledFeature
`class`	`XmlModelledInteraction`	Xml implementation of ModelledInteraction
`class`	`XmlModelledInteractionComplexWrapper`	Wrapper for complexes that were loaded as abstract interactions
`class`	`XmlModelledParameter`	Xml implementation of ModelledParameter
`class`	`XmlModelledParticipant`	XML implementation of ModelledParticipant
`static class`	`XmlModelledParticipant.JAXBFeatureWrapper`
`static class`	`XmlModelledParticipant.JAXBInteractorCandidatesWrapper`
`class`	`XmlModelledParticipantCandidate`	XML implementation of ModelledParticipantCandidate
`static class`	`XmlModelledParticipantCandidate.JAXBFeatureWrapper`
`class`	`XmlModelledParticipantPool`	Xml implementation of participant pool
`class`	`XmlMolecule`	Xml implementation of molecule
`class`	`XmlMoleculeEffector`	XML implementation of allosteric molecule effector
`class`	`XmlNucleicAcid`	Xml implementation of Nucleic acid
`class`	`XmlOpenCvTerm`	Xml implementation of CvTerm.
`class`	`XmlOrganism`	Xml implementation of an organism
`class`	`XmlParameter`	Xml implementation of Parameter
`class`	`XmlParticipant`	Xml implementation of a simple participant
`static class`	`XmlParticipant.JAXBFeatureWrapper`
`class`	`XmlParticipantCandidateWrapper`	Wrapper for XmlParticipantCandidate so it implements ModelledParticipantCanidate
`class`	`XmlParticipantEvidence`	Xml implementation of ParticipantEvidence
`static class`	`XmlParticipantEvidence.JAXBConfidenceWrapper`
`static class`	`XmlParticipantEvidence.JAXBExperimentalInteractorWrapper`
`static class`	`XmlParticipantEvidence.JAXBExperimentalPreparationWrapper`
`static class`	`XmlParticipantEvidence.JAXBExperimentalRoleWrapper`
`static class`	`XmlParticipantEvidence.JAXBFeatureWrapper`
`static class`	`XmlParticipantEvidence.JAXBHostOrganismWrapper`
`static class`	`XmlParticipantEvidence.JAXBInteractorCandidatesWrapper`
`static class`	`XmlParticipantEvidence.JAXBParameterWrapper`
`static class`	`XmlParticipantEvidence.JAXBParticipantIdentificationWrapper`
`class`	`XmlParticipantEvidenceWrapper`	Wrapper for Xml participants Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
`class`	`XmlParticipantPoolWrapper`	Wrapper for XmlParticipant
`class`	`XmlParticipantWrapper`	Wrapper for XmlParticipant
`class`	`XmlPolymer`	Xml implementation of Polymer
`class`	`XmlPosition`	Xml implementation of a simple Position The JAXB binding is designed to be read-only and is not designed for writing
`class`	`XmlPreAssembly`	Xml implementation of preassembly
`class`	`XmlProtein`	Xml implementation of protein
`class`	`XmlRange`	Xml implementation of Range The JAXB binding is designed to be read-only and is not designed for writing
`class`	`XmlResultingSequence`	Xml implementation of resulting sequence for XML 2.5
`class`	`XmlSource`	Desciption of the source of the entry, usually an organisation
`class`	`XmlStoichiometryRange`	Xml 2.5 implementation of stoichiometry range values
`class`	`XmlVariableParameter`	XML 2.5 implementation of variable parameter
`static class`	`XmlVariableParameter.JAXBVariableValueWrapper`
`class`	`XmlVariableParameterValue`	XML 2.5 implementation of variable parameter value
`class`	`XmlXref`	Refers to a unique object in an external database.
`static class`	`XmlXref.JAXBAttributeWrapper`
`class`	`XrefContainer`	Xref container in XML implementation The JAXB binding is designed to be read-only and is not designed for writing

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.extension.xml300

Subinterfaces of FileSourceContext in psidev.psi.mi.jami.xml.model.extension.xml300
Modifier and Type	Interface	Description
`interface`	`ExtendedPsiXmlInteractionEvidence`	Extended interaction evidence for PSI-XML 2,5 standards
`interface`	`ExtendedPsiXmlModelledInteraction`	Extended interaction for PSI-XML 2,5 standards

Classes in psidev.psi.mi.jami.xml.model.extension.xml300 that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`AbstractPsiXmlInteraction<T extends Participant>`	Abstract class for xml interactions implementing ExtendedPsiXmlInteraction interface
`static class`	`AbstractPsiXmlInteraction.JAXBInferredInteractionWrapper`
`class`	`AbstractXmlAnnotation`	Xml implementation of an Annotation The JAXB binding is designed to be read-only and is not designed for writing
`class`	`AbstractXmlBasicInteraction`	Xml implementation of interaction
`static class`	`AbstractXmlBasicInteraction.JAXBParticipantWrapper`
`class`	`AbstractXmlComplex`	Xml implementation for complex
`class`	`AbstractXmlConfidence`	abstract Xml implementation of confidence
`class`	`AbstractXmlCooperativeEffect`	Abstract class for XML 3.0 cooperative effects
`static class`	`AbstractXmlCooperativeEffect.JAXBAffectedInteractionRefWrapper`
`static class`	`AbstractXmlCooperativeEffect.JAXBAttributeWrapper`
`static class`	`AbstractXmlCooperativeEffect.JAXBCooperativityEvidenceWrapper`
`class`	`AbstractXmlCvTerm`	Abstract cv term
`static class`	`AbstractXmlCvTerm.JAXBAttributeWrapper`
`class`	`AbstractXmlEntity<F extends Feature>`	Abstract class for XmlEntity
`static class`	`AbstractXmlEntity.JAXBFeatureWrapper<F extends Feature>`
`class`	`AbstractXmlExperiment`	Xml im
`static class`	`AbstractXmlExperiment.JAXBAttributeWrapper`
`static class`	`AbstractXmlExperiment.JAXBConfidenceWrapper`
`static class`	`AbstractXmlExperiment.JAXBHostOrganismWrapper`
`static class`	`AbstractXmlExperiment.JAXBVariableParameterWrapper`
`class`	`AbstractXmlFeature<P extends Entity,F extends Feature>`	Abstract class for Xml features
`static class`	`AbstractXmlFeature.JAXBAttributeWrapper`
`static class`	`AbstractXmlFeature.JAXBRangeWrapper`
`class`	`AbstractXmlInteraction<T extends Participant>`	Abstract class for xml interactions
`static class`	`AbstractXmlInteraction.JAXBAttributeWrapper`
`static class`	`AbstractXmlInteraction.JAXBParticipantWrapper<T extends Participant>`
`class`	`AbstractXmlInteractionEvidence`	Xml implementation of InteractionEvidence
`static class`	`AbstractXmlInteractionEvidence.JAXBConfidenceWrapper`
`static class`	`AbstractXmlInteractionEvidence.JAXBExperimentWrapper`
`static class`	`AbstractXmlInteractionEvidence.JAXBParameterWrapper`
`static class`	`AbstractXmlInteractionEvidence.JAXBParticipantWrapper`
`class`	`AbstractXmlInteractor`	The Xml implementation of Interactor
`static class`	`AbstractXmlInteractor.JAXBAttributeWrapper`
`class`	`AbstractXmlModelledInteraction`	Xml implementation of ModelledInteraction
`static class`	`AbstractXmlModelledInteraction.JAXBConfidenceWrapper`
`static class`	`AbstractXmlModelledInteraction.JAXBExperimentWrapper`
`static class`	`AbstractXmlModelledInteraction.JAXBParameterWrapper`
`static class`	`AbstractXmlModelledInteraction.JAXBParticipantWrapper`
`class`	`AbstractXmlParameter`	Abstract Xml implementation of Parameter
`class`	`AbstractXmlParticipant<I extends Interaction,F extends Feature>`	Abstract class for XmlParticipant
`static class`	`AbstractXmlParticipant.JAXBAttributeWrapper`
`static class`	`AbstractXmlParticipant.JAXBInteractorCandidateWrapper<I extends Interaction,F extends Feature,P extends ParticipantCandidate>`
`class`	`AbstractXmlParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>`	Abstract class for XML Participant pool
`class`	`AbstractXmlPosition`	Abstract class for XmlPosition
`class`	`AbstractXmlSource`	Desciption of the source of the entry, usually an organisation
`static class`	`AbstractXmlSource.JAXBAttributeWrapper`
`class`	`Availability`	A text describing the availability of data, e.g.
`class`	`BibRef`	Xml implementation of a Publication
`static class`	`BibRef.JAXBAttributeWrapper`
`class`	`BindingFeatures`	Class that wraps a list of linkedFeatures which all bind together
`class`	`ComplexNamesContainer`	A container for aliases, shortname and fullname The JAXB binding is designed to be read-only and is not designed for writing
`class`	`CvTermXrefContainer`	Container for both xrefs and identifiers in a CvTerm
`class`	`DefaultAvailability`	A text describing the availability of data, e.g.
`class`	`DefaultXmlAnnotation`	Xml implementation of an Annotation The JAXB binding is designed to be read-only and is not designed for writing
`class`	`DefaultXmlBasicInteraction`	Xml implementation of interaction
`class`	`DefaultXmlComplex`	Xml implementation for complex
`class`	`DefaultXmlExperiment`	Xml im
`class`	`DefaultXmlInteractionEvidence`	Xml implementation of InteractionEvidence
`class`	`DefaultXmlInteractor`	The Xml implementation of Interactor
`class`	`DefaultXmlModelledInteraction`	Xml implementation of ModelledInteraction
`class`	`DefaultXmlSource`	Desciption of the source of the entry, usually an organisation
`class`	`ExperimentalCvTerm`	This elements is controlled by the PSI-MI controlled vocabulary "experimentalPreparation", root term id MI:0346.
`static class`	`ExperimentalCvTerm.JAXBExperimentRefWrapper`
`class`	`ExperimentalInteractor`	Java class for experimentalInteractor complex type.
`static class`	`ExperimentalInteractor.JAXBExperimentRefWrapper`
`class`	`ExperimentXrefContainer`	Xref container for Experiment
`class`	`FeatureXrefContainer`	Xref container for Feature
`class`	`HostOrganism`	The experiment/participant host organism
`static class`	`HostOrganism.JAXBExperimentRefWrapper`
`class`	`InferredInteraction`	Java class for inferredInteraction complex type.
`static class`	`InferredInteraction.JAXBExperimentRefWrapper`
`class`	`InferredInteractionParticipant`	Participant of the inferred interaction.
`class`	`InteractionXrefContainer`	Xref container for interactions
`class`	`InteractorXrefContainer`	Xref container for interactors
`class`	`NamesContainer`	A container for aliases, shortname and fullname The JAXB binding is designed to be read-only and is not designed for writing
`class`	`PublicationXrefContainer`	Xref container for a Publication
`class`	`XmlAlias`	Xml implementation of an Alias.
`class`	`XmlAllostery`	XML 3.0 implementation of Allostery
`class`	`XmlAnnotation`	Xml implementation of an Annotation The JAXB binding is designed to be read-only and is not designed for writing
`class`	`XmlBasicInteraction`	Xml implementation of interaction
`class`	`XmlBasicInteractionComplexWrapper`	Wrapper of basic interactions If we add new modelled participants/remove participants, they will be added/removed from the list of participants of the wrapped interaction.
`class`	`XmlBioactiveEntity`	Xml implementation of BioactiveEntity
`class`	`XmlCausalRelationship`	XML 3.0 implementation of causal relationship
`class`	`XmlComplex`	Xml implementation of ModelledInteraction
`class`	`XmlConfidence`	Xml implementation of confidence
`static class`	`XmlConfidence.JAXBExperimentRefWrapper`
`class`	`XmlCooperativityEvidence`	Xml 3.0 implementation for cooperativity evidence
`static class`	`XmlCooperativityEvidence.JAXBEvidenceMethodWrapper`
`class`	`XmlCvTerm`	Xml implementation of CvTerm.
`class`	`XmlExperiment`	Xml 3.0 implementation of experiment
`class`	`XmlExperimentalParticipantCandidate`	Xml implementation of ParticipantEvidence
`static class`	`XmlExperimentalParticipantCandidate.JAXBFeatureWrapper`
`class`	`XmlExperimentalParticipantCandidateWrapper`	Wrapper for Xml participants candidates Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
`class`	`XmlExperimentalParticipantPool`	Xml implementation of participant pool
`class`	`XmlExperimentalParticipantPoolWrapper`	Wrapper for Xml participants pools Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
`class`	`XmlFeature`	Simple Xml implementation of a Feature
`class`	`XmlFeatureEvidence`	Xml implementation of a Feature
`static class`	`XmlFeatureEvidence.JAXBExperimentRefWrapper`
`static class`	`XmlFeatureEvidence.JAXBParameterWrapper`
`class`	`XmlFeatureEvidenceWrapper`	Xml wrapper for feature evidences.
`class`	`XmlFeatureModificationEffector`	Xml implementation of feature modification effector
`class`	`XmlFeatureWrapper`	Xml wrapper for basic features
`class`	`XmlGene`	Xml implementation of a Gene
`class`	`XmlInteractionEvidence`	Xml implementation of InteractionEvidence
`static class`	`XmlInteractionEvidence.JAXBCausalRelationshipWrapper`
`static class`	`XmlInteractionEvidence.JAXBExperimentWrapper`
`static class`	`XmlInteractionEvidence.JAXBVariableParameterValueSetWrapper`
`class`	`XmlInteractionEvidenceComplexWrapper`	Xml wrapper for interaction evidences used as complex
`class`	`XmlInteractor`	The Xml implementation of Interactor
`class`	`XmlInteractorPool`	Xml implementation for InteractorSet
`class`	`XmlInterval`	Xml implementation of a position which is an interval The JAXB binding is designed to be read-only and is not designed for writing
`class`	`XmlModelledConfidence`	Xml 3.0 implementation of ModelledConfidence
`class`	`XmlModelledFeature`	The xml implementation of a modelledFeature
`class`	`XmlModelledInteraction`	Xml 3.0.0 implementation of ModelledInteraction
`static class`	`XmlModelledInteraction.JAXBAttributeWrapper`
`static class`	`XmlModelledInteraction.JAXBBindingFeaturesWrapper`
`static class`	`XmlModelledInteraction.JAXBCausalRelationshipWrapper`
`static class`	`XmlModelledInteraction.JAXBConfidenceWrapper`
`static class`	`XmlModelledInteraction.JAXBCooperativeEffectWrapper`
`static class`	`XmlModelledInteraction.JAXBParameterWrapper`
`static class`	`XmlModelledInteraction.JAXBParticipantWrapper`
`class`	`XmlModelledInteractionComplexWrapper`	Wrapper for complexes that were loaded as abstract interactions
`class`	`XmlModelledParameter`	Xml 3.0 implementation of ModelledParameter
`class`	`XmlModelledParticipant`	XML implementation of ModelledParticipant
`static class`	`XmlModelledParticipant.JAXBFeatureWrapper`
`static class`	`XmlModelledParticipant.JAXBInteractorCandidatesWrapper`
`class`	`XmlModelledParticipantCandidate`	XML implementation of ModelledParticipantCandidate
`static class`	`XmlModelledParticipantCandidate.JAXBFeatureWrapper`
`class`	`XmlModelledParticipantPool`	Xml implementation of participant pool
`class`	`XmlMolecule`	Xml implementation of molecule
`class`	`XmlMoleculeEffector`	XML implementation of allosteric molecule effector
`class`	`XmlNucleicAcid`	Xml implementation of Nucleic acid
`class`	`XmlOpenCvTerm`	Xml implementation of CvTerm.
`class`	`XmlOrganism`	Xml implementation of an organism
`class`	`XmlParameter`	Xml implementation of Parameter
`class`	`XmlParticipant`	Xml implementation of a simple participant
`static class`	`XmlParticipant.JAXBFeatureWrapper`
`class`	`XmlParticipantCandidateWrapper`	Wrapper for XmlParticipantCandidate so it implements ModelledParticipantCanidate
`class`	`XmlParticipantEvidence`	Xml implementation of ParticipantEvidence
`static class`	`XmlParticipantEvidence.JAXBConfidenceWrapper`
`static class`	`XmlParticipantEvidence.JAXBExperimentalInteractorWrapper`
`static class`	`XmlParticipantEvidence.JAXBExperimentalPreparationWrapper`
`static class`	`XmlParticipantEvidence.JAXBExperimentalRoleWrapper`
`static class`	`XmlParticipantEvidence.JAXBFeatureWrapper`
`static class`	`XmlParticipantEvidence.JAXBHostOrganismWrapper`
`static class`	`XmlParticipantEvidence.JAXBInteractorCandidatesWrapper`
`static class`	`XmlParticipantEvidence.JAXBParameterWrapper`
`static class`	`XmlParticipantEvidence.JAXBParticipantIdentificationWrapper`
`class`	`XmlParticipantEvidenceWrapper`	Wrapper for Xml participants Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
`class`	`XmlParticipantPoolWrapper`	Wrapper for XmlParticipant
`class`	`XmlParticipantWrapper`	Wrapper for XmlParticipant
`class`	`XmlPolymer`	Xml implementation of Polymer
`class`	`XmlPosition`	Xml implementation of a simple Position The JAXB binding is designed to be read-only and is not designed for writing
`class`	`XmlPreAssembly`	Xml 3.0 implementation of preassembly
`class`	`XmlProtein`	Xml implementation of protein
`class`	`XmlRange`	Xml implementation of Range The JAXB binding is designed to be read-only and is not designed for writing
`class`	`XmlResultingSequence`	Xml implementation of resulting sequence for XML 3.0
`class`	`XmlSource`	Desciption of the source of the entry, usually an organisation
`class`	`XmlStoichiometryRange`	Xml 3.0 implementation of stoichiometry range values
`class`	`XmlVariableParameter`	XML 3.0 implementation of variable parameter
`static class`	`XmlVariableParameter.JAXBVariableValueWrapper`
`class`	`XmlVariableParameterValue`	XML 3.0 implementation of variable parameter value
`class`	`XmlVariableParameterValueSet`	XML 3.0 implementation of variable parameter value set
`class`	`XmlXref`	Refers to a unique object in an external database.
`static class`	`XmlXref.JAXBAttributeWrapper`
`class`	`XrefContainer`	Xref container in XML implementation The JAXB binding is designed to be read-only and is not designed for writing

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.reference

Subinterfaces of FileSourceContext in psidev.psi.mi.jami.xml.model.reference
Modifier and Type	Interface	Description
`interface`	`XmlIdReference`	A XML reference to an parent having an id

Classes in psidev.psi.mi.jami.xml.model.reference that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`AbstractFeatureRef<E extends Entity,F extends Feature>`	Abstract feature reference
`class`	`AbstractXmlIdReference`	Abstract implementation for XmlIdReference

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.reference.xml253

Classes in psidev.psi.mi.jami.xml.model.reference.xml253 that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`AbstractAvailabilityRef`	Abstract class for Availability ref
`class`	`AbstractComplexRef`	Abstract class for references to a complex
`class`	`AbstractEntityRef<T extends Feature>`	Abstract entity reference
`class`	`AbstractExperimentRef`	Abstract class for an ModelledInteractionRef
`class`	`AbstractInteractorRef`	An implementation of XmlIdReference for interactors
`class`	`AbstractParticipantRef<I extends Interaction,T extends Feature>`	Abstract participant reference

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.reference.xml254

Classes in psidev.psi.mi.jami.xml.model.reference.xml254 that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`AbstractAvailabilityRef`	Abstract class for Availability ref
`class`	`AbstractComplexRef`	Abstract class for references to a complex
`class`	`AbstractEntityRef<T extends Feature>`	Abstract entity reference
`class`	`AbstractExperimentRef`	Abstract class for an ModelledInteractionRef
`class`	`AbstractInteractorRef`	An implementation of XmlIdReference for interactors
`class`	`AbstractParticipantRef<I extends Interaction,T extends Feature>`	Abstract participant reference

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.reference.xml300

Classes in psidev.psi.mi.jami.xml.model.reference.xml300 that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`AbstractAvailabilityRef`	Abstract class for Availability ref
`class`	`AbstractComplexRef`	Abstract class for references to a complex
`class`	`AbstractEntityRef<T extends Feature>`	Abstract entity reference
`class`	`AbstractExperimentRef`	Abstract class for an ModelledInteractionRef
`class`	`AbstractInteractorRef`	An implementation of XmlIdReference for interactors
`class`	`AbstractParticipantRef<I extends Interaction,T extends Feature>`	Abstract participant reference

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.xml253

Classes in psidev.psi.mi.jami.xml.model.xml253 that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`AbstractEntry<T extends Interaction>`	Abstract class for Entry
`static class`	`AbstractEntry.JAXBAnnotationsWrapper`
`static class`	`AbstractEntry.JAXBInteractionsWrapper<T>`
`static class`	`AbstractEntry.JAXBInteractorsWrapper`
`class`	`BasicEntry`	Basic Entry implementation for JAXB read only.
`static class`	`BasicEntry.JAXBInteractionsWrapper`
`class`	`ComplexEntry`	Complex Entry implementation for JAXB read only.
`static class`	`ComplexEntry.JAXBExperimentsWrapper`
`static class`	`ComplexEntry.JAXBInteractionsWrapper`
`class`	`ExperimentalEntry`	Entry implementation for JAXB read only
`static class`	`ExperimentalEntry.JAXBAvailabilitiesWrapper`
`static class`	`ExperimentalEntry.JAXBExperimentsWrapper`
`static class`	`ExperimentalEntry.JAXBInteractionsWrapper`
`class`	`ModelledEntry`	Modelled Entry implementation for JAXB read only.
`static class`	`ModelledEntry.JAXBExperimentsWrapper`
`static class`	`ModelledEntry.JAXBInteractionsWrapper`
`class`	`Xml253BasicEntrySet`	Basic EntrySet implementation for JAXB read only .
`class`	`Xml253ComplexEntrySet`	Modelled EntrySet implementation for JAXB read only Ignore all experimental details
`class`	`Xml253ExperimentalEntrySet`	Xml253ExperimentalEntrySet implementation for JAXB read only
`class`	`Xml253ModelledEntrySet`	Modelled EntrySet implementation for JAXB read only Ignore all experimental details

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.xml254

Classes in psidev.psi.mi.jami.xml.model.xml254 that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`AbstractEntry<T extends Interaction>`	Abstract class for Entry
`static class`	`AbstractEntry.JAXBAnnotationsWrapper`
`static class`	`AbstractEntry.JAXBInteractionsWrapper<T>`
`static class`	`AbstractEntry.JAXBInteractorsWrapper`
`class`	`BasicEntry`	Basic Entry implementation for JAXB read only.
`static class`	`BasicEntry.JAXBInteractionsWrapper`
`class`	`ComplexEntry`	Complex Entry implementation for JAXB read only.
`static class`	`ComplexEntry.JAXBExperimentsWrapper`
`static class`	`ComplexEntry.JAXBInteractionsWrapper`
`class`	`ExperimentalEntry`	Entry implementation for JAXB read only
`static class`	`ExperimentalEntry.JAXBAvailabilitiesWrapper`
`static class`	`ExperimentalEntry.JAXBExperimentsWrapper`
`static class`	`ExperimentalEntry.JAXBInteractionsWrapper`
`class`	`ModelledEntry`	Modelled Entry implementation for JAXB read only.
`static class`	`ModelledEntry.JAXBExperimentsWrapper`
`static class`	`ModelledEntry.JAXBInteractionsWrapper`
`class`	`Xml254BasicEntrySet`	Basic EntrySet implementation for JAXB read only .
`class`	`Xml254ComplexEntrySet`	Modelled EntrySet implementation for JAXB read only Ignore all experimental details
`class`	`Xml254ExperimentalEntrySet`	Xml254ExperimentalEntrySet implementation for JAXB read only
`class`	`Xml254ModelledEntrySet`	Modelled EntrySet implementation for JAXB read only Ignore all experimental details

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.xml30

Classes in psidev.psi.mi.jami.xml.model.xml30 that implement FileSourceContext
Modifier and Type	Class	Description
`class`	`AbstractEntry<T extends Interaction>`	Abstract class for Entry
`static class`	`AbstractEntry.JAXBAnnotationsWrapper`
`static class`	`AbstractEntry.JAXBInteractionsWrapper<T>`
`static class`	`AbstractEntry.JAXBInteractorsWrapper`
`class`	`BasicEntry`	Basic Entry implementation for JAXB read only.
`static class`	`BasicEntry.JAXBInteractionsWrapper`
`class`	`ComplexEntry`	Complex Entry implementation for JAXB read only.
`static class`	`ComplexEntry.JAXBExperimentsWrapper`
`static class`	`ComplexEntry.JAXBInteractionsWrapper`
`class`	`Entry`	PSI XML 3.0 Entry implementation for JAXB read only
`static class`	`Entry.JAXBAvailabilitiesWrapper`
`static class`	`Entry.JAXBExperimentsWrapper`
`static class`	`Entry.JAXBInteractionsWrapper`
`class`	`ExperimentalEntry`	Entry implementation for JAXB read only
`static class`	`ExperimentalEntry.JAXBAvailabilitiesWrapper`
`static class`	`ExperimentalEntry.JAXBExperimentsWrapper`
`static class`	`ExperimentalEntry.JAXBInteractionsWrapper`
`class`	`ModelledEntry`	Modelled Entry implementation for JAXB read only.
`static class`	`ModelledEntry.JAXBExperimentsWrapper`
`static class`	`ModelledEntry.JAXBInteractionsWrapper`
`class`	`Xml300EntrySet`	Xml300EntrySet implementation for JAXB read only

Uses of Interfacepsidev.psi.mi.jami.datasource.FileSourceContext

Uses of FileSourceContext in psidev.psi.mi.jami.crosslink.extension

Uses of FileSourceContext in psidev.psi.mi.jami.crosslink.extension.datasource

Uses of FileSourceContext in psidev.psi.mi.jami.crosslink.io.parser

Uses of FileSourceContext in psidev.psi.mi.jami.datasource

Uses of FileSourceContext in psidev.psi.mi.jami.listener

Uses of FileSourceContext in psidev.psi.mi.jami.listener.impl

Uses of FileSourceContext in psidev.psi.mi.jami.tab.extension

Uses of FileSourceContext in psidev.psi.mi.jami.tab.extension.datasource

Uses of FileSourceContext in psidev.psi.mi.jami.tab.listener

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.extension

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.extension.binary

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.extension.binary.xml253

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.extension.binary.xml254

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.extension.binary.xml30

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.extension.datasource

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.extension.xml253

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.extension.xml254

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.extension.xml300

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.reference

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.reference.xml253

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.reference.xml254

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.reference.xml300

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.xml253

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.xml254

Uses of FileSourceContext in psidev.psi.mi.jami.xml.model.xml30

Uses of Interface
psidev.psi.mi.jami.datasource.FileSourceContext